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Beyond_Prompt-based_Retrieval

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  1. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000030_tree.txt +1 -0
  2. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000073_tree.txt +1 -0
  3. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000078_tree.txt +1 -0
  4. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000125_tree.txt +1 -0
  5. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000127_tree.txt +1 -0
  6. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000154_tree.txt +1 -0
  7. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000172_tree.txt +1 -0
  8. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000198_tree.txt +1 -0
  9. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000213_tree.txt +1 -0
  10. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000243_tree.txt +1 -0
  11. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000270_tree.txt +1 -0
  12. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000280_tree.txt +1 -0
  13. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000287_tree.txt +1 -0
  14. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000366_tree.txt +1 -0
  15. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000385_tree.txt +1 -0
  16. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000391_tree.txt +1 -0
  17. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000401_tree.txt +1 -0
  18. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000406_tree.txt +1 -0
  19. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000407_tree.txt +1 -0
  20. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000417_tree.txt +1 -0
  21. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000448_tree.txt +1 -0
  22. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000459_tree.txt +1 -0
  23. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000479_tree.txt +1 -0
  24. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000496_tree.txt +1 -0
  25. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000497_tree.txt +1 -0
  26. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000499_tree.txt +1 -0
  27. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000514_tree.txt +1 -0
  28. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000515_tree.txt +1 -0
  29. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000536_tree.txt +1 -0
  30. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000551_tree.txt +1 -0
  31. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000579_tree.txt +1 -0
  32. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000588_tree.txt +1 -0
  33. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000596_tree.txt +1 -0
  34. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000621_tree.txt +1 -0
  35. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000638_tree.txt +1 -0
  36. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000643_tree.txt +1 -0
  37. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000654_tree.txt +1 -0
  38. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000656_tree.txt +1 -0
  39. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000664_tree.txt +1 -0
  40. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000714_tree.txt +1 -0
  41. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000719_tree.txt +1 -0
  42. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000784_tree.txt +1 -0
  43. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000785_tree.txt +1 -0
  44. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000793_tree.txt +1 -0
  45. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000809_tree.txt +1 -0
  46. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000817_tree.txt +1 -0
  47. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000838_tree.txt +1 -0
  48. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000855_tree.txt +1 -0
  49. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000874_tree.txt +1 -0
  50. Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000900_tree.txt +1 -0
