| { |
| "$defs": { |
| "Candidate": { |
| "additionalProperties": false, |
| "properties": { |
| "molecule": { |
| "$ref": "#/$defs/Molecule" |
| }, |
| "parent_ids": { |
| "items": { |
| "type": "string" |
| }, |
| "title": "Parent Ids", |
| "type": "array" |
| }, |
| "generator": { |
| "title": "Generator", |
| "type": "string" |
| }, |
| "revision": { |
| "title": "Revision", |
| "type": "string" |
| } |
| }, |
| "required": [ |
| "molecule", |
| "generator", |
| "revision" |
| ], |
| "title": "Candidate", |
| "type": "object" |
| }, |
| "Evidence": { |
| "additionalProperties": false, |
| "properties": { |
| "id": { |
| "title": "Id", |
| "type": "string" |
| }, |
| "source_url": { |
| "title": "Source Url", |
| "type": "string" |
| }, |
| "source_version": { |
| "title": "Source Version", |
| "type": "string" |
| }, |
| "retrieved_at": { |
| "title": "Retrieved At", |
| "type": "string" |
| }, |
| "passage": { |
| "title": "Passage", |
| "type": "string" |
| }, |
| "claim": { |
| "title": "Claim", |
| "type": "string" |
| }, |
| "target_ids": { |
| "items": { |
| "type": "string" |
| }, |
| "title": "Target Ids", |
| "type": "array" |
| }, |
| "species": { |
| "title": "Species", |
| "type": "string" |
| }, |
| "assay": { |
| "title": "Assay", |
| "type": "string" |
| }, |
| "molecular_format": { |
| "title": "Molecular Format", |
| "type": "string" |
| }, |
| "direction": { |
| "enum": [ |
| "supports", |
| "opposes", |
| "unresolved" |
| ], |
| "title": "Direction", |
| "type": "string" |
| }, |
| "evidence_type": { |
| "enum": [ |
| "experimental", |
| "computational", |
| "review" |
| ], |
| "title": "Evidence Type", |
| "type": "string" |
| } |
| }, |
| "required": [ |
| "id", |
| "source_url", |
| "source_version", |
| "retrieved_at", |
| "passage", |
| "claim", |
| "target_ids", |
| "species", |
| "assay", |
| "molecular_format", |
| "direction", |
| "evidence_type" |
| ], |
| "title": "Evidence", |
| "type": "object" |
| }, |
| "Measurement": { |
| "additionalProperties": false, |
| "properties": { |
| "candidate_id": { |
| "title": "Candidate Id", |
| "type": "string" |
| }, |
| "endpoint": { |
| "title": "Endpoint", |
| "type": "string" |
| }, |
| "value": { |
| "title": "Value", |
| "type": "number" |
| }, |
| "unit": { |
| "title": "Unit", |
| "type": "string" |
| }, |
| "source_id": { |
| "title": "Source Id", |
| "type": "string" |
| }, |
| "kind": { |
| "enum": [ |
| "prediction", |
| "experiment" |
| ], |
| "title": "Kind", |
| "type": "string" |
| }, |
| "lower": { |
| "anyOf": [ |
| { |
| "type": "number" |
| }, |
| { |
| "type": "null" |
| } |
| ], |
| "default": null, |
| "title": "Lower" |
| }, |
| "upper": { |
| "anyOf": [ |
| { |
| "type": "number" |
| }, |
| { |
| "type": "null" |
| } |
| ], |
| "default": null, |
| "title": "Upper" |
| }, |
| "assay": { |
| "title": "Assay", |
| "type": "string" |
| }, |
| "replicate_id": { |
| "anyOf": [ |
| { |
| "type": "string" |
| }, |
| { |
| "type": "null" |
| } |
| ], |
| "default": null, |
| "title": "Replicate Id" |
| }, |
| "censor": { |
| "default": "none", |
| "enum": [ |
| "none", |
| "left", |
| "right" |
| ], |
| "title": "Censor", |
| "type": "string" |
| } |
| }, |
| "required": [ |
| "candidate_id", |
| "endpoint", |
| "value", |
| "unit", |
| "source_id", |
| "kind", |
| "assay" |
| ], |
| "title": "Measurement", |
| "type": "object" |
| }, |
| "Modification": { |
| "additionalProperties": false, |
| "properties": { |
| "position": { |
| "minimum": 1, |
| "title": "Position", |
| "type": "integer" |
| }, |
| "residue": { |
| "maxLength": 1, |
| "minLength": 1, |
| "title": "Residue", |
| "type": "string" |
| }, |
| "ccd": { |
| "minLength": 1, |
| "title": "Ccd", |
| "type": "string" |
| } |
| }, |
| "required": [ |
| "position", |
| "residue", |
| "ccd" |
| ], |
| "title": "Modification", |
| "type": "object" |
| }, |
| "Molecule": { |
| "additionalProperties": false, |
| "properties": { |
| "sequence": { |
| "title": "Sequence", |
| "type": "string" |
| }, |
| "modifications": { |
| "items": { |
| "$ref": "#/$defs/Modification" |
| }, |
| "title": "Modifications", |
| "type": "array" |
| }, |
| "bonds": { |
| "items": { |
| "maxItems": 4, |
| "minItems": 4, |
| "prefixItems": [ |
| { |
| "type": "integer" |
| }, |
| { |
| "type": "string" |
| }, |
| { |
| "type": "integer" |
| }, |
| { |
| "type": "string" |
| } |
| ], |
| "type": "array" |
| }, |
| "title": "Bonds", |
| "type": "array" |
| }, |
| "n_terminus": { |
| "default": "free", |
| "title": "N Terminus", |
| "type": "string" |
| }, |
| "c_terminus": { |
| "default": "free", |
| "title": "C Terminus", |
| "type": "string" |
| }, |
| "smiles": { |
| "anyOf": [ |
| { |
| "type": "string" |
| }, |
| { |
| "type": "null" |
| } |
| ], |
| "default": null, |
| "title": "Smiles" |
| } |
| }, |
| "required": [ |
| "sequence" |
| ], |
| "title": "Molecule", |
| "type": "object" |
| } |
| }, |
| "additionalProperties": false, |
| "properties": { |
| "candidates": { |
| "items": { |
| "$ref": "#/$defs/Candidate" |
| }, |
| "title": "Candidates", |
| "type": "array" |
| }, |
| "measurements": { |
| "items": { |
| "$ref": "#/$defs/Measurement" |
| }, |
| "title": "Measurements", |
| "type": "array" |
| }, |
| "evidence": { |
| "items": { |
| "$ref": "#/$defs/Evidence" |
| }, |
| "title": "Evidence", |
| "type": "array" |
| }, |
| "artifacts": { |
| "additionalProperties": { |
| "type": "string" |
| }, |
| "title": "Artifacts", |
| "type": "object" |
| }, |
| "message": { |
| "default": "", |
| "title": "Message", |
| "type": "string" |
| } |
| }, |
| "title": "ToolResult", |
| "type": "object" |
| } |
