cas9/scripts/generate.sh

#!/usr/bin/env bash
# Unguided / seeded Cas9 rollouts (no objectives) -> one CSV per ortholog.
set -euo pipefail
ROOT="$(cd "$(dirname "$0")/../.." && pwd)"
cd "$ROOT"
python -u -m cas9.generate_cas9_csvs \
  --config "$ROOT/configs/config_cas9.yaml" \
  --ckpt "$ROOT/cas9/ckpt/last.ckpt" \
  --sequences "$ROOT/cas9/data/orthologs.fasta" \
  --num_steps 32 \
  --output_dir "$ROOT/outputs" \
  "$@"