Christina Theodoris

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New activity in ctheodoris/Geneformer about 2 months ago

device="cuda" hardcoded in emb_extractor.py and perturber_utils.py, breaks CPU-only inference

3

#592 opened 2 months ago by

dlgenomics

Use dynamic CUDA check instead of hardcoded device in emb_extractor.py

1

#593 opened 2 months ago by

dlgenomics

Use dynamic CUDA check instead of hardcoded device in perturber_utils.py

#594 opened 2 months ago by

dlgenomics

New activity in ctheodoris/Geneformer 2 months ago

Is cell-level train/validation/test splitting acceptable for Geneformer in silico perturbation?

1

#591 opened 2 months ago by

lifei116

Question about the color scale in Fig. 6b vs. plot_predictions()

1

#590 opened 2 months ago by

lishensuo

New activity in ctheodoris/Geneformer 3 months ago

Input data type for best results

1

#589 opened 3 months ago by

retract

New activity in ctheodoris/Geneformer 5 months ago

Unable to fine-tune model with n_hyperopt_trials > 0. cc.validate gets stuck

1

#587 opened 5 months ago by

Sheyiphunmi

Should n_counts reflect pre- or post–gene-symbol-to-Ensembl conversion when unmapped genes are removed?

1

#586 opened 5 months ago by

suanzaoren

updated a model 6 months ago

ctheodoris/Geneformer

Fill-Mask • 0.3B • Updated Sep 12 • 1.96k • • 323

updated a model 7 months ago

theodoris-lab/MaxToki

Updated Apr 23 • 24 • 6

New activity in ctheodoris/Geneformer 7 months ago

Update geneformer/mtl/model.py

2

#585 opened 7 months ago by

MajorasMeow

published a model 7 months ago

theodoris-lab/MaxToki

Updated Apr 23 • 24 • 6

updated a dataset 8 months ago

theodoris-lab/Genecorpus-104M

Viewer • Updated Mar 27 • 104M • 2.48k • 3

New activity in ctheodoris/Genecorpus-30M 8 months ago

Technical Dropout vs. Biological Silencing

1

#28 opened 8 months ago by

rgholami

New activity in ctheodoris/Geneformer 8 months ago

Multi task classifier, True values incorrect

2

#584 opened 8 months ago by

saranyabalachandran

Question regarding post-perturbation Cell × Embedding matrix extraction

1

#583 opened 8 months ago by

eastmancodes

published a dataset 9 months ago

theodoris-lab/Genecorpus-104M

Viewer • Updated Mar 27 • 104M • 2.48k • 3

New activity in ctheodoris/Geneformer 9 months ago

Setting max_layers_to_freeze overrun in MTLClassifier

5

#581 opened 9 months ago by

MajorasMeow

Update geneformer/mtl/train.py

1

#582 opened 9 months ago by

MajorasMeow

A MTLClassifier.load_and_evaluate_test_model error

➕ 1

1

#580 opened 9 months ago by

c57bl6j