Add files using upload-large-folder tool

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000002.fa

@@ -0,0 +1,113 @@
+>AS2_ACLBLIBL_00757
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>AS2_ACLBLIBL_01280
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRIAAEGTWDTVLATLTAAADAQGLVDWSVSVDSTIARAHQHATNTTRHTGGW
+IELQESA
+>AS2_ACLBLIBL_01303
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>AS2_ACLBLIBL_01313
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRIAAEGTWDTVLATLTAAADAQGLVDWSVSVDSTIARAHQHATNTTRHTGGW
+IELQESA
+>AS2_ACLBLIBL_01318
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRIAAEGTWDTVLATLTAAADAQGLVDWSVSVDSTIARAHQHATNTTRHTGGW
+IELQESA
+>AS2_ACLBLIBL_02332
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>AS2_ACLBLIBL_02348
+MSRFQMLSDAQWELIAPMLPTRTGRPGRPFTGARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>AS2_ACLBLIBL_02630
+MSRFQMLSDAQWELIAPMLPTRTGRPGRPFTGARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KBS0714_MOLHKGIG_01069
+MFRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRGLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KBS0714_MOLHKGIG_01387
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KD337_NAFOICDF_00316
+MSRFQTLSDAQWELIAPMLPARTGRQGRPFADARTMVEAIIYRYRCGIPWRDLPEVYGPW
+QTVWTWHRRMAEEGTWDTVLATLTAAADAEGLIDWSVAVDSTIARAHQHATNTTRLTGGW
+IELQESA
+>KD337_NAFOICDF_00621
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRMAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+IELQESA
+>KD337_NAFOICDF_00626
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRMAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+IELQESA
+>KD337_NAFOICDF_01795
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KD337_NAFOICDF_01837
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KD337_NAFOICDF_02208
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KD337_NAFOICDF_02231
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFSDARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDAVLARLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+>SA211_MHAAABBN_00320
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>SA211_MHAAABBN_00332
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFSDARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDAVLARLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+>SA211_MHAAABBN_00787
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>SA211_MHAAABBN_01117
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATSITRHTGGW
+IELQESA
+>SA211_MHAAABBN_01328
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>SA211_MHAAABBN_01659
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+>SA211_MHAAABBN_02266
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>TT9_LFPAFLNI_00113
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+>TT9_LFPAFLNI_01019
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFSDARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDAVLARLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>TT9_LFPAFLNI_01540
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+VELQESA
+>TT9_LFPAFLNI_01883
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000003.fa

@@ -0,0 +1,131 @@
+>AS2_ACLBLIBL_00758
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_01281
+------------------------------------------------------------
+-----------------------------------------MLLPLLGQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_01304
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPAGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_01312
+------------------------------------------------------------
+-----------------------------------------MLLPLLGQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_01317
+------------------------------------------------------------
+-----------------------------------------MLLPLLGQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>AS2_ACLBLIBL_02331
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_02347
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGSAGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_02614
+------------------------------------------------------------
+---------------------------------------------------MTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_02631
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGSAGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKALSDTP
+>KBS0714_MOLHKGIG_01068
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPIGLDADAYKG
+RNVIERQYAHLKPWRGLATRYDKYAIIYRAAVVLNAVIAWSKRLSDMP
+>KBS0714_MOLHKGIG_01386
+------------------------------------------------------------
+--------------------MDGTGLPLVSLITPGQAGDSPMLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>KBS0714_MOLHKGIG_02280
+MAAEGTWDTVLTKLTAATDAQGLVDWSVSVDSTIARAHQHATNTTGTQGDRSSDTNLREE
+PANHGVGRSRGGLSTKIHQLVDGAGMPLVNLITPGQAGDSPMLLPLLEQLRVARPVGRTR
+TRPEAVLGDKAYSSQPVRAHLRARRIKAVIPEPADPRGHRKRSGPRGGRPVGPDAAAYKG
+RNVIERQYAHLKQWRRLATRYDKYATVYRAAVLLNAVTAWSKLLSDTP
+>KD337_NAFOICDF_00317
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPAGRPR
+TRPDAVLGDKAYSSRAIRAHLRSRRIRAVIPEPADQRGHRRRRGPRGGRPVGLDATAYKG
+RNVIERRYAHLKQWRGLATRYDKYSIVYRAAVVLNAVLAWSKRLSDMP
+>KD337_NAFOICDF_00625
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVISEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>KD337_NAFOICDF_01796
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARRIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>KD337_NAFOICDF_01836
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARRIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>KD337_NAFOICDF_02207
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARRIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>SA211_MHAAABBN_00319
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDAAAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>SA211_MHAAABBN_00788
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>SA211_MHAAABBN_01116
+------------------------------------------------------------
+-----------------------------------------MLLPLLAQLRVTRPVGRPR
+TRPAAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>SA211_MHAAABBN_01327
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>SA211_MHAAABBN_01658
+------------------------------------------------------------
+--------------------MDGTGLPLVSLITPGQAGDSPMLLPLLEQLRVTRPVGRPR
+TRPAAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>SA211_MHAAABBN_02267
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDAAAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>TT9_LFPAFLNI_00114
+------------------------------------------------------------
+--------------------MDGTGLPLVSLITPGQAGDSPMLLPLLEQLRVTRPVGRPR
+TRPAAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>TT9_LFPAFLNI_01539
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>TT9_LFPAFLNI_01884
+------------------------------------------------------------
+--------------------MDGTGLPLVSLITPGQAGDSPMLLPLLAQLRVTRPVGRPR
+TRPAAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDAAAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000004.fa

@@ -0,0 +1,226 @@
+>AS2_ACLBLIBL_00228
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------MVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>AS2_ACLBLIBL_00229
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEAPKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYA----------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------
+>AS2_ACLBLIBL_00643
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEAPKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>AS2_ACLBLIBL_00895
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------MVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>AS2_ACLBLIBL_00899
+MT----------------DTADAQNPLAGVLSADQVDALVNAAEDLGEGRHGVEELLSRM
+TQAVLERALETEMSEHLGYEAGDPAGAGTGNSRNGKT--TKSVQTLQGPGQITVPRDRNG
+SFEPVIVPKRSRRLGRVEDMILSLYARGMTTRDIGSHLEEIYGSKVSAATISRVTDVVAD
+EVAQWQSRPLETVYPIVYIDAIWLKIRDGGVVTNKACHVAVGVDLEGRKQVLGLWLGVSE
+GAKFWANVLTEIRNRGTKDILILCCDGLSGLPAAVNSIYPETVVQTCVVHLLRSAMKYAS
+YADRKTMAKDMRPIYTAATVEAAQLALEAF-AEIWQTKAPGAVLAWRTAWEDFIPFLAFT
+PEIRKVIYTTNQIESINYQLRKITKTRGSFPSDEAAIKLVYLGIRNIETRRGGEL-----
+--------------GTGTQGWHQALNAFAVQFPNRL-P-L
+>AS2_ACLBLIBL_01506
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEAPKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>AS2_ACLBLIBL_02100
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYGKGSEDASKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KBS0714_MOLHKGIG_00376
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KBS0714_MOLHKGIG_01393
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KBS0714_MOLHKGIG_02069
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTP--------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------LTQTS-------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------
+>KBS0714_MOLHKGIG_02112
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KBS0714_MOLHKGIG_02277
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KD337_NAFOICDF_01829
+MSESTTEMTGPMIDPVTGEIIDQKDLAEQ---------LLAQAKEQGVRLVGPGGLLNQL
+TKNVLETALEAELTEHLGHDHGQTPIA--ANMRNGTR--SKTVLTEIGPVEIEVPRDRDG
+SFEPVIVPKRKRRLDGTDQIVLSLSARGLTTGEIAVHFEEVYGAKVSKDTISRITEKVAG
+ELAEWSSRPLD-------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------------P-L
+>SA211_MHAAABBN_00355
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_01012
+------------------------------------------------------------
+---------------------------------MGRTQWPLT----------DVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_01015
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVCK----
+--RP--------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------
+>SA211_MHAAABBN_01125
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_01746
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_01819
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_02016
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_00116
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_01547
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_01549
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_01880
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_01974
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000009.fa

@@ -0,0 +1,112 @@
+>KBS0714_MOLHKGIG_00712
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>KBS0714_MOLHKGIG_01400
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>KBS0714_MOLHKGIG_01503
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVGRRPGLPAHRRRPPHRD------AHRHRPGHRR
+LGRPRYLQHRGGSPVSIHTPNTAAPAR
+>KBS0714_MOLHKGIG_02228
+--------------------------------------------------------------------------------
+---------------------------------MHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_00091
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_00344
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_01014
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_01393
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_02283
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_00607
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_01017
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_01157
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_01350
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_02163
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000010.fa

