Release 0.1.0

2994426 verified 7 days ago

875 Bytes

tags:
  - porefm
  - pytorch
  - nanopore
  - dna
  - pretrained

PoreFM-DNA

Pretrained PoreFM model for Oxford Nanopore DNA signals.

Model version: 0.1.0. Chemistry: R10.4.1 (E8.2, 400 bps). Embedding dimension: 384.

File	Contents
`backbone.pt`	Backbone for embeddings and downstream tasks.
`pretraining.pt`	Backbone, pretraining objective heads, and EMA target encoder; optimizer and scheduler states are excluded.

Model configuration and preprocessing are embedded in the checkpoints. Setup and usage are documented in the PoreFM code repository.

manifest.json records artifact identities and tensor fingerprints. SHA256SUMS verifies checkpoint downloads. Tensor fingerprints are independent of descriptive metadata; file hashes identify exact bytes. Documentation-only changes leave the model version unchanged.