| --- |
| license: apache-2.0 |
| library_name: mlx |
| tags: |
| - mlx |
| - native-mlx |
| - apple-silicon |
| - medical-imaging |
| - mri |
| - brain-tumor |
| - segmentation |
| - research |
| language: |
| - en |
| inference: false |
| pipeline_tag: image-segmentation |
| base_model: MONAI/brats_mri_segmentation |
| --- |
| |
| <img src="https://huggingface.co/MedMLX/segresnet-brats-mlx/resolve/main/banner.png" alt="MedMLX — Segment. BRAIN MRI / SEGRESNET" width="100%"> |
|
|
| # SegResNet · Brain Tumor |
|
|
| Segment brain tumor regions from four MRI sequences with the MONAI SegResNet checkpoint. |
|
|
| [GitHub](https://github.com/MedMLX/segresnet-mlx) · [Files](https://huggingface.co/MedMLX/segresnet-brats-mlx/tree/main) · [Docs](https://github.com/MedMLX/segresnet-mlx/blob/main/README.md#quick-start) |
|
|
| | Input | Output | |
| | :--- | :--- | |
| | T1, T1ce, T2 + FLAIR · NIfTI | Brain tumor segmentation | |
|
|
| **Apple Silicon · Metal · Python 3.13 / 3.14** |
|
|
| ## Quick start |
|
|
| ```bash |
| uv venv --python 3.13 |
| source .venv/bin/activate |
| |
| repo="https://github.com/MedMLX/segresnet-mlx" |
| release="$repo/releases/download/v0.2.1" |
| uv pip install "$release/segresnet_mlx-0.2.1-py3-none-any.whl" |
| uv tool install huggingface-hub |
| |
| hf download MedMLX/segresnet-brats-mlx --local-dir models |
| ``` |
|
|
| Replace the example input paths with your own files. |
|
|
| ```python |
| from segresnet_mlx.medmlx import run |
| |
| result = run( |
| bundle='brats_mri_segmentation', |
| weights_path='models/segresnet-brats.safetensors', |
| output_dir='outputs', |
| t1c_path='T1gd.nii.gz', |
| t1_path='T1w.nii.gz', |
| t2_path='T2w.nii.gz', |
| flair_path='FLAIR.nii.gz', |
| ) |
| print(result["outputs"]) |
| ``` |
|
|
| All four MRI volumes must share the same voxel grid. |
|
|
| ## Use & license |
|
|
| For research and education. Not validated for clinical use. |
|
|
| Weights: [Apache-2.0](https://huggingface.co/MedMLX/segresnet-brats-mlx/blob/main/LICENSE). [Notices](https://huggingface.co/MedMLX/segresnet-brats-mlx/blob/main/NOTICE). |
|
|