@@ -0,0 +1,118 @@
+>AS2_ACLBLIBL_00108
+ML----------------------------------------------------------
+----------------------ILWRQRVWRCAEPGCARGTFVEQLPSLVAPRGSITTRA
+ISWAIGQLRREHGTIAGLARQLGTSWKTLWRAIRPE-LEHLADDESRFEGVTSLGVDEHI
+WHHVDRRR-----RGPRELTGMVDLSRDEHGRVRARLLDLVPGRSGKAYAGWLAERGDAF
+RRGVQVAALDPFAGYKTAIDQRLDDATAVLDAFHVVKLGTQVVDEVRRRVQQATLGHRGR
+KGDPLYGIQTILRAGAEHLTDKQLARLAAAIESDPAHEEVFVAWQCAQDLRAAYRSGNLA
+DGRAIAERLADSLHTS---PIPEVARLGRTLRRWRAAFLAYFTTNRSSNGGTEAINGIIE
+LHRRLARGFRNRDNYRLRMLLAAGGLTP-------
+>AS2_ACLBLIBL_00508
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------MVDLSRDEHGRVRARLLDLVPGRSGKAYAGWLAERGDAF
+RRGVQVAALDPFAGYKTAIDQRLDDATAVLDAFHVVKLGTQVVDEVRRRVQQATLGHRGR
+KGDPLYGIQTILRAGAEHLTDKQLARLAAAIESDPAHEEVFVAWQCAQDLRAAYRSGNLA
+DGRAIAERLADSLHTS---PIPEVARLGRTLRRWRAAFLAYFTTNRSSNGGTEAINGIIE
+LHRRLARGFRNRDNYRLRMLLAAGGLTP-------
+>AS2_ACLBLIBL_00509
+ML----------------------------------------------------------
+----------------------ILWRQRVWRCAEPGCARGTFVEQLPSLVAPRGSITTRA
+ISWAIGQLRREHGTIAGLARQLGTSWKTLWRAIRPE-LEHLADDESRFEGVTSLGVDEHI
+WHHVDRRR-----RGPKS------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------
+>AS2_ACLBLIBL_01091
+ML----------------------------------------------------------
+----------------------ILWRQRVWRCAEPGCARGTFVEQLPSLVAPRGSITTRA
+ISWAIGQLRREHGTIAGLARQLGTSWKTLWRAIRPE-LEHLADDESRFEGVTSLGVDEHI
+WHHVDRRR-----RGPKS------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------
+>AS2_ACLBLIBL_01092
+MT-------------------RSG------------------------------------
+----------------------VACRSRRW---------------------------TRS
+C-----------------------------------------------------------
+------------------------------------------------------------
+-------------GYKTAIDQRLDDATAVLDAFHVVKLGTQVVDEVRRRVQQATLGHRGR
+KGDPLYGIQTILRAGAEHLTDKQLARLAAAIESDPAHEEVFVAWQCAQDLRAAYRSGNLA
+DGRAIAERLADSLHTS---PIPEVARLGRTLRRWRAAFLAYFTTNRSSNGGTEAINGIIE
+LHRRLARGFRNRDNYRLRMLLAAGGLTP-------
+>KBS0714_MOLHKGIG_00454
+MLHPTF---ATPDLTTFCRLDELGL----VAVGQLIEPDRATIECRVVEDDPWCRKCGVE
+GVPRDTVTRRLAHEPFGHRPTTLLVRVRRYRCG--HCRR-TWRQDMTRAAAPRAKISRGG
+LEWALRGIVIDHLTVTRVAAGLGVSWSAANAAVLAEGKRRLIDDPARFDGVTTIGVDEHV
+WRHTR--------LGDKYVTVIIDLTPARNKTGPARLLDMVEGRSKAVFKQWLAARPADW
+AKRIEVVAMDGFAGFKTAAAEELPDAVPVMDPFHVVRLAGDALDVCRRRVQQDTTGHRGL
+KGDPLYKARRTLHTGASLLTDRQRARLDAVF-ASEEHIEVEATWGIYQRIVAAYREPDKK
+KAKAMMQEVIATISSGVPAALVEVRKLGRTMKQRAGDILAFFDRPGTSNGPTEAINGRLE
+HLRGSALGFRNLTHYIARSLLEAGGFRPALHPRS-
+>KBS0714_MOLHKGIG_00845
+M-----------------------------------------------------------
+---------------------------RRYRCS--GCGY-VWRQDTTASAEPRAKLSRRA
+LRWALEGIVVQHLTVARVAEGLGVAWDTANDAVLAEGKRVLIDEEHRFEGVKVVGVDEHV
+WRHTR--------RGDRYVTVIIDLTPVRDGTGPARLLNMVEGRSKQAFKTWLADRPQDW
+RDGVEVVAMDGFTGFKTAAVEELPDVVTVLDPFHVTRLAGEALDECRRRVQQAICGHRGR
+KGDPLYAARRTLSTGVDLLNDKQKDRLDTLF-ADDAHVEVEVTWSVYQRMIAAYRHENRR
+HGRELMARLIDSISTGVPKALVEITKLGRTLKKRAADVLAYFDRPSTSNGPTEAINGRLE
+HLRGSALGFRNLTNYIARSLLETGGFRPRLHPGFG
+>KBS0714_MOLHKGIG_01392
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------MSLLTDRQEEHLSVLF-AHEKHAAVEAAWEIYQAMVAAYREFDRA
+KAKAKMEKVIAALSKKVPDTLEELGKLGRTLTKRAADVLAFFERLGTSNGPTEAINGRLE
+HLRGSALGFRNLTNYIARSLLESGGFRPLLHPQMR
+>KD337_NAFOICDF_00630
+MPEPTLYCRARGDYCTCCDL-LVGLPGLHVLTAERDDHDRLVVTVESAPEPMGCRSCGVI
+ARGHGRIEVSLVDAPAFGRPVRIIWRKRRWLCPDPACEVGSFIEQDEKVAAPRAVLTTRA
+CRWAIEQIRREHASVNGIRRQLGTGWRTVWDSIQPL-LQAADEDPSRFEGVAILGVDEHV
+WHHVSTKPIHHGGRGPKELTGMVDLTRDEGGRTRARLLDLVPGRSGRVYKDWLDQRGDAF
+RARIEVATLDPFHGYKNAIDDQLEDARSVLDAFHVVKLATTVVDDVRRRVQQQIHGHRGR
+KSDPLYRVRNVLRAGAENLTDRQRDRLETAWAAHEQHIEVEIAWLCAQKVRSAYRQGTHA
+AGRAVAEKILATFTSC---PIPEVARLGKTLNRWRREFLGYFDTNGASNGGTEAINGLIE
+LHRRIARGFRNRDNYRLRMLLIGGGLDMTHHTQR-
+>KD337_NAFOICDF_00638
+MPEPTLYCRARGDYCTCCDL-LVGLPGLHVLTAERDDHDRLVVTVESAPEPMGCRSCGVI
+ARGHGRIEVSLVDAPAFGRPVRIIWRKRRWLCPDPACEVGSFIEQDEKVAAPRAVLTTRA
+CRWAIEQIRREHASVNGIRRQLGTGWRTVWDSIQPL-LQAADEDPSRFEGVAILGVDEHV
+WHHVSTKPIHHGGRGPKELTGMVDLTRDEGGRTRARLLDLVPGRSGRVYKDWLDQRGDAF
+RARIEVATLDPFHGYKNAIDDQLEDARSVLDAFHVVKLATTVVDDVRRRVQQQIHGHRGR
+KSDPLYRVRNVLRAGAENLTDRQRDRLETAWAAHEQHIEVEIAWLCAQKVRSAYRQGTHA
+AGRAVAEKILATFTSC---PIPEVARLGKTLNRWRREFLGYFDTNGASNGGTEAINGLIE
+LHRRIARGFRNRDNYRLRMLLIGGGLDMTHHTQR-
+>KD337_NAFOICDF_00839
+MPEPTLYCRARGDYCTCCDL-LVGLPGLHVLTAERDDHDRLVVTVESAPEPMGCRSCGVI
+ARGHGRIEVSLVDAPAFGRPVRIIWRKRRWLCPDPACEVGSFIEQDEKVAAPRAVLTTRA
+CRWAIEQIRREHASVNGIRRQLGTGWRTVWDSIQPL-LQAADEDPSRFEGVAILGVDEHV
+WHHVSTKPIHHGGRGPKELTGMVDLTRDEGGRTRARLLDLVPGRSGRVYKDWLDQRGDAF
+RARIEVATLDPFHGYKNAIDDQLEDARSVLDAFHVVKLATTVVDDVRRRVQQQIHGHRGR
+KSDPLYRVRNVLRAGAENLTDRQRDRLETAWAAHEQHIEVEIAWLCAQKVRSAYRQGTHA
+AGRAVAEKILATFTSC---PIPEVARLGKTLNRWRREFLGYFDTNGASNGGTEAINGLIE
+LHRRIARGFRNRDNYRLRMLLIGGGLDMTHHTQR-
+>SA211_MHAAABBN_01124
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------MSLLTDRQKEHLSVLF-AHEKHAAVEAAWEIYQAMVAAYREFDRA
+KAKAKMEKVIAALSKKVPDTLEELGKLGRTLTKRAADVLAFFERLGTSNGPTEAINGRLE
+HLRGSALGFRNLTNYIARSLLESGGFRPLLHPQTR
+>TT9_LFPAFLNI_01343
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------MSLLTDRQKEHLSVLF-AHEKHAAVEAAWEIYQAMVAAYREFDRA
+KAKAKMEKVIAALSKKVPDTLEELGKLGRTLTKRAADVLAFFERLGTSNGPTEAINGRLE
+HLRGSALGFRNLTNYIARSLLESGGFRPLLHPQMR
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000011.fa

@@ -0,0 +1,53 @@
+>AS2_ACLBLIBL_00719
+-----------------------MLTITSRLEVMNRLGRAMADPTRSRIILTLLDHPAYP
+AELARDLDLTRPNVSNHLACLRDCGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVD
+EDAPCIDPACSLPGCDAAGEGA-
+>AS2_ACLBLIBL_00727
+-----------------------MLTIASRLDVMNRLGRAMADPTRSRILMTLLEGPSYP
+AVLARDLGLTRSNVSNHLTCLRDCGIVVAEPEGRQTRYEIADPHLGAAMTALVEVTLAVD
+ENAPCVDATCTVPGCCPSGTVA-
+>AS2_ACLBLIBL_02366
+-----------------------MLTVASRLDVMNRLGRAMADPTRSRILMTLLDGPSYP
+AVLSRELELTRSNVSNHLTCLRDCGIVVAEPEGRQTRYEIADPHLAAALTALVDVTLAVD
+EHAPCVDSSCTVPGCCGTGAGE-
+>KBS0714_MOLHKGIG_00609
+-----------------------MLTIATRLDVMNRLGRAMADPTRSRILLNLLEGPGYP
+AELAQALGLTRSNVSNHLACLRDCGIVAAEHQGRRTRYAIVDAHLARALSALLEVTLAVD
+ASAPCLDPGCPVPGCCDTGQVAS
+>KBS0714_MOLHKGIG_00616
+-----------------------MMTIASRLDVMNRLGRALADPTRSRIILTLLDHPAYP
+AELARDLDLTRPNVSNHLACLRDCGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVD
+EDAPCIDPACSLPGCDAAGEGA-
+>KBS0714_MOLHKGIG_02074
+----------------------------------------MADPTRSRILMTLLERPAYP
+AELARDLGLTRSNVSNHLACLRDCGIAVAVAEGRQTRYEIADAHLARALTALVEVTLAVD
+ESAPCIDPACSLPGCDAAGEGA-
+>SA211_MHAAABBN_00339
+-----------------------MMTIASRLDVMNRLGRALADPTRSRIILTLLDHPAYP
+AELARDLDLTRPNVSNHLACLRDCGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVD
+EDAPCIDPACSLPGCDAAGEGA-
+>SA211_MHAAABBN_00350
+MQMCRYQQREPHTRGQQVLYAQRMLTIASRLDVMNRLGRAMADPTRSRILMTLLEGPSYP
+AVLARDLGRV--------------------------------------------------
+-----------------------
+>SA211_MHAAABBN_00789
+MQMCRYQQREPHTRGQQVLYAQRMLTIASRLDVMNRLGRAMADPTRSRILMTLLEGPSYP
+AVLARDLGHV--------------------------------------------------
+-----------------------
+>SA211_MHAAABBN_01769
+-----------------------MLTIATRLDVMNRLGRAMADPTRSRILLSLLEGPGYP
+AELAQALGLSRSNVSNHLACLRDCGIVAVEHQGRRTRYAIVDAHLARALSSLLEVTLAVD
+ASAPCLDPGCPVPRCCDTAEVAS
+>SA211_MHAAABBN_01779
+-----------------------MMTIASRLDVMNRLGRALADPTRSRIILTLLDHPAYP
+AELARDLDLTRPNVSNHLACLRDCGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVD
+EDAPCIDPACSLPGCDAAGEGA-
+>TT9_LFPAFLNI_02002
+----------------------------------------MADPTRSRILMTLLERPAYP
+AELARDLGLTRSNVSNHLACLRDCGIAVAVAEGRQTRYEIADAHLARALTALVEVTLAVD
+ESAPCLDPACSVPGCCEKGVGA-
+>TT9_LFPAFLNI_02005
+M----------------------STTTLTHVSALSRLGHALSDDTRTRILLALRDGPARP
+SALAGELGVSKQVMSNQLACLRGCGLVTTTAEGRNVWYALADPRLGQTLGELLELTLTID
+PD------CCSAAGCTCA-----
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000015.fa

@@ -0,0 +1,91 @@
+>AS2_ACLBLIBL_01106
+-----MTERPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVNALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAWLD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGAGGVRPTDETVDYPVQAVYRAVGYFGSPLDGVEFDAARGVVPNDEGRVLDA
+DGVPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDVDGLWTAQDPAEESVIDLLEA
+REVPYTTWEGWQALDAHEKSLGAQATEAGPVERERVKVVDREEMTRISREGAWAPTA-
+>AS2_ACLBLIBL_01897
+MTLTPSSPKPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVNALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAWLD
+VPGVELAGSYGGADFASWYDGHPDVPRHWPLDATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDREQSASRRLHLHFLQAPEQFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAVYRAVGYFGSPLDGVEFDAARGVVPNDEGRVLDA
+DGVPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVRYTTWAGWLALDDHEKALGVQATEAGPVERERVKVVDREEMTRISRESVLLGAGG
+>KBS0714_MOLHKGIG_00992
+--MTPTPSRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEQFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAVYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWRAQEPSEESVIELLES
+RGVPYTTWAGWHALDEHEKSLGVQATEAGPVARERVKVVDREEMTRISREGVLLGAGG
+>KBS0714_MOLHKGIG_01771
+-----MTVRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAVLD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAIYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDEHEKSLGAQATEAGPVARERVKVVDREEMTRISRDGASVPTA-
+>KD337_NAFOICDF_01032
+-----MTERPDRPLRIAVVGAGPAGVYTADILTKEERDFQVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFIGNVDVGTTVSLEDLRRLYDVVVFTTGAVRDAALD
+VPGVELEGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+VTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRTEQASRRLHLHFLQAPEEFLDADGDGRVDGL
+RMRRMELDGQGGITPTDETVDYDVQAVYRAVGYFGSPVPGVEFDDVRGVIPNAEGRVLDA
+AGHPVPGLYTSGWIKRGPVGLIGSTKGDSLETIKHLIEDEPGLYTAEDPSEQAVLDLLAE
+RGVDYTTWEGWHALDAHEKALGAEATQAGPVERERVKVVDRAEMTRISRAGTGLA---
+>KD337_NAFOICDF_01844
+MTPTPSSSRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVNALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFAAWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEQAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEQFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAVYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETITHLIEDEPGLWRAQEPSEESVIELLES
+REVPYTTWAGWHALDDHEKSLGAQATEAGPVARERVKVVDREEMTRISRKSILLGAGG
+>SA211_MHAAABBN_00706
+MTLTPSSSRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFAAWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDA
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTDETVDYPVQAIYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDEHEKSLGAQATEAGPVARERVKVVDREEMTRISRESVLLGAGG
+>SA211_MHAAABBN_01478
+-----MTVRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAVLD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAIYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDEHEKSLGAQATEAGPVARERVKVVDREEMTRISRDGASVPTA-
+>TT9_LFPAFLNI_00935
+MTLTPSSSRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVNALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTDETVDYPVQAIYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDEHEKSLGAQATEAGPVARERVKVVDREEMTRISRESVLLGAEG
+>TT9_LFPAFLNI_01700
+-----MTARPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFAAWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAVYRAVGYFGSPVEGVEFDEVRGVIPNAQGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDDHEKSLGAQATEAGPVARERVKVVDREEMTRISRDGASVPTA-
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000016.fa