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000030_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_02189:0.0259167,((AS2_ACLBLIBL_00410:5e-09,(AS2_ACLBLIBL_00389:5e-09,AS2_ACLBLIBL_00393:0.0302627)n3:0.0101513)n2:0.0101082,(KBS0714_MOLHKGIG_00627:0.0101356,(SA211_MHAAABBN_00372:0,TT9_LFPAFLNI_00604:0)n5:5e-09)n4:5e-09)n1:0.0259167)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000073_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00321:0.42353,((KBS0714_MOLHKGIG_00216:0,SA211_MHAAABBN_02209:0,TT9_LFPAFLNI_00216:0)n2:0.154358,(AS2_ACLBLIBL_02206:0.72379,AS2_ACLBLIBL_00167:0.045757)n3:0.00508411)n1:0.844921)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000078_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_02454:0.0315262,((KBS0714_MOLHKGIG_00366:0.00457497,(SA211_MHAAABBN_00082:0.00154096,TT9_LFPAFLNI_00373:0.00154183)n3:0.0031645)n2:0.0199633,(AS2_ACLBLIBL_00193:1.16516,AS2_ACLBLIBL_02595:0.037521)n4:0.004169)n1:0.0483287)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000125_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_02311:0.00444868,((TT9_LFPAFLNI_00521:5e-09,(AS2_ACLBLIBL_02428:0.00892789,AS2_ACLBLIBL_01219:1.61464)n3:0.179404)n2:0.0301173,(SA211_MHAAABBN_00243:0.00592033,KBS0714_MOLHKGIG_00521:0.0118539)n4:5e-09)n1:0.00296109)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000127_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_02461:0.0259585,((AS2_ACLBLIBL_01252:1.21352,AS2_ACLBLIBL_02602:5e-09)n2:0.00852587,(KBS0714_MOLHKGIG_00359:5e-09,(SA211_MHAAABBN_00075:0.00420383,TT9_LFPAFLNI_00366:5e-09)n4:0.00421588)n3:0.00413123)n1:0.0259585)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000154_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01764:0.459075,((KBS0714_MOLHKGIG_01012:0,SA211_MHAAABBN_00726:0)n2:0.011003,(TT9_LFPAFLNI_00955:0.0190787,(AS2_ACLBLIBL_01877:0.0383644,AS2_ACLBLIBL_01876:0.0385183)n4:0.00427981)n3:0.0151453)n1:0.459075)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000172_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (((TT9_LFPAFLNI_02007:5e-09,(SA211_MHAAABBN_01774:0.0842955,SA211_MHAAABBN_00326:0.00616023)n3:0.00068447)n2:0.358886,KBS0714_MOLHKGIG_00614:0.0274874)n1:0.0739174,(KD337_NAFOICDF_00544:0.256101,KD337_NAFOICDF_00702:0.272871)n4:0.0739174)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000198_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00033:0.0731573,(AS2_ACLBLIBL_00055:0.0423063,(KBS0714_MOLHKGIG_00299:0.00137662,(SA211_MHAAABBN_00007:0.00413042,TT9_LFPAFLNI_00306:0.00551784)n3:0.00136414)n2:0.0270947)n1:0.0731573)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000213_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00063:0.140575,(AS2_ACLBLIBL_00080:0.41379,(TT9_LFPAFLNI_00273:0.00769185,(KBS0714_MOLHKGIG_00275:0.00384032,SA211_MHAAABBN_02290:0.00387337)n3:5e-09)n2:0.252276)n1:0.140575)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000243_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((AS2_ACLBLIBL_01863:0.525036,KD337_NAFOICDF_01752:0.197757)n1:0.366972,(AS2_ACLBLIBL_00149:0.869659,(KD337_NAFOICDF_01765:0.412877,KD337_NAFOICDF_01759:0.200242)n3:0.0222491)n2:0.317597)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000270_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (AS2_ACLBLIBL_00209:0.0102022,(TT9_LFPAFLNI_00190:0.00593087,(SA211_MHAAABBN_02020:1.43964,(KBS0714_MOLHKGIG_00190:6e-09,KBS0714_MOLHKGIG_00035:0.808041)n3:0.0897823)n2:0.617169)n1:0.0102022)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000280_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00169:0.650968,(AS2_ACLBLIBL_00223:0.0149304,(SA211_MHAAABBN_02174:0.0251951,(KBS0714_MOLHKGIG_00178:0.00601323,TT9_LFPAFLNI_00175:0.0510235)n3:0.0144957)n2:0.0428155)n1:0.650968)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000287_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00173:0.0190152,(AS2_ACLBLIBL_00238:0.0290484,(KBS0714_MOLHKGIG_00146:0.00886671,(TT9_LFPAFLNI_00154:0.00873807,SA211_MHAAABBN_02160:5e-09)n3:0.00273496)n2:0.0440574)n1:0.0190152)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000366_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00301:0.125032,(AS2_ACLBLIBL_00360:0.109715,(SA211_MHAAABBN_02053:0.00347483,(KBS0714_MOLHKGIG_00040:0.00648055,TT9_LFPAFLNI_00035:0.00983506)n3:0.00629262)n2:0.0960354)n1:0.125032)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000385_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_02195:0,(KBS0714_MOLHKGIG_00634:0.00404248,(TT9_LFPAFLNI_00597:0.024634,(AS2_ACLBLIBL_00406:0,AS2_ACLBLIBL_00753:1.25722)n3:0.139691)n2:5e-09)n1:5e-09)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000391_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00373:0.0846994,(AS2_ACLBLIBL_00420:0.0477243,((KBS0714_MOLHKGIG_00004:0,SA211_MHAAABBN_02009:0)n3:0.00539401,TT9_LFPAFLNI_00004:6e-09)n2:0.0223467)n1:0.0846994)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000401_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00383:0.0608184,(AS2_ACLBLIBL_00430:0.0287768,(SA211_MHAAABBN_01999:0.00929069,(KBS0714_MOLHKGIG_02306:0.00928589,TT9_LFPAFLNI_02247:6e-09)n3:0.00308033)n2:0.036198)n1:0.0608184)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000406_