| { |
| "ranked": [ |
| { |
| "label": "CEBPA", |
| "genes": [ |
| "CEBPA" |
| ], |
| "operation": "activation", |
| "predicted_reward": -5.897198677062988 |
| }, |
| { |
| "label": "ATL1", |
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| "ATL1" |
| ], |
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| "predicted_reward": -5.897573471069336 |
| }, |
| { |
| "label": "CEBPA_ZC3HAV1", |
| "genes": [ |
| "CEBPA", |
| "ZC3HAV1" |
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| "operation": "activation", |
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| { |
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| }, |
| { |
| "label": "CEBPE_ZC3HAV1", |
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| "ZC3HAV1" |
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| "operation": "activation", |
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| } |
| ], |
| "search": "guidance", |
| "reward": "centroid", |
| "target_file": "target.npy", |
| "control_cell_ids": [ |
| "CGTGTAATCCATGCTC", |
| "GGGACCTGTATGAAAC", |
| "ATCATGGTCTGCCAGG", |
| "CATCGAATCAGTCAGT", |
| "TTCTCAAAGCTCCTTC", |
| "TGGCTGGAGACCTAGG", |
| "CGTGAGCTCAACTCTT", |
| "GATGAGGGTGACCAAG", |
| "TAAACCGGTAATCACC", |
| "CTACATTGTTAAGAAC", |
| "GATTCAGCAACACCCG", |
| "ACGATGTAGGGATACC", |
| "CTAAGACGTCGAACAG", |
| "TAAGTGCGTGGGTCAA", |
| "AGTGGGACAGGCTGAA", |
| "ACGCCGAGTGAAATCA" |
| ], |
| "data_meta": { |
| "reference_fraction": 0.1, |
| "protocol": "split-first-v1", |
| "dataset": "norman", |
| "name": "norman", |
| "operation": "activation", |
| "control_label": "control", |
| "sep": "_", |
| "split": "perturbation", |
| "seed": 0, |
| "input_scale": "counts", |
| "raw_sha256": "21bd3c00b7f243d998aa9ca616490b45bf1b4ba9934d501190a867ddad982dae", |
| "raw_file": "norman_small.h5ad", |
| "n_cells": 920, |
| "n_control": 120, |
| "n_hvg": 201, |
| "n_pca": 10, |
| "pca_explained_var": 0.5626983046531677, |
| "mmd_gamma": 0.06974897265608301, |
| "fit_cell_ids_sha256": "5ff57f6222cd8d3e4dd6b7fa658c8599cf6eb4b553a607ad9100a7fc240f9f22", |
| "selection": { |
| "max_cells": null, |
| "max_per_group": null, |
| "max_groups": null |
| }, |
| "software": { |
| "scanpy": "1.12.4", |
| "anndata": "0.13.3.post0" |
| } |
| } |
| } |