@@ -0,0 +1,80 @@
+>AS2_ACLBLIBL_01238
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIAREVELDDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPGEVKKGIEVAVAAVEQRLQENARPVEGK-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGFLSPYMVTDAERQEAVLEDPYVLINSGKISNVQELLPVLEKVLQ
+ASRPLFVIAEDIEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMLQDIAVLTGAQVVSPDLGMKLEQADLDVLGSARR
+ITVTKDETTIVDGGGSAEDVEARVAQIKAESAATDSDWDREKLQERLAKLAGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALSVLDTDADVQALTGDAASGVDIVRKALKQPLRWIAQNAGEDGYVVVSKVAELEPNHGFN
+AKTGVYGDLIADGVIDPVKVTRSALANAASIAALVLTTETLVADKPEDEDE------------HQH
+>AS2_ACLBLIBL_02606
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPLSLKRGIEKAVDAVTAELLSASREIETKEQIAATASISAADKQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISSVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENATLDLLGTARK
+VVITKDETTIVEGAGDAEQIAGRVAQIRAEIENTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFGGLTLEGDEATGANIVKVAIEAPLKQIAFNAGMEPGVVADKVKTLQDGHGLN
+AATGEYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>KBS0714_MOLHKGIG_00355
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPLSLKRGIEKAVEAVTSELLSASREIETKDQIAATASISAADKQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISSVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENATLDLLGSARK
+VVITKDETTIVEGGGDAEQIAGRVAQIRSEIENTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFGGLQLEGDEATGANIVKVAIEAPLKQIAFNAGLEPGVVADKVKTLDDGHGLN
+AATGEYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>KBS0714_MOLHKGIG_01656
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIAREVELEDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPGEVKRGIEVAVAAVEQRLQENARPVEGK-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGFLSPYMVTDAERQEAVLEDAYVLINSGKISNVQELLPLLEKVVQ
+ANKPLFVIAEDIEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMMQDIAILTGAQVVSPDLGMKLEQADLDVLGSARR
+ITVTKDETTIVDGGGAPEDVEARIAQIKAEAAATDSDWDREKLQERLAKLSGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALTVLDTDADVQALTGDAAVGVDIVRKALKQPLRWIAQNAGEDGYVVVSKVAELEPNHGFN
+AKTGVYGDLIADGVIDPVKVTRSALANATSIAALVLTTETLVADKPADEDEA----------GHQH
+>KD337_NAFOICDF_01149
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIARDVELEDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPNEVKKGIETAVAAVEKRLQENARPVEGK-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGYLSPYMVTDAERQEAVLEDAYVLINSGKISNVQELLPLLEKVLQ
+ANKPLFVIAEDVEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMMQDIAILTGATVVSPDLGMKLEQADLDVLGSARR
+VTVTKDATTIVDGGGEAADVEARVSQIKAEVAATDSDWDREKLQERLAKLAGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALSVLDEDAEVTALTGDAATGVEIVRKALKEPLRWIAQNAGEDGYVVVSKVAEMKPNEGFN
+AKTGVYGDLIADGVIDPVKVTRSALANAASIAALVLTTETLVADKVEDEDE------------HQH
+>KD337_NAFOICDF_02465
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPISLKRGIEKAVEAVTSELLSAAREIETKDQIAATASISAADAQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISTVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENASLDLLGTARK
+VVITKDETTIVEGAGDADQIAGRVAQIRSEIANTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFEGLQLEGDEATGANIVKVAIEAPLKQIAFNAGLEPGVVADKVKSLESGHGLN
+AATGEYVDLMAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>SA211_MHAAABBN_00071
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPCGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPLSLKRGIEKAVEAVTSELLSASREIETKDQIAATASISAADKQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISSVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENATLDLLGTARK
+VVVTKDETTIVEGGGDAEQIAGRVAQIRSEIENTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFGGLQLEGDEATGANIVKVAIEAPLKQIAFNAGLEPGVVADKVKTLDDGHGLN
+AATGEYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>SA211_MHAAABBN_01361
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIAREVELEDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPGEVKKGIEVAVAAVERRLQENARPVEGQ-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGFLSPYMVTDAERQEAVLEDAYVLINSGKISNVQELLPLLEKVLQ
+ANKPLFVIAEDIEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMMQDIAILTGAQVVSPDLGMKLEQADLDVLGSARR
+ITVTKDETTIVDGGGAAEDVEARVAQIKAESAATDSDWDREKLQERLAKLSGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALTALDTDADVQALTGDAAVGVDIVRKALKQPLRWIAQNAGEDGYVVVSKVAELEPNHGFN
+AKTGVYGDLIADGVIDPVKVTRSALANATSIAALVLTTETLVADKPADEDEA----------GHQH
+>TT9_LFPAFLNI_00362
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPLSLKRGIEKAVEAVTSELLSASREIETKDQIAATASISAADKQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISSVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENATLDLLGTARK
+VVVTKDETTIVEGGGDAEQIAGRVAQIRSEIENTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFGGLQLEGDEATGANIVKVAIEAPLKQIAFNAGLEPGVVADKVKTLDDGHGLN
+AATGEYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>TT9_LFPAFLNI_01586
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIAREVELEDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPGEVKKGIEVAVAAVERRLQENARPVEGQ-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGFLSPYMVTDAERQEAVLEDAYVLINSGKISNVQELLPLLEKVLQ
+ANKPLFVIAEDVEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMMQDIAILTGAQVVSPDLGMKLEQADLDVLGSARR
+ITVTKDETTIVDGGGAAEDVEARVAQIKAEAAATDSDWDREKLQERLAKLSGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALTVLDTDADVQALTGDAAVGVDIVRKALKQPLRWIAQNAGEDGYVVVSKVAELEPNHGFN
+AKTGVYGDLIADGVIDPVKVTRSALANAASIAALVLTTETLVADKPADEDEA----------GHQH

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000018.fa

@@ -0,0 +1,28 @@
+>AS2_ACLBLIBL_02275
+MPAPYPQEFRDEVVRVAQNREPGTQLKQIAKDFGISFSCLTNWMRQAEIEAGNKPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>AS2_ACLBLIBL_02497
+MPAPYPQEFRDDVVRVAQNREPGTHLKQIAKDFGISFSCLTNWMRQAEIEAGNKPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>AS2_ACLBLIBL_02616
+MPAPYPQEFRDDVVRVAQNREPGTHLKQIAKDFGISFSCLTNWMRQAEIEAGNKPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>AS2_ACLBLIBL_02634
+MPAPYPQEFRDDVVRVAQNREPGTQLKQIAKDFGISFSCLTNWMRQAEIEAGNKPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>KD337_NAFOICDF_01886
+MSKPYPKEFRDDVVRIARNREPGVELSQIAKDFGIHFTTLYAWMKKADIEDGDRPGTTEA
+QYAELREAKRRIRTLEQEVEVLRRAAAYLSQAHLPGK-----
+>SA211_MHAAABBN_00342
+MPAPYPQEFRDDVVRVARSREEGVTLAQIAKDFGTHEMTLSKWMRQADVEDGAKPGTTKA
+ESAENRELKKRIRLLEQENEVLRRAAAYLSQANLPGKGSTRS
+>SA211_MHAAABBN_01766
+MPAPYPKEFRDDVVRVAQNREPGTHLKDIAKDFGISESCLTNWIRQADIEAGNIPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>TT9_LFPAFLNI_00899
+MSKPYPKEFRDDVVRVARNRGPGVELSQIAKDSGIHVTTLYAWMKKADIEDGDRPGTTEA
+QSAELREAKRRIRTLEQEVEVLRRAAAYLSQAHPPGK-----
+>TT9_LFPAFLNI_01543
+MPGPCPREFREDVVAVARSRESGVTIKQIATDFGVSEATLQNWLRQADVEDGNRPGQTAA
+DAAEARELKKRIRLLEQENEVLRRAAAYLSQANLRLGGSPK-
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000022.fa

@@ -0,0 +1,57 @@
+>AS2_ACLBLIBL_00513
+MANDDANTTTTDQLTLQDPVKRYPVISPPEQSLPGTGLDAEMTPKADLGEHSYRGTGRLT
+GRKALITGGDSGIGAATAIAFAREGADVVITYLPEEEKDARNVLAVLEKEGRTAVGIAGD
+LRDRQFCQDVVA----QAVE--AMGGLDVLVNNGGKQVAQKEFEAIDDEQLEATFDVNIL
+AQFRLVRAALPHLKP---GASIINTTSVVSYMPPETLIDYASTKAAINNFTKGLGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQPTEELPDFGQSTPLGRAGQPTELAPAFVFLASAESSY
+VVGATIAVTGGMPTP---------
+>KBS0714_MOLHKGIG_02238
+MAHDDANTTTTDQLTLQDPTKRYPVISPPEQSLPGTGLDAEMTPKVDLGEKSYRGTGRLE
+GRKALITGGDSGIGAATAIAFAREGADVVITYLPEEEKDAQHVLEVLQAEGRTAVGIPGD
+LRDKTFCVDLVA----QAVE--KLGGLDVLVNNGGKQVAQDSIEDIDDEQLEATFDINIL
+AQFRLVKAALPHLKP---GSTIINTTSVVAYMAPEQLVDYSATKAAINTFTKALGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQKPEALPEFGQSTPLGRAGQPTELAPAYVFLASPESSY
+VVGATIPVTGGMPTP---------
+>KD337_NAFOICDF_00440
+MTDVSTSTDTAVG-------------------------DSDTRPAAART-DAPAATVLLA
+GRAALVTGGTLGIGSGIAASLRDAGARVAVTGLTEQECAAAR------EAGFPAYVL--D
+VRDRAACAEVVG----AVVE--EFGGLDVLASNAGI-YPQARIADMTDEDIDLIFDVNVK
+GTIHAVQAALPALVASGRGRVVITSSITGNHTGYPAWSHYGATKAAQLGFVRSAAIELAR
+QGVTVNAVLPGNIITPGLEEMGQ--EYLDSMARSVPAGHLGEPADIGATVAFLASDGARY
+ITGQGIVVDGGQILPETPEALEGL
+>KD337_NAFOICDF_00454
+MANDDTNTTTTDQLTLQDPTKRYPVISPPEQSLPGTGLDAEMTPKADLGEKSYRGTGRLE
+GRKALITGGDSGIGAATAIAFAREGADVVLTYLPEEEKDAQHVKEVIEAEGRKAVTVSGD
+LRDKQFCKDLVE----RAVQ--ELGGLDILVNNGGKQVAQEEFEQIDDEQLEATFDINIL
+AQFRLVRAALPHLKP---GSTIINTTSVVAYMAPEQLVDYSSTKAAINTFTKALGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQKPEALPEFGQSTPLGRAGQPTELAPAYVFLASPESSY
+VVGATIPVTGGMPTP---------
+>KD337_NAFOICDF_00650
+M-----------------------------------------------------------
+-----------GI------------------HYARDSTAAEAVVERVNEAGASGVLIRAD
+LAEGAAGAAHLATRWRDEVRRHDARGTDVLVSNAGINGAQ-SLSELDEGTVARVVNVNLV
+APLMLVHHLSDHIND---HGRVIGISSGFARIAAPTHVAYTASKAGLEAAFRAIAAELAE
+RDITVNTVRPGVIDTDINADWINEPGARDAVAAAAALRRVGQPDDVADIVAFLASHSSRW
+MTGQSLDATGGTQL----------
+>KD337_NAFOICDF_01865
+MSTHD----------LPDPLTQFPRFAPERQTQEEPGLSARMDPEPDCGEDTYVGIGRLK
+GRRALVTGGDSGIGRAVALAYAREGADVVFTHLPEEAEDAARTTELLDAEGVRHVAREVD
+LRDEAATRALVR----DAVK--FLGGLDLIANVAGEQRYVDDLAELDPRQVRDTFEINVF
+ALIWIVQEALPHLPA---GAAIVNTASTQATTPLPGLVDYAGTKGAIVSITKALAQQLTP
+RGIRVNAVVPGAIWTPIQVSLGRAPEQVDVLGQDAPLGRPGQPAEMAPAYVFLASTEASY
+VSGEVLGATGGTLY----------
+>SA211_MHAAABBN_01940
+MAHDDANTTTTDQLTLQDPTKRYPVISPPEETLPGTGLDAEMTPKADLGEKSYRGTGRLE
+GRKALITGGDSGIGAATAIAFAREGADVVITYLPEEEKDAQHVLEVLQAEGRTAVGIPGD
+LRDKTFCVDLVA----QAVE--KLGGLDVLVNNAGKQVAQDSIEDIDDEQLEATFDVNIL
+AQFRLVKAALPHLKP---GSTIINTTSVVTYMAPPQLVDYASTKAAINTFTKALGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQKSEDLPEFGQSTPLGRAGQPTELAPAYVFLASPESSY
+VVGATIPVTGGMPTP---------
+>TT9_LFPAFLNI_02170
+MAHDDANTTTTDQLTLQDPTKRYPVISPPEETLPGTGLDAEMTPKADLGEKSYRGTGRLE
+GRKALITGGDSGIGAATAIAFAREGADVVITYLPEEEKDAQHVLEVLQAEGRTAAGIPGD
+LRDKTFCADLVA----QAVE--KLGGLDVLVNNGGKQVAQDSIEDIDDEQLEATFDINIL
+AQFRLVKAALPHLKP---GSTIINTTSVVAYMAPEQLVDYSATKAAINTFTKALGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQKPEALPEFGQSTPLGRAGQPTELAPAYVFLASPESSY
+VVGATIPVTGGMPTP---------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000024.fa