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00393:0.0367796,(AS2_ACLBLIBL_00440:0.0231874,(KBS0714_MOLHKGIG_02296:0.00546354,(SA211_MHAAABBN_01989:0.00538894,TT9_LFPAFLNI_02237:5e-09)n3:0.00259871)n2:0.0130266)n1:0.0367796)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000407_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00394:0.124766,(AS2_ACLBLIBL_00441:0.0767483,(KBS0714_MOLHKGIG_02295:0.00479375,(SA211_MHAAABBN_01988:0.00198921,TT9_LFPAFLNI_02236:0.00614383)n3:0.0033759)n2:0.097513)n1:0.124766)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000417_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00404:0.104153,(AS2_ACLBLIBL_00451:0.0273051,(SA211_MHAAABBN_01977:5e-09,(KBS0714_MOLHKGIG_02286:0.00553803,TT9_LFPAFLNI_02225:0.00554589)n3:5e-09)n2:0.00692559)n1:0.104153)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000448_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00483:0.228641,(AS2_ACLBLIBL_00554:0.150307,(KBS0714_MOLHKGIG_02190:0.00571122,(SA211_MHAAABBN_01904:0.00246313,TT9_LFPAFLNI_02135:0.00981838)n3:0.00411855)n2:0.129918)n1:0.228641)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000459_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00502:0.0909285,(AS2_ACLBLIBL_00575:0.27041,(KBS0714_MOLHKGIG_02177:0.0130392,(SA211_MHAAABBN_01891:0.00679946,TT9_LFPAFLNI_02122:0.0159158)n3:0.021478)n2:0.155009)n1:0.0909285)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000479_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00540:0.210927,((SA211_MHAAABBN_01858:0.0083631,TT9_LFPAFLNI_02088:0.00361057)n2:0.129259,(AS2_ACLBLIBL_02658:0.305772,AS2_ACLBLIBL_00616:0.0977326)n3:0.0108592)n1:0.167231)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000496_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00567:0.00296408,(AS2_ACLBLIBL_00651:0.00197205,(KBS0714_MOLHKGIG_02129:0.00591124,(SA211_MHAAABBN_01837:6e-09,TT9_LFPAFLNI_02067:0.00394418)n3:0.00198084)n2:0.00196844)n1:0.00296408)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000497_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00568:0.00843566,(AS2_ACLBLIBL_00652:0.00279141,(KBS0714_MOLHKGIG_02128:0.00291319,(SA211_MHAAABBN_01836:0,TT9_LFPAFLNI_02066:0)n3:5e-09)n2:0.00984367)n1:0.00843566)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000499_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00570:0.0132927,(AS2_ACLBLIBL_00654:0.00659911,(SA211_MHAAABBN_01834:5e-09,(KBS0714_MOLHKGIG_02126:0.00657533,TT9_LFPAFLNI_02064:0.0132028)n3:5e-09)n2:6e-09)n1:0.0132927)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000514_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00590:0.154457,(AS2_ACLBLIBL_00674:0.109146,((KBS0714_MOLHKGIG_02105:0,SA211_MHAAABBN_01812:0)n3:0.00139466,TT9_LFPAFLNI_02045:0.00217604)n2:0.0670327)n1:0.154457)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000515_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00593:0.0596395,(AS2_ACLBLIBL_00675:0.0696917,((KBS0714_MOLHKGIG_02104:0,SA211_MHAAABBN_01811:0)n3:0.00346965,TT9_LFPAFLNI_02044:5e-09)n2:0.0710451)n1:0.0596395)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000536_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00126:0.156873,(AS2_ACLBLIBL_00769:0.0715487,(KBS0714_MOLHKGIG_02053:0.0108684,(SA211_MHAAABBN_01759:0.0124085,TT9_LFPAFLNI_01987:0.0108014)n3:0.00542294)n2:0.0748798)n1:0.156873)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000551_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00759:0.00340125,(AS2_ACLBLIBL_00798:0.0852773,(KBS0714_MOLHKGIG_02021:5e-09,(SA211_MHAAABBN_01730:0.0066719,TT9_LFPAFLNI_01958:0.0136659)n3:0.00685394)n2:5e-09)n1:0.00340125)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000579_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00812:0.00356751,((AS2_ACLBLIBL_00877:0.342412,KBS0714_MOLHKGIG_01981:6e-09)n2:0.00177257,(SA211_MHAAABBN_01675:0.00177863,TT9_LFPAFLNI_01907:5e-09)n3:0.00178198)n1:0.00356751)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000588_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00832:0.167712,(SA211_MHAAABBN_01662:5e-09,(TT9_LFPAFLNI_01894:0.0236553,(AS2_ACLBLIBL_00891:0.0229202,KBS0714_MOLHKGIG_01968:0.0254241)n3:0.0071641)n2:0.00760877)n1:0.167712)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000596_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00851:0.0046209,((SA211_MHAAABBN_01639:5e-09,TT9_LFPAFLNI_01862:0.00371045)n2:0.0037767,(AS2_ACLBLIBL_00913:0.0780708,KBS0714_MOLHKGIG_01943:0.00863567)n3:0.0025639)n1:0.0046209)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000621_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00891:0.00514959,(AS2_ACLBLIBL_00951:0.0102183,((