PeptideCLM-2
Collection
Official models and data for the PeptideCLM-2 paper. Please cite the manuscript: https://doi.org/10.1021/acs.jcim.6c00652 • 10 items • Updated • 1
PeptideMTR: MLM Variant
This model is part of the PeptideMTR suite, to be released in a forthcoming paper. It is designed for multi-target biochemical property prediction.
Overview
- Architecture: BERT-based Transformer
- Pretraining: MLM
- Input: SMILES string
All models in this suite are designed for simplicity. For inference, the model accepts a SMILES string directly.
Usage
Example scripts can be found at https://github.com/AaronFeller/PeptideMTR
Dataset
The training data and pre-computed 99 RDKit descriptors are available at PeptideMTR_training_data.
Citation
Please cite the forthcoming PeptideMTR paper for methodology and benchmark results.
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