@@ -0,0 +1,73 @@
+>AS2_ACLBLIBL_02374
+MPSASPSSPAARRARAHPVARRDVVRARWAATLAFLTNGGMLGALIPHYPQAKAAFGLDA
+DAFGLLVVALAAGAAAAGSLPAPVLRRWGSRRVMLAGTVVMAVVVVAAGLVVDLSAPAQG
+R------PWAGAVWLFAALLGVAGILDAVVDTAQNAQGLTVQTRLARPVLTSMHAGWSLG
+AGLGAGLGALAVGAGMPAGLHLGLNGAACVAVLVAAGRRFLPD------------DARPA
+P-----DADAPEGTAAPAPGPSP-------------------------------------
+-----------------------------RRPAR----------------PPPPRP-APP
+---------------------------PGWPC----------------------------
+-----------------------------SP---
+>AS2_ACLBLIBL_02375
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------MAGFGVEEFGNAWTALFLQSERGLDV
+AAAGLGASTLLLAQFVGRLVGDRVLHRLGRRRTLAGSLAVVVAALVLVLTAP-----AAP
+AVFAGLALAGLGCAVVVPTAYALGDEVPGLPPRTGLAVVSWLMRVAGIGLSPLVGLLATG
+LPLPAALAVFPALAVLGLVGTGVVGRRRRRP---
+>KBS0714_MOLHKGIG_00570
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------------------MHAGWSLG
+AAAGAGLGAAVITVGGPAALHLGLNGAVCVAVLLGVRRLFLAEAPVDSASARGAADQSPA
+PS-ETSAPPAPAAQALP--RRAAVAVLVPAVVIAMAGFGVEEFGNAWATLFLITERGLDP
+AAAVLGASTLLGAQFVGRLAGDRTLAVLGRRGALTAGLGAVVVGLGLAL-APLPGPVAVP
+AAFAGLALAGLGCAVVVPVAYALGDEAPGLRPQTGLAVTSWCMRLAGVGLSPAVGALAGA
+VGLAPALTVFLGLAAVGTVLAARLPA---AP---
+>KBS0714_MOLHKGIG_00571
+MSEAPPHLPTADDGVAR------ARRARWAVTAAFATNGALLGALIPHYPEAKAAFGLDP
+AAFGLLVIALAVGGTLAGPLPAPILRRFGARRVMLAGSVAIALLTTAAGLVLDIAGAGAG
+AGHGAGTAAAWLLWVFAGLVLASGVLDAVVDTAQNAQGLQV-------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------
+>KD337_NAFOICDF_02254
+MTSAPADTPR--------IDRRAATRSRWAATAAFFTNGALAAAMIPHYPQAKAAFGLDP
+AGFGLLVTVMTLGAACAGPAGAPILRRAGSRATVLWGSLAIAVVLTGAGLALDLGARSDA
+AG-----PWLGA---YAAAVFASGLCDAVVDTAQNAQGLRAQHALGRPVLTSMHAGWSLG
+AAVGAALGAAAVGAGVPAGLHLGLNGAACVLLLALTLPRFLPDTP----------DHAPA
+PALLTADDPGPESEATPASHRHPWLLLAPIVVISMAGFSVEEFGNSWTSLFLQAERGLDP
+ATAGLGASTLLGAQFLGRLTGDRVLAALGRTRALTGGLAVVLAGLTVTLLVP-----TPA
+AMFTGLALAGLGSAVVVPTAFALADEVPGLPAQTGLAVVSWLMRLAGLGLSPLVGLLAGV
+LPLTAALGAFVVLAALGTVLALTLRAPRLAPDFR
+>SA211_MHAAABBN_00294
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------------------MHAGWSLG
+AAAGAGLGAAVITVGGPAALHLGLNGAVCVAVLLGVRRLFLAEAPVDSASARGAADQSPA
+PS-ETSTPPAPAAQALP--RRAAVAVLVPAVVIAMAGFGVEEFGNAWATLFLITERGLDP
+AAAVLGASTLLGAQFVGRLAGDRTLAALGRRGALTAGLGAVVVGLGLAL-APLPEPVAVP
+AAFAGLALAGLGCAVVVPVAYALGDEAPGLRPQTGLAVTSWCMRLAGVGLSPAVGALAGA
+VGLAPALTVFLGLAAVGAVLAARLPA---AP---
+>SA211_MHAAABBN_00295
+MSEAPPHLPTADDGVAR------ARRARWAVTAAFATNGALLGALIPHYPEAKAAFGLDP
+AAFGLLVIALAVGGTLAGPLPAPILRRFGARRVMLAGSVAIALLTTAAGLVLDIAGAGAG
+AGHGAGTAAAWPLWVFAGLVVASGVLDAVVDTAQNAQGLQV-------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------
+>TT9_LFPAFLNI_00572
+MSEAPPHLPTADDGFAR------ARRARWAVTAAFATNGALLGALIPHYPEAKAAFGLDP
+AAFGLLVIALAVGGTLAGPLPAPILRRFGARRVMLAGSVAIALLTTAAGLVLDIAGAGAG
+AGHGAGTAAAWPLWVFAGLVLASGVLDAVVDTAQNAQGLQVQTRLARPVLTTMHAGWSLG
+AAAGAGLGAAVITVGGPAALHLGLNGAVCVAVLLGVRRLFLAEAPTDSASARDASDQSPA
+PS-ETSTPPAPAAQALP--RRAAVAALLPAVVIAMAGFGVEEFGNAWATLFLITERGLDP
+AAAVLGASTLLGAQFVGRLAGDRTLAALGRRGALTAGLGAVVVGLGLAL-APLPGPVAVP
+AAFVGLALAGLGCAVVVPVAYALGDEAPGLRPQTGLAVTSWCMRLAGVGLSPAVGALAGA
+VGLAPALTVFLGLAAVGAVLAARLPA---AP---
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000025.fa

@@ -0,0 +1,56 @@
+>AS2_ACLBLIBL_00109
+MPESTAVRSRLLSGAPRRARRSSSPDEES---LGPAGRWRAFWAAGPLSRVYLVAGSVLLLVSAASDLGLIGGGAFATAP
+LD-----VAVIVSTTAAFLAQWWR----STVGFALLVPAGAATIAGGTEALVTLVTAAMLAAVTV---------TARSWA
+FVVAAATLALAWGVVRPV--------ASGRPS-EAWFVLALMTAALGVGLFIRESVARRERDRRRILEA------EERAR
+LAAER---ERRSLARDLHDVVAHNLTIISMQARTAQYL--GTPEAAQSVLAVVGDSAKDALVDLRRMLAILQEDGIVDPA
+GEPGAAGGADGATSADLALTAGRMAAELRSLGMSVEQDLR-FDPEAVPMSVRSALHRVLQEATTNAAKHAGTGAEVRIMV
+AEQGRDVVLEVENS--------VAAP-----QRSMRWNSSGVGLQSMRDRVATFGGTLEAGP-GGRGWLVRAAIPRAPEG
+A---------------------------------
+>AS2_ACLBLIBL_00590
+M--------------------------------------------AGVELAYL------------SDFISEMPWRHGVGW
+-------VALGAAV-LALPLAWRRRFPVTVMLTISVLYIALASWVG--IELYASQVVLFLGFYSVGAWCPDRRRALWSRT
+AVAAAMAVWLGWVTVDGFTDPEVGERGVNAYA-AVAAIQFLVNLAYFSGAWIFGDRAWREAIRRQRLEAAHAEIRAQQAR
+IAAQEVSLERLRIARELHDVVAHHVTAMGVQAGAARLTLDRDPEAAAGHLRGIESSAREAVAELKTMVHTLR-DADAAPD
+SLPRLADLED------LVAQAVRLGTDARLTRVGPEPRLG--------APAELALYRVAQEGLTNARRHAGPRAAVEVRL
+RTEPERVELEVSDDGRARPDAEAGSERSPGGAGGAVPAGTGLGLVGMAERMASVGGTVRCGPKPGGGWLVRASVPTLPEP
+GEDAAWDAPDEPAPAPDETVQPETMPDPTTEATR
+>KBS0714_MOLHKGIG_00260
+MPDSSPSTPSVRSGAPSRARRSSAWRQAR------SLRWRAFWAAAPLSRVYLAFGSAFLLASTASDIGLFGPGHGAIPV
+LD-----GIAIASATSAFLAQWWR----STVGFALLLPGAVATVVGGSEVLFAVVAPVVLGAVAA---------TARSWG
+FVVTAAVLALTWGVAQPF--------AVGQSN-ATWFILLLMSMGLGGGLFIRESLARRERDRRRVFEA------EERAR
+LAAEA---ERRSLARDLHDVVAHNLTIISMQARTARYL--GAPEAAQGVLDVVGDSAKDALRDLRRMLSILQEDGIVDPS
+GEPGAAGGADGATSADPVLSVAQLAEELRSLGMTVETDVR-CDQNAMPISVRSTLHRVLQEATTNVAKHAGEGARVCIEL
+RDAGPDVVLEVENT--------VTER-----SGPPQWNSSGVGLNSMRDRVATFGGTIEAGP-GGWGWRVRAVLPRSV--
+----------------------------------
+>KD337_NAFOICDF_00077
+M---------------SRARLGSTLRSLLDPVSPPAGGRVRFWDAAPANRVYLVVGSVFSVASTTSDVMIELGRGGGDTR
+AD-----IAFMVLACLAFLAQWWR----TTVAYAVVLLLMAASLVGGDAVSVVLVLPFVLGTVVA---------TAQSGR
+YLLAAGATALAWVVAVSLV-------GSGKVDGVAWLTLLLVVVGLGVGASIRAAKLQRVQDGRRIAEA------ERLAR
+EAAER---ERRILARDLHDIVAHNLTIIAMQANAAQYL--GTPEAAQQVVRVVGESARDALTDLRRMLSILQEDGVVEPA
+PTPGTPETDDAATVAQLGPGAERLAEELRLAGVDAAVRVE-LGEVGLNLGVRAALYRVMQESVTNVAKHAGPGQACEISI
+EARGGEVVLEVVNT--------LPED----GPRSVVGNSSRVGLTSMRDRIEAFGGRLEVGPCGGDRWRVRAAVPR-PEA
+----------------------------------
+>KD337_NAFOICDF_00524
+M----------------------------------------------------VGG--LLLVWETADLALGAAGRPGGGL
+LDSADALFSLGTGVTLVLALAGAR----ALMGCYTLL--VLSALASGFYALPVVTVGLAMGFAAL----------YLSRT
+PLVVFSCTLLATTVLTAAL-------RPDHLD-VLPLMLVPALAGTAVGLLLRRESVSLERARRRNLEL------VEARD
+RATAD---IRRSLARDLHDVVAQDLAVLAMQTQAIRVA--PDRAAQQRMADAVADVARQAHANLRGLLQVLYAGTDVDAR
+RGTGTPDALDTALVTSSAQAARDAAARLRAHGFDVDLQVQEQDGVRAPRHVDATVHRIAHEAVTNVVKHAPAGGACQVLF
+TLSPGQVRLRVLSE--------LSPAQHPGRPRDAPQPDGSFGVLNIRERAGLLGGRADVGPREG-RWHVDVRIPFGVPA
+----------------------------------
+>SA211_MHAAABBN_02273
+MPDSSPSTPSVRSGAPSRARRSSAWRQAR------SLRWRAFWAAAPLSRVYLAFGSAFLLASTASDLGLIGPGLGAIPV
+LD-----GIAIASATSAFLAQWWR----STVGFALLLPGAVATAAGGSEVLFAVVAPVVLGAVAA---------TARSWW
+FVVTAAVLALTWGVAQPF--------AVGQSN-ATWFILLLMSMGLGGGLFIRESLARRERDRRRVFEA------EERAR
+LAAEA---ERRSLARDLHDVVAHNLTIISMQARTARYL--GAPEAAQGVLDVVGDSAKDALRDLRRMLSILQEDGIVDPS
+GEPGAAGGADGATSADPVLSVAQLAEELRSLGMTVETDVR-CDQNAMPISVRSTLHRVLQEATTNVAKHAGEGARVCIEL
+RDAGPDVVLEVENT--------VTER-----SGPPQWNSSGVGLNSMRDRVATFGGTIEAGP-GGWGWRVRAVLPRSV--
+----------------------------------
+>TT9_LFPAFLNI_00258
+MPDSSPSTPSVRSGAPSRARRSSAWRQAR------SLRWRAFWAAAPLSRVYLAFGSAFLLASTASDIGLFGPGHGVIPV
+LD-----GIAIASVTSAFLAQWWR----STVGFALLLPGAVATVVGGSEVLFAVVAPVVLGAVAA---------TARSWG
+FVVTAAVLALTWGVAQPF--------AVGQSN-ATWFILLLMSMGLGGGLFIRESLARRERDRRRVFEA------EERAR
+LAAEA---ERRSLARDLHDVVAHNLTIISMQARTARYL--GAPEAAQGVLDVVGDSAKDALRDLRRMLSILQEDGIVDPS
+GEPGAAGGADGATSADPVLSVAQLAEELRSLGMTVETDVR-CDQNAMPISVRSTLHRVLQEATTNVAKHAGEGARVCIEL
+RDAGPDVVLEVENT--------VTER-----SGPPQWNSSGVGLNSMRDRVATFGGTIEAGP-GGWGWRVRAVLPRSV--
+----------------------------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000030.fa

@@ -0,0 +1,22 @@
+>AS2_ACLBLIBL_00389
+MPAAYPREFRQDVVAIARKGQMPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGVTKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLVQSPK
+>AS2_ACLBLIBL_00393
+MPAAYHREFRQDVIAIARKGQMPIAQVAKDFGIAESRLRRWLAQDDVEAGIRPGVTKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLVQSPK
+>AS2_ACLBLIBL_00410
+MPAAYPREFRQDVVAIARKGQMPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGVTKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+>KBS0714_MOLHKGIG_00627
+MPAAYPREFRQDVVAIARKGQIPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGITKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+>KD337_NAFOICDF_02189
+MPAAYPREFRQDVVAIARNGQMPIAQVAKDLGITASCLRRWLAQDDVEAGIRPGLTKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+>SA211_MHAAABBN_00372
+MPAAYPREFRQDVVAIARKGQMPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGITKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+>TT9_LFPAFLNI_00604
+MPAAYPREFRQDVVAIARKGQMPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGITKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000033.fa

