| user_config: null | |
| dataset: | |
| path: null | |
| initsurf_root: null | |
| split_file: /path/to/datasets/splits/dataset_split.csv | |
| split_name: test | |
| session_label: "01" | |
| space: "MNI152" | |
| # Multi-dataset mode. | |
| roots: | |
| HCP_YA: /path/to/datasets/hcpya-u100/derivatives/sc-preproc | |
| OASIS1: /path/to/datasets/oasis-1/derivatives/sc-preproc | |
| initsurf_roots: | |
| HCP_YA: /path/to/datasets/hcpya-u100/derivatives/sc-initsurf | |
| OASIS1: /path/to/datasets/oasis-1/derivatives/sc-initsurf | |
| surface_name: ["lh_pial", "lh_white", "rh_pial", "rh_white"] | |
| prob_clip_min: 0.0 | |
| prob_clip_max: 1.0 | |
| prob_gamma: 1.0 | |
| add_prob_grad: false | |
| inference: | |
| device: "cuda:0" | |
| batch_size: 1 | |
| num_workers: 2 | |
| log_level: "INFO" | |
| overwrite: true | |
| model: | |
| ckpt_path: /path/to/deform_best_rmse.pth | |
| strict_load: true | |
| c_in: 2 | |
| sigma: 1 | |
| n_steps: 8 | |
| inshape: [184, 224, 184] | |
| c_hid: [8, 16, 32, 64, 128, 128] | |
| geom_ratio: 0.5 | |
| geom_depth: 6 | |
| gn_groups: 8 | |
| gate_init: -3.0 | |
| outputs: | |
| out_root: null | |
| # Multi-dataset mode outputs. | |
| out_roots: | |
| HCP_YA: /path/to/datasets/hcpya-u100/derivatives/sc-deform | |
| OASIS1: /path/to/datasets/oasis-1/derivatives/sc-deform | |
| log_dir: /path/to/simcortex-runs/deform/exp01_hcpya+oasis1/logs_infer | |