KBS0714_MOLHKGIG_01907:0,SA211_MHAAABBN_01603:0)n3:5e-09,TT9_LFPAFLNI_01827:5e-09)n2:0.0102511)n1:0.00514959)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000638_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00912:0.156789,(AS2_ACLBLIBL_00974:0.0834128,((KBS0714_MOLHKGIG_01884:0,TT9_LFPAFLNI_01804:0)n3:0.0184795,SA211_MHAAABBN_01580:0.0229641)n2:0.172417)n1:0.156789)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000643_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00921:0.0241286,((SA211_MHAAABBN_01572:0.00471145,TT9_LFPAFLNI_01796:0.00464167)n2:0.00356658,(AS2_ACLBLIBL_00983:0.00434436,KBS0714_MOLHKGIG_01876:0.00812546)n3:0.00321643)n1:0.0241286)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000654_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00933:0.133215,(AS2_ACLBLIBL_00995:0.081023,(SA211_MHAAABBN_01561:0.00491776,(KBS0714_MOLHKGIG_01865:5e-09,TT9_LFPAFLNI_01785:0.00722093)n3:0.0022837)n2:0.0699369)n1:0.133215)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000656_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00936:0.225682,(AS2_ACLBLIBL_00997:0.0778884,(TT9_LFPAFLNI_01783:5e-09,(SA211_MHAAABBN_01559:0.0232622,KBS0714_MOLHKGIG_01863:0.00252254)n3:0.00250686)n2:0.108456)n1:0.225682)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000664_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_00951:0.0937729,(AS2_ACLBLIBL_01007:0.0602797,(SA211_MHAAABBN_01553:0.00252671,(KBS0714_MOLHKGIG_01857:0.00253226,TT9_LFPAFLNI_01777:0.00758414)n3:0.00253609)n2:0.0285645)n1:0.0937729)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000714_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01015:0.134621,((SA211_MHAAABBN_01494:0.00200052,TT9_LFPAFLNI_01716:5e-09)n2:5e-09,(KBS0714_MOLHKGIG_01787:0.00602665,AS2_ACLBLIBL_01089:0.00435728)n3:0.00199761)n1:0.134621)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000719_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01020:0.365818,(AS2_ACLBLIBL_01097:0.166573,(SA211_MHAAABBN_01488:0.00433275,(KBS0714_MOLHKGIG_01781:5e-09,TT9_LFPAFLNI_01710:0.00351566)n3:0.00991492)n2:0.0874962)n1:0.365818)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000784_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01101:0.0153161,(AS2_ACLBLIBL_01171:0.0131224,(KBS0714_MOLHKGIG_01707:0,SA211_MHAAABBN_01414:0,TT9_LFPAFLNI_01636:0)n2:0.0137886)n1:0.0153161)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000785_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01102:0.0191937,(AS2_ACLBLIBL_01172:0.00748055,(KBS0714_MOLHKGIG_01706:0,SA211_MHAAABBN_01413:0,TT9_LFPAFLNI_01635:0)n2:5e-09)n1:0.0191937)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000793_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01110:0.0751001,(AS2_ACLBLIBL_01180:0.0357574,(KBS0714_MOLHKGIG_01698:0.00354723,(SA211_MHAAABBN_01405:5e-09,TT9_LFPAFLNI_01627:0.0070171)n3:0.00700806)n2:0.070247)n1:0.0751001)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000809_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01128:0.0669058,(AS2_ACLBLIBL_01200:0.0540152,((KBS0714_MOLHKGIG_01678:0,SA211_MHAAABBN_01383:0)n3:0.00475759,TT9_LFPAFLNI_01608:0.00526659)n2:0.0340536)n1:0.0669058)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000817_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01136:0.0585675,(AS2_ACLBLIBL_01208:0.00727363,(KBS0714_MOLHKGIG_01670:0.00265228,(SA211_MHAAABBN_01375:0.00271818,TT9_LFPAFLNI_01600:0.00530175)n3:5e-09)n2:0.00900774)n1:0.0585675)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000838_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01158:0.0977231,(AS2_ACLBLIBL_01247:0.160746,(KBS0714_MOLHKGIG_01646:0.0100722,(SA211_MHAAABBN_01351:0.00996988,TT9_LFPAFLNI_01576:5e-09)n3:5e-09)n2:0.0877798)n1:0.0977231)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000855_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01181:0.0627943,(SA211_MHAAABBN_01332:0.115681,(AS2_ACLBLIBL_01271:0.0950423,(KBS0714_MOLHKGIG_01626:5e-09,TT9_LFPAFLNI_01555:0.00622469)n3:0.0533561)n2:0.0708003)n1:0.0627943)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000874_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01241:0.0850642,(AS2_ACLBLIBL_01348:0.0855369,(KBS0714_MOLHKGIG_01576:0.00333276,(SA211_MHAAABBN_01286:0.0031847,TT9_LFPAFLNI_01503:5e-09)n3:0.00304149)n2:0.134237)n1:0.0850642)n0;
Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Resolved_Gene_Trees/OG0000900_tree.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (KD337_NAFOICDF_01270:0.0902753,(AS2_ACLBLIBL_01379:0.0648349,((KBS0714_MOLHKGIG_01546:0,SA211_MHAAABBN_01256:0)n3:0.0203694,TT9_LFPAFLNI_01473:0.0114445)n2:0.0412066)n1:0.0902753)n0;