@@ -0,0 +1,56 @@
+>AS2_ACLBLIBL_00403
+MT-----------GRRRYQGLAARFFLAQLLVVGASVLAAV-------VVASL---------------------------
+-----------------------AGPPLFREHLEPA--------------------------------------------
+GAGHDAAQML------HVEQAYRDANFWTLGVALATALICCLALTWHVARRIQSPINALTQAAKAMAGGRYDTRVPAMGA
+GTEVEELAGSFNTMAAR-----LQRTEDTRRRMLSDLAHELRTPVSVLTVYHEALQDGVSHWD----EPTGELMGEQLAR
+LTRLVEDINDVSRAEEGRIELDRSPQGV--SGLLHAATEA--HKEAYATKGVALTMDAD-PGLAVDVDRQRMGQVLGNLL
+TN---ALRHTPAGG-----------------RVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDHG-
+------GSGVGLAISRALIQAHGGTLSATSTT--AGATFTIDLPTKQPPDQPTYRRTRSSTVNTGAP---PLA
+>AS2_ACLBLIBL_01253
+M-------------RTRLSTLLALVLVLSLAVSGITAYAVLRITVNDRIEASLQRAVEQVALLSETGVDPETGEPPDSAA
+AFIRLAMLRVLPHDNEGILG---LAPDRAELAASDAVELRLEEDPELVAWALARVGDQEARAETVTTASATYRAVVVPVT
+GWGQDDAGALLLAVDVDAEVGRLDRTFLGFAGGALLTTVFALAVGVPLLRRVFAPLESLQEAVGEVTEHDLDRRVEVIGH
+-DDVAALGHSFNAMLER-----LEDSFASQRRLLDDAGHELRTPVTIVQGHLEVMDPDDPADV----RETTRLTLDELDR
+MSRLVDDLLVLAKAQHPDF-LRPAPVDV--AELTRGVL-----ARASGFDGHVWELDGV-AEATVSLDAQRITQAWLQLA
+AN---AVRYSEPGS-----------------VVRLGSAVEGDTLRLWVQDHGVGVRPEDRAQIFERFGRGAHGTRAD---
+------GSGLGLAIVSSIAAAHGGEVSLDSVPG-LGSVFRIELPLSTPSRPAG----------SLTPGKDP-A
+>AS2_ACLBLIBL_01330
+MTRSKPTGRLSASGRARVVAWILGVSALGMVLMLVSIVLTLRWVERDAIETSLTQESDEVAVFAQNGRDPETGEPFATPE
+RFVGHYLERQRVEPTELMFGGTAATPVIAQIHGDAA------APVELLAPATRQ-AMEQPRSRGTLVDPTHGRISYANLT
+VTTPADTGHVVVAVFHERYEQRVMTQTLLLSALALAALAATAAAAWLVSSRILGHTVEFHRAVDASLKDRGLRRLPENGS
+-EEYAGLARRANDLVRR-----ADRRLEEERRFAEDVTFALRTPLTVIEGGL-----RNPGGDEQERRTSYRHIGAEATR
+VRGLLEDLVILSRLQQDDVVLERTPVDV--GVLVATAAQAWRERHPDAADEPRLDVEAPAEGLTAVTDRARLVQVLEELL
+DNARHAVRFAPGSDLPRDLTAVTPLERTLSVRVREEERDGEPWAVVEVADRGRGIPEEDREEVFERLANASNDPYP----
+------GNGLGLPVAALLSTALDGELTLEPGPGAAGTVARLAVPLTADQDGEDA-------------------
+>KBS0714_MOLHKGIG_00631
+MT-----------GRRRYQGLAARFFLAQLLVVGASVLAAV-------VVASL---------------------------
+-----------------------AGPPLFHEHLEQA--------------------------------------------
+GAGHDAAQML------HVEQAYRDANFWTLGVALATALICCLALTWHVARRIQSPINALTQAAKAMAGGRYDTRVPAMGA
+GTEVEELAGSFNTMAAR-----LQRTEDTRRRMLSDLAHELRTPVSVLTVYHEALQDGVSHWD----EPTGELMGEQLAR
+LTRLVEDINDVSRAEEGRIELDRSPQGV--SGLLHAATEA--HKEAYATKGVALTMDAD-PGLAVDVDRQRMGQVLGNLL
+TN---ALRHTPAGG-----------------RVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDHG-
+------GSGVGLAISRALIQTHGGTLSATSTT--AGATFTIDLPTKQPPTSPP----------TGAPVYPP--
+>KD337_NAFOICDF_00451
+M-------------------------------------------------------------------------------
+------------SPTPALRGRPAPGP-----------------DAALVARAARRIGLRTALACAALVLGGAG--VFFGY-
+-------------------------------------------LWWQIAHPGVDPRDA--DATVTVQLDLVDLATAAILA
+GAAAVLITGFASLWFSRSAVQPLADALRRQREFVSNASHELRTPLTVLSARTQVLQARVPAGDPL--EPLADELRRDTDV
+MAGVVEDMLSTAR-------LDSAPEGMCDAGEVAAAACA--DLSLVGAEERGVRLRADLPSLPVALPEAALRRMLAALL
+DN---ALGFAPPGT-----------------EVTVSGERVRGVVELRVADRGAGIQGVEPDHVFDRFARGRPAAVPGSGP
+GAVPRSSHGIGLALVRETAHRYRGEVRVESTGP-EGTVMLLTLPAAQEAR-----------------------
+>KD337_NAFOICDF_02198
+MT-----------SRRRYQGLAARFFLAQLLVVGASVLAAV-------VVASL---------------------------
+-----------------------AGPPLFHEHLEQA--------------------------------------------
+GAGHDAAQML------HVEQAYRDANFWTLGVALATALICCLALTWHVARRIQSPINALTQAAKAMAGGRYDTRVPAMGA
+GTEVEELAGSFNTMAAR-----LQRTEDTRRRMLSDLAHELRTPVSVLTVYHEALQDGVSHWD----EPTGELMGGQLAR
+LTRLVEDINDVSRAEEGRIELDRSPQGV--SGLLHAATEA--HKEAYATKGVALTMDAD-PGLAVDVDRQRMGQVLDNLL
+TN---ALRHTPAGG-----------------RVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDHG-
+------GSGVGLAISRALIQTHGGTLSVTSTT--AGATFTIDLPTKQPPDQPTYRRTRLSTVNTGAP---PLE
+>TT9_LFPAFLNI_00600
+MT-----------GRRRYQGLAARFFLAQLLVVGASVLAAV-------VVASL---------------------------
+-----------------------AGPPLFHEHLEQA--------------------------------------------
+GAGHDAAQML------HVEQAYRDANFWTLGVALATALICCLALTWHVARRIQSPINALTQAAKAMAGGRYDTRVPAMGA
+GTEVEELAGSFNTMAAR-----LQRTEDTRRRMLSDLAHELRTPVSVLTVYHEALQDGVSHWD----EPTGELMGEQLAR
+LTRLVEDINDVSRAEEGRIELDRSPQGV--SGLLHAATEA--HKEAYATKGVALTMDAD-PGLAVDVDRQRMGQVLGNLL
+TN---ALRHTPAGG-----------------RVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDHG-
+------GSGVGLAISRALIQTHGGTLSATSTT--AGATFTIDLPTKQPPTSPP----------TGAPVYPP--

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000034.fa

@@ -0,0 +1,22 @@
+>AS2_ACLBLIBL_00412
+MPKEQTAGKPTTRRYSPEE-AAAVRMVRTMRAELGTEHGTVQRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEAQRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>KBS0714_MOLHKGIG_01397
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRAELGTEHGTVNRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEAQRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>KD337_NAFOICDF_00325
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRAELGTEHGTVQRVATQLGYGVESVRMWVK
+HADIDDGVTSGVSSAEAQRVRELEQEVRKLRRANEVLKRAASFFGAELDRHYRK
+>KD337_NAFOICDF_00648
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRVELGTEHGTVQRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEARRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>KD337_NAFOICDF_02216
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRVELGTEHGTVQRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEARRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>SA211_MHAAABBN_01130
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRAELGTEHGTVNRVATQLGYGVESVRMWVK
+QADIDDGVTSDVSSAEAQRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>TT9_LFPAFLNI_01347
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRAELGTEHGTVNRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEARRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000037.fa

@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00589
+MT--------TRVLLVDDQPLIRLGFAAILQSQ---DDIEVVGEAGDGAECLERAAALDP
+DVICMDVQMPRMDGIEATRALAEAG-TRAAVLILTTFDRDDFLFETLEAGASGFLLKSAE
+AEHLIDAVRVLGRGDALLDPQVTRRVLRRMASAAPEGVDGPAGVGQPRDDDGAAPGQAEA
+SDAVGKAGLTGREAEILTLMARGLSNGEIAGQLFVGESTVKTHVSNVLMKLGARDRVHAV
+IWAFEHGVAG------------
+>AS2_ACLBLIBL_00598
+MS-TDAENAPVRVALVDDQALIRSGLAMLVDSQ---PDLTVVAEAGSGREAVASVSVAGA
+DVVLMDVRMPEMDGIEATRTLLQRP-DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAP
+PEELLAAIRTVHRGDAVIAPSTTRRLMAHMA---------------PRLRSDHARTAECE
+HEQAAVESLTPREREVLVLMAQGSANLEIAGELVLSEATVKTHVGRVLAKLGARDRVQAV
+LIAHRAGLVQ-----------F
+>AS2_ACLBLIBL_02580
+M--------------VLPDAGVRGGVRVRTSRTGVVGDIRLVEGAVSG------------
+DLDSADLLLGGVNSLGETRQVARQGRDVPPFLLVAEATIVEELSGIDASGAAAVLAYPLD
+TVELAS----VAHGIAGSGPFLSPRL--------------------PQLSVEPLG-----
+------EGLSAREAEVVVALGEGLSDAEIAQALCVSVKTVHTHVLNLRRKLGARNRAHAV
+SLARSVGPLGDACSEPGLVAAL
+>KBS0714_MOLHKGIG_02160
+MS-SE-ETVPVRVALVDDQALIRSGLAMLVDSQ---PDLTVVAEAGSGREAVASVSVAGA
+DVVLMDVRMPEMDGIEATRALLRRP-DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAP
+PEELLAAIRTVHRGDAVIAPSTTRRLLTHMA---------------PRLRSDQVRSAECE
+EQQAAVASLTPREHEVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAV
+LIAHRAGLVQ-----------F
+>KD337_NAFOICDF_00520
+MSPDDAQPTPIRVALVDDQALIRSGLAMLIDSQ---PDLTVVAQASDGREAAASVAVAGA
+DVVLMDVRMPEMDGIEATRALLRRP-DAPRVVVLTTFDLDEHVMDAIEAGASGFLLKDAP
+PEELLAAIRTVHGGDAVIAPSTTRRLLAHMA---------------PRLRQDAARSAECA
+DEQAAVGSLTPREREVLVLMGQGAANPEIAAQLVLSEATVKTHVGRVLAKLSARDRVQAV
+LIAHRTGLVG-----------F
+>SA211_MHAAABBN_01873
+MS-SE-ETVPVRVALVDDQALIRSGLAMLVDSQ---PDLTVVAEAGSGREAVASVSVAGA
+DVVLMDVRMPEMDGIEATRALLRRP-DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAP
+PEELLAAIRTVHRGDAVIAPSTTRRLLTHMA---------------PRLRSDQVRSAECE
+EQQAAVASLTPREHEVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAV
+LIAHRAGLVQ-----------F
+>TT9_LFPAFLNI_02104
+MS-SE-ETAPVRVALVDDQALIRSGLAMLVDSQ---PDLTVVAEAGSGREAVASVSVAGA
+DVVLMDVRMPEMDGIEATRALLRRP-DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAP
+PEELLAAIRTVHRGDAVIAPSTTRRLLTHMA---------------PRLRSDQVRSAECE
+EQQAAVASLTPREREVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAV
+LIAHRAGLVQ-----------F
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000038.fa

