rnaseek-full / regression_stability_functionalviral

133 GB

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1 contributor

History: 6 commits

schen647

Update release documentation and model entry points

db88907 verified about 2 months ago

align_bam
included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
align_logs
included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
benchmark_shipped_encoders
Add validated RiNALMo-Giga and Evo 2 benchmarks, revised figures and portable environments about 2 months ago
bt2_index
included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
checkpoint-44040_best
Remove superseded release intermediates; preserve pretraining about 2 months ago
checkpoint_44040_best_test_eval
included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
checkpoint_eval_ranking_outputs
included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
checkpoint_eval_train_valid_outputs
included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
counts_per_alignid
included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
figure4_update_work
Publish portable RNASeek workflows, fixed analyses, and tested checkpoints about 2 months ago
qwen_stability_regression_ckpt
Remove superseded release intermediates; preserve pretraining about 2 months ago
rnaseek_abs20_tuning
Update release documentation and model entry points about 2 months ago
supplementary_figure4
Publish portable RNASeek workflows, fixed analyses, and tested checkpoints about 2 months ago
tensorboard
Remove superseded release intermediates; preserve pretraining about 2 months ago
DNA_rep1.fq.gz

1.41 GB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
DNA_rep2.fq.gz

1.29 GB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
DNA_rep3.fq.gz

1.3 GB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
DNA_rep4.fq.gz

1.41 GB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
RNA_rep1.fq.gz

1.29 GB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
RNA_rep2.fq.gz

1.33 GB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
RNA_rep3.fq.gz

1.97 GB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
RNA_rep4.fq.gz

1.2 GB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
TILE_mpra.fa

22.9 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
alignment_qc_summary.tsv

689 Bytes
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
barcode_level_counts_with_metadata.tsv

39.3 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
barcode_level_ratios.tsv

64.1 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
barcode_level_ratios_qc.tsv

64.5 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
countBC_merge_alignid.tsv

9.9 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
element_level_readout_all_qc_barcodes.tsv

13.7 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
element_level_readout_consistent.tsv

13.5 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
extract_rnaseek_figure4_embeddings.py

4.34 kB
Publish portable RNASeek workflows, fixed analyses, and tested checkpoints about 2 months ago
figure4_revised.pptx

1.94 MB
xet

Publish portable RNASeek workflows, fixed analyses, and tested checkpoints about 2 months ago
figure4_revised_dedup_corrected.pptx

2.68 MB
xet

Publish portable RNASeek workflows, fixed analyses, and tested checkpoints about 2 months ago
figure4_revised_dedup_top25_corrected.pptx

3.04 MB
xet

Publish portable RNASeek workflows, fixed analyses, and tested checkpoints about 2 months ago
label_stats_consistent_from_alignment.json

479 Bytes
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
plasmid.fq.gz

1.72 GB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
prompt_generation_metadata.tsv

16.4 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
replicate_correlation_train.tsv

914 Bytes
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
stabilizing_elements_consistent.tsv

7.78 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
supplementary_figure4_design_space.pptx

1.09 MB
xet

Publish portable RNASeek workflows, fixed analyses, and tested checkpoints about 2 months ago
train.txt

7.32 MB
included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
training_seq_score_consistent_from_alignment.tsv

9.82 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
training_seq_score_consistent_from_alignment_zscore_split.tsv

11.1 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
training_seq_score_extreme_weighted.tsv

14.5 MB
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
training_seq_score_extreme_weighted_stats.json

794 Bytes
xet

included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago
valid.txt

810 kB
included pretraining from hpcc and exported dataset from ipynb; zipped all safetensors weights 3 months ago