| [build-system] |
| requires = ["setuptools>=68", "wheel"] |
| build-backend = "setuptools.build_meta" |
|
|
| [project] |
| name = "remedi-cell" |
| version = "0.1.0" |
| description = "Replicate-enabled minimax endpoint-directed inference for molecule-dose selection" |
| readme = "README.md" |
| requires-python = ">=3.11" |
| dependencies = ["numpy>=1.24", "scipy>=1.10", "pandas>=2.0", "scikit-learn>=1.7", "cvxpy>=1.5", "clarabel>=0.9", "joblib>=1.3", "matplotlib>=3.7", "requests>=2.31", "PyYAML>=6", "rdkit>=2023.9"] |
|
|
| [project.optional-dependencies] |
| data = ["anndata>=0.10", "h5py>=3.9", "rdkit>=2023.9", "huggingface_hub>=0.25", "pyarrow>=14", "fsspec>=2024.2", "aiohttp>=3.9"] |
| encoders = ["torch>=2.2", "transformers>=4.40", "rdkit>=2023.9"] |
| dev = ["pytest>=8", "ruff>=0.5"] |
|
|
| [project.scripts] |
| remedi = "remedi.cli:main" |
|
|
| [tool.setuptools.packages.find] |
| where = ["src"] |
|
|
| [tool.pytest.ini_options] |
| testpaths = ["tests"] |
| addopts = "-q" |
|
|
| [tool.ruff] |
| line-length = 100 |
|
|
|
|
| [tool.setuptools.package-data] |
| remedi = ["fonts/*.ttf", "fonts/UFL.txt"] |
|
|