@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00620
+MKTRRLTLAAVGILASAGLITGCSTADDAGPSASPSSGQSAATSSSQPASESGSASESAS
+GG-GHMDHKMDGGPAPEGIAEAASPAHPVGSEITLTADHMPGMDGATARITGAFDTTAYS
+VDYTPTTGGEPVEDHKWVVHEELQDAGDAPLQVGDTAVMEAEHMAGMKGAEATVASVTDE
+TVYMVDYTADGMTMTNHKWVVESEIQPKG
+>KBS0714_MOLHKGIG_01288
+MRKHLKTTVAAGVLGGALVFTGCSTGGDQDQGT-------PSTTSQH----EGHGSSSDS
+GG---MEHPMDGGPAPEGIETAASPTYPVGTEVTLTADHMEGMDGANAMIAGAYDTYTYA
+VDFTPSAGGEPVKDHKWVVQQEIKDAGDERLADGTEVTLEAEHMEGMKGAKATIASSTEE
+TVYMVDYESDGMTMTNHKWVVESELKPAS
+>KBS0714_MOLHKGIG_01627
+MTMRFWTRTVAVTAASLLALTGCATGGEE-----------AATSSSH----GGHAG----
+-------HAMDGGPAPEGIEPAADPAHPVGTEVTLMADHMPGMEGAAATVVGAYETTAYS
+VDYRPTTGGPEVTDHKWVVQEELEDAGAERLPDGAAVTLAADHMPGMQGAEGTVHSSTDE
+TVYMVDYESDGMRMRNHKWVVESEIASAG
+>KD337_NAFOICDF_00712
+MQRRLRTGLAAGALGVALVLAGCASGADDNQQTD------PSATEEH----QGHGGNNAE
+SGDEEMEHPMDGGPAPEGIAEASEPTYPVGTEVQLTADHMEGMEGATATISGAFDTYTYS
+VNYTPAGGGDPVTDHKWVVQEEIEDAGDARLADGTEVTLLAEHMEGMEGVKAIIASSTDE
+TVYMVDYETDGMKMTNHKWVVESEIQPAS
+>SA211_MHAAABBN_01007
+MRKHLKTTVAAGVLGGALVFTGCSTGGDQDQGT-------PSTTSQH----EGHGSSSDS
+GG---MEHPMDGGPAPEGIETAASPTYPVGTEVTLTADHMEGMDGANAMIAGAYDTYTYA
+VDFTPSAGGEPVKDHKWVVQQEIKDAGDERLADGTEVTLEAEHMEGMKGAKATIASSTEE
+TVYMVDYESDGMTMTNHKWVVESELKPAS
+>TT9_LFPAFLNI_01246
+MRKHLMTTVAAGVLGGALVFTGCSTGGGQDQGT-------PSTTSQH----EGHGSSSDS
+GG---MEHPMDGGPAPEGIETAASPTYPVGTEVTLTADHMEGMDGANATIAGAYDTYTYA
+VDFTPSAGGEPVKDHKWVVQQEIKDAGDERLADGTEVTLEAEHMEGMKGAKATIASSTEE
+TVYMVDYESDGMTMTNHKWVVESELKPAS
+>TT9_LFPAFLNI_01556
+MTMRFWTRTVAVTAAGLLALTGCATGGEE-----------VATSSSH----GGHAG----
+-------HAMDGGPAPEGIEPAADPAHPVGTEVTLVADHMPGMEGAAATVVGAYETTAYS
+VDYRPTTGGPEVTDHKWVVQEELEDAGAERLPDGAAVTLAADHMPGMQGAEGTVHSSTDE
+TVYMVDYESDGMRMRNHKWVVESEIAPAG
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000041.fa

@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00718
+MNLTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPSAAIPYFGLIPLGLGLRAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWEHILF
+PIVLIGLGIVILVSGGAFGL
+>KBS0714_MOLHKGIG_00617
+MSLTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPPAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWENILF
+PIVLIGLGIVILVSGGAFGL
+>KBS0714_MOLHKGIG_02075
+MSLTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPPAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWENILF
+PIVLIGLGIVILVSGGAFGL
+>KD337_NAFOICDF_02214
+MILTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPSAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVKPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWEHVLF
+PIVLIGLGIVILVSGGAFGL
+>SA211_MHAAABBN_00340
+MILTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPSAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVKPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWEHVLF
+PIVLIGLGIVILVSGGAFGL
+>SA211_MHAAABBN_01780
+MSLTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPSAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWENILF
+PIVLIGLGIVILVSGGAFGL
+>TT9_LFPAFLNI_02003
+MTLSSALQAIGLFLVTNIDDLIVLSLFFGRGAGQRGTTVRILVGQYLGFAGILGAAVLVS
+LGAGVFLPPEVIPYFGLIPLGLGLWAAWQTWRGDDDDDDDEAKIEGKNVAAWTVAGVTFA
+NGGDNIGVYVPVFLSVGPGAVVAYCVVFLVLVAGLVGLAKFVATRRPIAEVLERWEHILF
+PIVLIGLGVFILISGGAFGL
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000042.fa

@@ -0,0 +1,15 @@
+>AS2_ACLBLIBL_00724
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>KBS0714_MOLHKGIG_00161
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>KBS0714_MOLHKGIG_01073
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>SA211_MHAAABBN_00336
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>SA211_MHAAABBN_00347
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>SA211_MHAAABBN_00792
+MAAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>TT9_LFPAFLNI_01022
+MAAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000045.fa

@@ -0,0 +1,63 @@
+>AS2_ACLBLIBL_00822
+MSS------VLDAAGTPATPHPSPAAPSARV--PSSSGGGRLGAGRIGVPALVCMIVAASAPLTAVAGGITSNFAVTGLL
+GVPLSFLVLGVVLLLFSVGYAAMSRHVHNAGAFFAYVARGMGKPAG-------VGAALVALVSYACMQVG-----IAGMF
+GFATSSFLEGTFGIAVPWWASALAAWVLVGVLGLYRVDFSAKVLMGVVALEFLVVCVYTVLGLRAAPEGVSAAGLLPGQL
+-------FTSG----VGAALVFSVAAFMGFESGAIYNEEVKDPKRTAGRATLISVVLIAVFYAFSA-----WAMVMTEGP
+GGVVAAAQAVGPDVVFAFLGAHAPLWFTDLANILFIVSLLAALLAFHNIVARYAFALGREHVLPAFLAHTSTRTGAPVGG
+SLVQSGAALVVLVVFALAGSRSDDPLFPVVTLFTWLTNMGAFGLVLLM--ALTSVSVIGYLRRH--RDEFGVFTRVVAPA
+LAAVGLLTLFVLTMVNFPVLLGADGTTPLSWLLPALVVTPG--ALGTAWALWL----RARRPATYAG-------------
+IAR---GGEL----------S
+>AS2_ACLBLIBL_01873
+MSASTPRRRVVDSEGHEHVYPTTSAIEQVNLLNPGGVSNKGLQAGKVGLLGAVVIGVSVVAPAYTLTSGLGPTISTVG-T
+HVPAILLLGFIPMLLVALGYRALNTRVPDSGTSFTWATHAFGPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQIT
+GSQAIADLAGNLWVNIPLTLVYLA---LAGWISHRGMETTKHLQYILVAFQILALGAFAVAALTQSSRG---AGFDPTPV
+QLDWFNPFTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPGRAAAVTVLVIIAVYILSALAVISWAGIGSEGL
+G----AGNPDNQESIFAVLAGPILGPFAVIMSSAILVSSLASLQSTMVSPARTLLAMGFYRAVPARFAELSPRFNSPAFA
+TWVCAGFAGLFYVVTRLL---SENALWDTIT---------ALGLMICFYYGITALACVWYFRREWFTSVGNALTTFLFPL
+IGGLVLLVMFCVTALDSTDPDYGSGSSVFG-VGTVFVLGMGVLAIGVVLMMWT----RLRHPAYFRGETLPQTDSTRPIP
+IIRPDDDGTAVVRDPNERTHS
+>KBS0714_MOLHKGIG_01015
+MSASTPRRRVVDNEGHEHVYPTTSAIEQVNLLNPGGVSNKGLQAGKVGLLGAVVIGVSVVAPAYTLTSGLGPTISTVG-T
+HVPAILLLGFIPMLLVALGYRALNTRVPDSGTSFTWATHAFGPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQIT
+GSQAIADLAGNLWVNIPLTLVYLA---LAGWISHRGMETTKHLQYILVAFQILALGAFAVAALTQSSRG---AGFDPTPV
+QLDWFNPFTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPGRAAAVTVFVIIAVYILSALAVISWAGIGSEGL
+G----AGNPDNQESIFAVLAGPILGPFAVIMSSAILVSSLASLQSTMVSPARTLLAMGFYRAVPARFAELSPRFNSPAFA
+TWVCAGFAGLFYVVTRLL---SENALWDTIT---------ALGLMICFYYGITALACVWYFRREWFTSVGNALTTFLFPL
+IGGLVLLVMFCVTAMDSTDPDYGSGSSVFG-VGTVFILGMGVLAIGVVLMMWT----RLRHPAYFRGETLPQTDSTRPIP
+IIRPDDDGSAVVRDPNERTHS
+>KD337_NAFOICDF_02256
+MLSTHQ---------------------------------------------SVSVSTSSVAPVYSAVVTVPLVVGLVG-S
+GAPLAYLLALLPILGVWAGMSANDEREPDKGSVYSWAVTGH-PVLGWTAGWCLALTGIVATSGLAYVALD------AWLP
+GLGA--------GVKVLIGAGIIA---AATALASANVRITAAVQTAGVLVQVA-----ATAYLAWVLAR---VGLTPLPP
+---------AGTVQDWVHAVLLAVFAFWGFDAVYALSEESH--RGVPRRSAAVSLGLLAAIFLVFS------------AL
+G-------ASEDPAAVAALTHPVV-------MAGVVVSCVGAIGSTLIPTARGLSAMAERGHLSAVLA--------PLRA
+AEVVSALLAIAWLVVSLA---VPGVFEDSIE---------MLSVFVGGYFTISSATAAAH--ASGGARMLHAATAVVMGL
+ITAASLAWMF--------EPDYGA-TVVGG-VGGVGLLAVGFAVLGLILAVGAGHRGRAVHPT--SG-------------
+--------------------V
+>SA211_MHAAABBN_00729
+MSASTPRRRVVDSEGHEHVYPTTSAIEQVNLLNPGGVSNKGLQAGKVGLLGAVVIGVSVVAPAYTLTSGLGPTISTVG-T
+HVPAILLLGFIPMLLVALGYRALNTRVPDSGTSFTWATHAFGPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQIT
+GSQAIADLAGNLWVNIPLTVVYLA---LAGWISHRGMETTKHLQYILVAFQILALGAFAIAALTQSSRG---AGFDPTPV
+QLDWFNPFTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPGRAAAVTVFVIIAVYILSALAVISWAGIGSEGL
+G----AGNPDNQESIFAVLAGPILGPFAVIMSSAILVSSLASLQSTMVSPARTLLAMGFYRAVPARFAELSPRFNSPAFA
+TWVCAGFAGLFYVVTRLL---SENALWDTIT---------ALGLMICFYYGITALACVWYFRREWFTSVGNALTTFLFPL
+IGGLVLLVMFCVTAMDSTDPDYGSGSSVFG-VGTVFILGMGVLAIGVVLMMWT----RLRHPAYFRGETLPQTDSTRPIP
+IIRPDDDGTAVVRDPNERTHS
+>TT9_LFPAFLNI_00958
+MSASTPRRRVVDNEGHEHVYPTTSAIEQVNLLNPGGVSNKGLQAGKVGLLGAVVIGVSVVAPAYTLTSGLGPTISTVG-T
+HVPAILLLGFIPMLLVALG-------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------
+>TT9_LFPAFLNI_00959
+--------------------------------------------------------------------------------
+--------------------------MPDSGTSFTWATHAFGPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQIT
+GSQAIADLAGNLWVNIPLTLVYLA---LAGWISHRGMETTKHLQYILVAFQILALGAFAVAALTQSSRG---AGFDPTPV
+QLDWFNPFTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPGRAAAVTVFVIIAVYILSALAVISWAGIGSEGL
+G----AGNPDNQESIFAVLAGPILGPFAVIMSSAILVSSLASLQSTMVSPARTLLAMGFYRAVPARFAELSPRFNSPAFA
+TWVCAGFAGLFYVVTRLL---SENALWDTIT---------ALGLMICFYYGITALACVWYFRREWFTSVGNALTTFLFPL
+IGGLVLLVMFCVTAMDSTDPDYGSGSSVFG-VGTVFILGMGVLAIGVVLMMWT----RLRHPAYFRGETLPQTDSTRPIP
+IIRPDDDGTAVVRDPNERTHS

