| # PLANT | |
| PLANT is a protein language model-based antigenic cartography model for seasonal influenza A/H3N2 viruses. | |
| ## How to use | |
| Please check the github repository: | |
| https://github.com/TheSatoLab/PLANT | |
| ## Google Colab notebook | |
| A Colab notebook for embedding your sequences of interest onto the antigenic map constructed by the full model is available at the following link: | |
| [](https://colab.research.google.com/drive/1sLE3ysElImtxBBIzlGHlFTdDo8_O5aoY?usp=sharing) | |
| ## Variants | |
| - **Original PLANT (v1.0)**: the original model used in the bioRxiv paper. | |
| - **PLANT_fixed (v1.1)**: fixed version with improved performance | |
| ## Changelog | |
| ## Variants | |
| - **Original PLANT (v1.0)**: the original model used in the bioRxiv paper | |
| - **PLANT_fixed (v1.1)**: fixed version with improved performance. Please use the model under **variants/PLANT_fixed/** | |
| ## License | |
| MIT License | |
| ## Citation | |
| Integrative modeling of seasonal influenza evolution via AI-powered antigenic cartography | |
| Jumpei Ito, Shusuke Kawakubo, Hiroaki Unno, Adam Strange, Spyros Lytras, Kaho Okumura, Alice Lilley, Ruth Harvey, Nicola Lewis, Kei Sato | |
| bioRxiv 2025.08.04.668423; doi: https://doi.org/10.1101/2025.08.04.668423 | |
| ## Contact | |
| jampei@g.ecc.u-tokyo.ac.jp (Jumpei Ito) | |