SynET-Bilab/tomolens-model

TomoLens Models

Model bundles maintained by SynET-Bilab for TomoLens / SynapseSeg.

Model	Family	Scene	Preparation	Input processing	License
Multihead — Synapse / Intact Cell	multihead	synapse	intact_cell	IsoNet1	CC BY-NC 4.0
Multihead — Synapse / FIB	multihead	synapse	FIB	Not yet documented	CC BY-NC 4.0

Each bundle includes its own description, label definitions, inference configuration and file checksums. These models require their documented runtime; a hosted generic Transformers inference pipeline is not provided.

License

Licenses apply per model bundle. The multihead and IsoNet bundles listed here carry CC BY-NC 4.0. The nnInteractive-derived RoI model retains its original CC BY-NC-SA 4.0 license, including the ShareAlike condition. Consult each bundle's model card and included license notice. Runtime code and dependencies retain their respective licenses.

Preprocessing models

Model	Format	Recommended use	License
IsoNet1	ONNX	Deconvolution followed by IsoNet1 for pixel size >15 Å/voxel OR thickness >200 nm	CC BY-NC 4.0
IsoNet2	PyTorch checkpoint	Pixel size 12.18 Å/voxel; isonet2-n2n, unet-large, cube size 128	CC BY-NC 4.0

nnInteractive models

Model	Task	Pixel size	Supported prompts	License
RoI model	Synapse RoI / selected instance	68.57 Å/voxel	Points and 2D bounding boxes	CC BY-NC-SA 4.0