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000051.fa

@@ -0,0 +1,57 @@
+>AS2_ACLBLIBL_01707
+MT----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---DGTPEIGDAEGEAPSEMVVQPLIRGEGPEVGPDDSVTVNYVGETWSEGTRFDSSWER
+GAPISFSLNQVIPGWKEGLAGQPVGSRVLLSIPAEKAYGEQGSPP-DIGPNEP-----LL
+FVVDILDAQAPS--TP----------------PTN
+>AS2_ACLBLIBL_01708
+MSSFQTPETTTPRRRRRLLPLVSLGVAGLFLA---TACASGQ--DDTPEPQEDAASASQ-
+-SAAPERAAVGEGQGEPDALEGLSFSEGEDGAPSVEVDGELATDQPTTRVLTAGEGDQVK
+EGDVLKMSIAVVDPASGDVLAENFTGDP-ESVPVDQQLKSMNPEMHDLLVRNGVGSVVAA
+YSPEREVPAPPADGASPSASPPPRPSPPSSSCTRSSRSCPRRP-------RARRSPSAT-
+---SGCPR----------------------------------------------------
+------------------------------------------------------------
+--------------SP-------------------
+>KBS0714_MOLHKGIG_01181
+MSSFETPQPPTARRRRRLLPLLSLGAAGLMLA---TACATGD--DGADQPHSDTASAST-
+-SAAPERAAVGEGQGEPDALTGVTFTEGDGGAPTVEIDGEIDTDQPTTRVLTAGEGEQVQ
+EGDVLKMSIAVVDPASGEVVAENFSGEP-EAVPVDDQLKSMNPEIHEMLVGSGAGTIVAA
+YSPEYDVSVPQTESASPSASPSTQTQPAQLFVYKIDAILPKQAEGEEVTERDERLPDVTV
+DEQSGRPSIAKPDGEAPQELVVQPLIEGEGHEVGADDTVTVQYEGVTWSDGEVFDSSWET
+GQAITFSLNRVIEGWKEGLAGQKVGSRVLLSIPAEKAYGEQGSPP-DIGENEP-----LL
+FVVDILDAQASA--TP----------------SAN
+>KD337_NAFOICDF_00314
+M-----------------RPLLPLALTVLMLSAGLTGCA---------------PSSPL-
+-DSVQVEEVTGQAQGR-----------------SVKFQTPVAVEEVSIRQLRAGTGAELD
+AGDAIVLKMDLFKGSDGTPIEAPFAGGPGQVIALDDQFKAQVPELHEALLQAQEGTMLAY
+SS-------PQTAGAAGDESTAVE-------IYEVAQKIPTTIEGKTSPVPDG-LPPITE
+DE-TGAPVVGPPQGQVPDELVAEYLIQGGGEPVQAGDTVIVHHLGMRWADAQVFDSSYQR
+GAPARFVLDNVIKGWQKGLIGKRTGSRVVLSVPVDQAYGTEA----ELGDNAPFPAGDLL
+FVIDILTTQP----TPPV--------------PTP
+>KD337_NAFOICDF_01606
+MN--RAPSSAAAPRRRRPRTALSLSLAGLLLA---TACGAGESSDGSSSPASASSSAAAQ
+GSEATSSSAAPVEYGDPAALDGLTFTVGADGTPSATVGKAIESDKAVVKTLTKGTGATPK
+AGDVLRLSTALLDPATGKVLNENFTTQP-EMVAVGSDPASMNPYVHKAVYGAPVGSDVAV
+Y-----LPAPSSSASAPSG---TEAAPAQLAVFRV------QGVAEQLPQADERLPKVSV
+DPATGRPSIEKPTGSAPEELVVEPLIQGEGPEVEDTDTVAVQYQGVTWSDGSTFDSSYER
+GTPATFSLDQVIAGWKEGLAGQKVGSRVLISVPSEKAYGAEGTPDGSIGKDED-----LL
+FVVDILAAQPAAASSPAAPSGSTAPSGSSSASPSN
+>SA211_MHAAABBN_00900
+MSSFETPQPPTARRRRRLLPLLSLGAAGLMLA---TACATGD--DGADQPHSDTASAST-
+-SAAPERAAVGEGQGEPDALTGVTFTEGDGGAPTVEIDGEIDTDQPTTRVLTAGEGEQVQ
+EGDVLKMSIAVVDPASGEVVAENFSGEP-EAVPVDDQLKSMNPEIHEMLVGSGAGTIVAA
+YSPEYDVPVPQTESASPSASPSTQTQPAQLFVYKIDAILPKQAEGEEVTERDERLPDVTV
+DEQSGRPSIAKPDGEAPQELVVQSLIEGEGREVGADDTVTVQYEGVTWSDGEVFDSSWET
+GQAITFSLNQVIEGWKEGLAGQKVGSRVLLSIPAEKAYGEQGSPP-AIGENEP-----LL
+FVVDILDAQAPA--TE----------------SAN
+>TT9_LFPAFLNI_01131
+MSSFETPQPPTARRRRRLLPLLSLGAAGLMLA---TACATGD--DGADQPHSDTASAST-
+-SAAPERAAVGEGQGEPDALTGVTFTEGDGGAPTVEIDGEIDTDQPTTRVLTAGEGEQVQ
+EGDVLKMSIAVVDPASGEVVAENFSGEP-EAVPVDDQLKSMNPEIHEMLVGNGAGTIVAA
+YSPEYDVSVPQTESASPSASPSTQTQPAQLFVYKIDAILPKQAEGEEVTERDERLPDVTV
+DEESGRPSIAKPDGEAPQELVVQPLIEGEGREVGADDTVTVQYEGVTWSDGEVFDSSWET
+GQAITFSLNQVIEGWKEGLAGQKVGSRVLLSIPAEKAYGEQGSPP-DIGENEP-----LL
+FVVDILDAQASA--TP----------------SAN
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000054.fa

@@ -0,0 +1,56 @@
+>KBS0714_MOLHKGIG_01590
+MPVAPRPSDGAASSVFTPHQQRILAVLLIPIFMSLLAVSSINVALPALQRGLDASDAELQWAISGYTLVFGMVLVPAGRA
+GDLFGRRRLFMVGLGVFALGALLSGLAPTGVLLVLARLVMGVGAGLLNPQVTGFIQSEFSGTSRARAFGALGAVVGVSVA
+VGPLLSGGLIAWLGGDLGWRATFLVNVPIALGALVVARHWLPRTAPERARRPDLDPVGVVLLAGALVAVMLPFL---DRE
+LGPWRFVLVPVGIGLAALWTRWEARYARRGRAPMVDLRLFQTRSFACGALLIAIYFTGSTSMFVVIAMFMQNGLG-----
+---YPALHAALIGLPSAVMSSVMSTVAGRVVLRTGRK-IVVLGIALALLAVVGSIGVAWANR-----EFGLSP--WWLLL
+TLAILGAGQGLVVSPNQTLSLAEVPPRHSGTAGGVLQTGQRVGTAVGTAVIVGVFLGVASGADW----------------
+--DGAFMAAFT-----LVAGCMALALLVALADLRGPRTAAPRG------------------------
+>KD337_NAFOICDF_00643
+M--------------------------LFASFMDLLDVTIVTVAAPHIAADLNASPAQLQWMLAAYTLALGSGLITGGRI
+GDDYGRRRVFLAALAAFAIASAACALAPTAGALIAVRAVQGLAGGFMVPQVFGIIRSSFEPAAMAKAFGAYGAVQGLASV
+AGPLIGGALADADLWGLGWRTIFWINIPIALVALVLGWRVLPDS--RAAARSRLDGVGALLAAVGVLLVLLPLVQGRDWG
+WPTWGWALLAAGVLVLAGFLRYENALARRGGEPVLDPDLLRVRPFVAGLAASVLFFGGLASFFLVVSIYLQAGTG-----
+---RSAWDTGLVILPYAIGSMLTSGAGVALAARAGRA-LLLTG-SLTLAA--SQALLWWLVR-----DGSTTPDYWPLAG
+AMFLGGLGLGLGAPILVNVVLAGVPGRRAGAAGGVLSTVNQIGGAVGVAVLGTVFFNAASSAGP----------------
+--ATAPAELFGDALAQVMPWQVATYLLAAVAMLALPKTAAPHQD-----------------------
+>KD337_NAFOICDF_00714
+M----------AGDCIRQIPRWGFVLSLAATILMMAAASAPSLFYPQIAERLGLIPVATTLVFAVYTFTLLAALLYLGPL
+SDHVGRRPVVAAGSLALALSVAMFWFAGSLAALLVARALQGLAAGLLIPALSAMM-IDFESPSH-RNIAALWNTIGPMIG
+LG---AGALGAALLLDLTSEPTTAVFGSLVLAFLIVA----------------------------TVVWSTPEL------
+---------------------VPKTQIRRGD---LRPRFTVPPHL---RRMFTVGVPVIIAGWATNGLFLALGADLVGSE
+LGGSTHTQAGIVLFALAISGVTASS---VLQRRSART-ISLYA-TSALAF--GTAVSIGAL------ALGSYP---AYVA
+SVAIVGSGFGTAFLGVLRTLMPHTASSERAAVMAVIYTVAYLAFGVPTIVAGLLV-----------------------PV
+LTLSGTMTILG-------AIIIALSLVATVLRLRIPHPAAGPAEADDFPEPPTGSHRRSAPDREEQP
+>KD337_NAFOICDF_01240
+M----NPSAGTSGGVFTARQRRVLAVLLVPVFMSLLAVSSINVALPSLQRGLGASDAELQWSISGYTLAFGMVLVPAGRA
+GDLLGRARLFRIGVLGFGLGALLSGLAPSGLLLVLARVLMGVGAGLLNPQVSGFIQAEFEGQARARAFGALGSTVGVSVA
+AGPLLAGGLIAVLGGDLGWRATFLVNVPIALAAVLIARGWLPEESPAPAGRRDFDPVGVALLASALVAVMLPFL---DRG
+LGPWRFALLPLGAALAAGWAVWERGYRARGRAPMVDLSLFGLPGFRNGALMIGVYFTGSTSLFIVVAMFMQNGLG-----
+---YGALQAALVGLPSAVCSSVMATVAGRLVLRAGRR-LVVVGVSLVLAAVVGSIGVVAAHQ-----AFGLSP--WWLLA
+TLGLFGMGQGLTVSPNQTLSLAEVPRPQSGTAGGILQTGQRVGTSVGSAVIVGVYLGVAGTGGP----------------
+--DRGFMAALG-----LIAVSIAAALAVAVADQR--RRARQGGR-----------------------
+>KD337_NAFOICDF_01828
+M----------------PRPRLLLAVILLAQFVIPLSISGTAVALPAIASDLGSDPTPLQWVVNGFNVAFAVCTIVWGAC
+SDRIGYTRSFRIGIAIAIAGGIVSMFAPNIAVLDAGRIIAGIGSAAVLTSAAPILSHLFEGKARAQAFALFGTINGLGLA
+AGPALSGLLLSA----WGWQGIFAAHT-------------------------------IVLIVAFIGAARLPQL---GRG
+GTSLR---------------------------EILDFSALKAPKF---LAMTLVPIAGAI-GFVTFLTYLPSALGAIHGL
+TAGVTGALMLVMTIPVLIAPVAVH----RLMERSHLTPTAIVAVSFACLI-VGGIGVLLLLRPDLPVALGVTP-------
+-MILLGLGFGLPLGFVDAEALAAVPAERAGAASGVINLFRIGSEAVFVAAYGALLAAVITTTLPGTTGELIASGSPGEPW
+IYHSGLMAAAG-----TMIGLVAIAGVTFLALTRAANRSAVTARQ-----------------VEVAR
+>SA211_MHAAABBN_01302
+MPVAPRPSDGAASSVFTPHQQRILAVLLIPIFMSLLAVSSINVALPALQRGLDASDAELQWAISGYTLVFGMVLVPAGRA
+GDLFGRRRLFMVGLGVFALGALLSGLAPTGVLLVLARLVMGVGAGLLNPQVTGFIQGEFSGASRARAFGALGAVVGVSVA
+VGPLLSGGLIAWLGGDLGWRATFLVNVPIALGALIVARQWLPRTAPERARRPDLDPVGVVLLAGALVAVMLPFL---DRG
+LGPWRFVLVPVGIGLAALWTRWEARYARRGRAPMVDLRLFQTRSFACGALLIAIYFTGSTSMFVVIAMFMQNGLG-----
+---YPALHAALIGLPSAVMSSVMSTVAGRVVLRTGRK-IVVLGIALALLAVVGSIGVAWANR-----EFGLSP--WWLLL
+TLAILGAGQGLVVSPNQTLSLAEVPPRHSGTAGGVLQTGQRVGTAVGTAVIVGVFLGVASGADW----------------
+--DGAFMAAFT-----LVAGCMALALLVALADLRGPRTAAPRG------------------------
+>TT9_LFPAFLNI_01517
+MPVAPRPSDGAASSVFTPHQQRILAVLLIPIFMSLLAVSSINVALPALQRGLDASDAELQWAISGYTLVFGMVLVPAGRA
+GDLFGRRRLFLVGLGVFALGALLSGLAPTGVLLVLARLVMGVGAGLLNPQVTGFIQGEFSGASRARAFGALGAVVGVSVA
+VGPLLSGGLIAWLGGDLGWRATFLVNVPIALGALIVARQWLPRTVPERARRPDLDPVGVVLLAGALVAVMLPFL---DRG
+LGPWRFVLVPVGIGLAALWTRWEARYARRGRAPMVDLRLFQTRSFACGALLIAIYFTGSTSMFVVIAMFMQNGLG-----
+---YPALHAALIGLPSAVMSSVMSTVAGRVVLRTGRK-IVVLGIALALLAVVGSIGVAWANR-----EFGLSP--WWLLL
+TLAILGAGQGLVVSPNQTLSLAEVPPRHSGTAGGVLQTGQRVGTAVGTAVIVGVFLGVASSADW----------------
+--DGAFMAAFA-----LVAGCMALALLVALADLRGPRTAAPRG------------------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000057.fa

@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_00027
+MSETTRTPGTGRGTMRAVRFTGEGGAGSLAVGQEPIPTPGPGEVLVKVAAAGLNRADVMQ
+-REGKYPPPPGASDVPGLEVSGVVVALGEEAGLPGEGRFAPGDEVCAL----LAGGGYAE
+HVVVPAGQLMAVPPGVDLVTA------AALPEVACTVWSTMSERGGVRAGDVVLVHGGSG
+GIGTFAVQYLAAIGARVLATAGGPAKCERVRGLGAEDVFDHRSGEPGAFADWVLERTGGR
+GADVVLDVVGGPYLDANVRCLAEEGRIVVIA--VQGGPKADGFNLMRLVSKRGWLTGATL
+RARSVVDKARIVAGTERAVAPLVAAGRIDLAVGARFPLDDAAAAHRRFEAEDRVGRVLLV
+TDPADALWPQEDRT
+>KBS0714_MOLHKGIG_00310
+MD----VP----AQMRAVRFTGAGDNGVVRVGHEPVPDPGPGEVLVHVAAAGLNRADIAQ
+-REGRYPPPRGASEIPGLEVSGTVAALGPEAGMPGEGRFAVGDRVCAL----LAGGGFAE
+YVAVPAGQLMAVPDGVGLVEA------AALPEVACTVHSTLVGRAGVQAGDRVLVHGATG
+GIGSFAVQFLTAVGARVLGTAGGPEKVALGRGLGAEHMFDHRAAESGAFAPWVKEVTDGH
+GADVILDVVGAPYLAPNVSALAPEGRIVTLA--VQGGAVPEDFNIMKLVVKRGWLTGATL
+RSRSVTDKAGIVAAAERAVWPLVAAGRIDASVGACFPLAEAAEAFDWFDSATRTGKVVLV
+TDPADARRPSGDRA
+>KD337_NAFOICDF_00023
+MD----TA----PDMLAVRFAGAGGTDVIRVGREPVPEPGPGEVLVRVAAAGLNRADVVQ
+-REGHYPVPPGASEVPGLEVSGTVVALGPQAGVAGEGRFAVGDRVCAL----LAGGGYAE
+HVAVPAGQLMSVPDGLDLVSA------AGLPEVACTVHSNLEGRAGVRPGEWALVHGATG
+GIGAFAVQYLSAVGVRVLATAGGPAKVARALELGADAAFDHRAAAPGAFADWVREITGGH
+GADVVLDVVGGPYLAPNVKALAMDGRIVVIA--AQDGPVPEDFHLMRLAARRGWVTGSLL
+RPRPPDEKAGIVAAAERAVWPLVAAGRIDPGVTARFPLREAAAAHAHFEGAARMGKVLLV
+TDDADALLPGG-AA
+>KD337_NAFOICDF_00654
+MHPS--LP----RTMLAAIIPAPGGRPELR--QCPVPEPGPGEVLVRVMASSVNPTDVMT
+WRRGMFVTGQTVPFVGGYDMSGIVVKLG-----RGVTALDVGDAVTGMPRFPAPAAAFAQ
+YSAVPARHLARIPTGTEDLSAGAWGRWAGLPLAGLTAYQALVDTAHLQSGQTVLVHAASG
+GVGSLACQLAVNLGAQVTAVTSDRGR-TLVEVLGTRHVVDR------ATVDW--QRFAG-
+CFDVVLDTVGGDTTPRSLAMASPDGVVVALHPYAHDDLAQRDPRLRRMLVE---------
+-----PDHHALELLIEQA-----ARGRLTVQVGAGYPLSDLGDALLHVETNKTPGKTIIH
+I--------QGDNA
+>SA211_MHAAABBN_00025
+MD----VP----AQMRAVRFTGAGDNGVVRVGHEPVPDPGPGEVLVHVAAAGLNRADIAQ
+-REGRYPPPRGASEIPGLEVSGTVAALGPEAGMPGEGRFAVGDRVCAL----LAGGGFAE
+YVAVPTGQLMAVPDGVGLVEA------AALPEVACTVHSALVGRAGVQAGDRVLVHGATG
+GIGSFAVQFLAALGARVLGTAGGPEKVALGRRLGTEHMFDHRAAESGAFAPWVKEVTDGH
+GADVILDVVGAPYLAPNVSALAPEGRIVTLA--VQGGAVPEDFNIMKLVVKRGWLTGATL
+RSRSVVDKAGIVAAAERAVWPLVAAGRIDASVGACFPLAEAAEAFDWFDSATRTGKVVLV
+TDPADARRPSGDRA
+>TT9_LFPAFLNI_00317
+MD----VP----AQMRAVRFTGAGDNGVVRVGHEPVPDPGPGEVLVHVAAAGLNRADIAQ
+-REGRYPPPRGASEIPGLEVSGTVAALGPEAGMPGEGRFAVGDRVCAL----LAGGGFAE
+YVAVPAGQLMAVPDGVGLVEA------AALPEVACTVHSALVGRAGVQAGDRVLVHGATG
+GIGSFAVQFLAALGARVLGTAGGPEKVALGRRLGAEHMFDHRAAESGAFAPWVKEVTDGH
+GADVILDVVGAPYLAPNVSALAPEGRIVTLA--VQGGAVPEDFNIMKLVVKRGWLTGATL
+RSRSVVDKAGIVAAAERAVWPLVAAGRIDASVGACFPLAEAAEAFDWFDSATRTGKVVLV
+TDPADARRPSGDRA
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000059.fa

@@ -0,0 +1,48 @@
+>AS2_ACLBLIBL_00057
+MLSE------------------------------------KSRPVIEATA--AVVAEHMPEITPK---------------
+--------------------------------------------------------------------------------
+-----FYAHMFEAHPELLDGVFSRANQRSGEQAQALAGSIVTFAVH----LLEHPDTLPEAVLARIAHKHTALGIVPEQY
+QIVYENLFWAIADVL-------GEAVTPEVAEAWTEVYWLMADALIKIEEGLYAQQANTKMWTDWKVVAKEPTGNAAVTF
+RFAPADETPQTPGRPGGYLSVRLKVEDGLRQCRQYSLSDHAESTDERVITVKLDEGGEVSPVLIQNVEVGDVIELSNPYG
+DITLRD--DAETPLVLATAGIGITPAAAILDTLASRGSQREVHFFHGDASWDSVALREQVAESLQALENGTGRLWLGVPP
+QEA---PAAFTTTEGLMEFDDVELP--ADASYLLCGPLAFMQATRSKLIDAGVPATSIRYEIFGPDLWLAA-
+>KBS0714_MOLHKGIG_00297
+MLSE------------------------------------KSRPVIEATA--AAVAEHMPEITPL---------------
+--------------------------------------------------------------------------------
+-----FYAHMFEAHPELLDGVFSRANQRNGEQAQALAGSIVKFAVH----LLENPGTLPEAVLSRIAHKHTALGIVEEQY
+PIVYENLFWAIGEVL-------GDAVTPEVADAWTEVYWLMADALIKIEKGLYAQQANDRMWTDWKVVAKEPTGNAAVTF
+RFEPADDTPQSRGKAGGYVSVRLKVEDGLRQCRQYSLSEKAESATERVITVKLDEGGEVSPMLIQNVEVGDVIELSNPYG
+DITLED-EDSTAPLVLATAGIGITPAAAILDALAQQGSDRQVLLLHGDASWEAVALREQVTESLAALAHGDARLFLGVRP
+EQD---PEGVTTVEGVMHFDDVELP--RDGHYILCGPLAFMQSTRSKLIDAGVPATSIRYEIFGPDLWLAA-
+>KD337_NAFOICDF_00035
+MLSE------------------------------------KSRPVIEATA--AVVSANMPQITPA---------------
+--------------------------------------------------------------------------------
+-----FYGHMFEAHPELLDGTFSRANQLNGEQAQALAGSIVHFAAH----LLEHPDSLPEAVLARIAHKHTALGITEDQY
+QVVYENLFWAIAQVL-------GDAVTPEVAEAWTEVYWLMADALITLEKDLYAVQANDRMWTDWKVVAKEPTGNAAVTF
+RLEPADDTPQTPGRPGGYVSVRVTVADGLRQARQYSLSESASSTGQRVITVKLDEAGEVSPVLIQEVEVGDVVELSNPYG
+DITLQD---SDAPLVLMTAGIGITPAAAILDSLAASGSQREVRVLHGDASWDSVALRDQVLEDVASLPHAQADLWFGVAP
+ETA---PEGVSVHEGKVDTAAAALP--EGADYILCGPLAFMKSERSALIEAGVPAPRIRYEIFGPDLWIAAT
+>KD337_NAFOICDF_01222
+MPAHGWGARAGRTSFREHPVDVQECLWRGAHASSHDRSALHSRPSRGGSADPAPADRPPPPLTPAPGPAGIRDRPAGRIP
+AWWRDASGSLLWLVLLAVTALWVHGGGVQDLAAVGSGLTSLGRLTGLIASALLLAQVFLMARVPLVEQAWGQDRLTRVHR
+RVGFTSFTLMF-AHLALITAGYA------WDTPAGLWGTLVDFAVDYPGMLLAIAGTAALVMVVVTSFKAARARLRYESW
+HLIHLYGYLGAGLALPHQLWTGQEFLASPVATAFWWTLWAVTAGAVVVFRALLPLWCSAR--AGLRVQSVTAAGPHAVTV
+TVA-GRGAHRLHARGGQFFQWRFLDGPGWTRAHPYSLSAAPDGRTLQFTAAVVGDGTG----RLWDMRPGTRVLVEGPYG
+R--MHDGVRTGRKALLMGAGIGITPMKALLESLPADAG--EITVVHRVSDPDDPTLHADLLAAARTRGARYIRLEGRRRP
+GADSWLPASAGDVDDVTALRRI-CPDLAEHDVFVCGAPAWTDLVRQAARRGGVPAERIHDERFSF-------
+>SA211_MHAAABBN_00005
+MLSE------------------------------------KSRPVIEATA--AAVAEHMPEITPK---------------
+--------------------------------------------------------------------------------
+-----FYAHMFEAHPELLDGLFSRANQRNGEQAQALAGSIVRFAVH----LLENPGTLPEAVLARIAHKHTALGITEDQY
+QIVYENLFWAIADVL-------GDAVTPEVAEAWTEVYWLMADALIKLEKGLYAKQANDKMWLDWKVVSKEPTGNAAVTF
+RFEPADDTPQTPGEAGGFVSVRVKVADGLRQARQYSLSDHAASTTERVITVKLDEGGEVSPMLIQNVEVGDVIELSNPYG
+DITLED-EDSTAPLVLATAGIGITPAAAILDALAQQGSDRQVLFFHGDASWEAVALREQVTESLAALPHGDARLFLGVRP
+EQD---PEGVTTVEGVMHFDDVELP--RDGHYILCGPLAFMQSTRSKLIDAGVPATSIRYEIFGPDLWLAA-
+>TT9_LFPAFLNI_00304
+MLSE------------------------------------KSRPVIEATA--AVVAEHMPEITPL---------------
+--------------------------------------------------------------------------------
+-----FYAHMFEAHPELLDGVFSRANQRNGEQAQALAGSIVKFAVH----LLENPGTLPEAVLSRIAHKHTALGIVEEQY
+PIVYENLFWAIGEVL-------GDAVTPAVADAWTEVYWLMADALIKIEKGLYSQQANDRMWTDWRVVAKEPTGNAAVTF
+RFEPADDTPQSRGRAGGYVSVRLKVEDGLRQCRQYSLSEKAESTTERVITVKLDEGGEVSPMLIQNVEVGDVIELSNPYG
+DITLED-EDSTAPLVLATAGIGITPAAAILDALAQQGSDRQVLFFHGDASWEAVALREQVTESLAALPHGDARLFLGVRP
+EQD---PEGVTTVEGVMHFDDVELP--RDGHYILCGPLAFMQSTRSKLIDAGVPATSIRYEIFGPDLWLAA-

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000063.fa

@@ -0,0 +1,90 @@
+>AS2_ACLBLIBL_00086
+M--------TPPLSRRHRALGMTSALALVLTGASAAGATSGTGAP-AAAEADAVTAVTGAAGTADQGP----RTAPEVFE
+DGGYIVLMAEAP--VASYDGG-TPGYAPTKPGKGLGRDKGFNPKSANAKKYAAHLERGQDRALERAGAEAAPHTRYTTSL
+NGFAGELTAQEAAALASDPAVLAVVPDEIRQPDTVSSPDFLGLTGKKGLWAQVVGKKAPATDAGRGVVVGVVDSGIRPE-
+-------AASF--QDRGHPAAPADWAGG---------------CETGDEEAFPADSCNDKLIGAKYFVQGF----GAGRL
+APVETLSPLDAGGHGTHTASTAAGNAGVPAVVDGTPRGEISGMAPGAHVAAYKACWEGV--PSGGCATSDTVAAINAAVE
+DGVDVLNYSISGTTSNVVDPVEVAFMHAAAAGVFVAASSGNSGPTVSTTAHPSPWITTVAAST-QAVYEQTLVTGDGQRF
+IGSSITAPLEAETPMVHAADLAADGVDAARAALCLPGTLDATAAADMLVVCDRGENARAEKSQVVADAGGAGMVLVNVAD
+SGLNADLHALPAVHLPHTERDRLLAYVDTEEPTGRILP--TTEGTTTRVPEVAGFSSRGPSLAAASDLLKPDVSAPGVDV
+LAAYS---PDEAGEDFAYASGTSMSSPHVAGLAALVKQGRPDLGPMEIKSSLMTTAGDHASATSP-----FAEGAGFVDP
+MKILDPGLVFDTDQGDWYDYLAGQGIVFSGSGEPVSETPIDASDLNVPSIAVGELYGSQTVTRTLKNVGGNNGVWTARVE
+GMEGMDVSVSPQVIKPRRGQEQDVEITLTAAGAPAGQWATGHVVWSGPAGK---EVRIPVVARPGVADAPASVTVDRDAD
+GLELPVLSGVDGTFTTRVNGLTAGTEHIGTTVRRMFFDSTDPALTGHDFAYPRGYPTVRIEAETSAEDVDLDVYVTGSWT
+SYPVARSVTRGTGMEVFQGPIYSSAPQHRIFVVAKTGAD---GVEHDEPIDYT-LRVFFPQAGGG------------DNG
+VLSFDPASAAVKPGQTHVFHGTLNTDGTSVYTGTVDILHEGKVV----DTTQIRVQ--
+>AS2_ACLBLIBL_00159
+MRKAEAMPHIPTPARRRRAL------------AAAVVGASLVAAPALAASAIAVELPDGSVVTSPQGE----AKVEQQFE
+DGRYFVVLKDAPSVTAQEAGAPAPGAAPKAK---------FDPDHPRVKNYEAKLQRQQEKVARDNGVE--PKTTFQRAV
+NAFVAELTAEEAMRLSKDSAVLGVAPDEQVAPD-YSSTEFLGLPGKKGTWNTTYGK---PENAGKGVVVGVIDTGIHPDN
+PFIDAEPVKPL--KGKAKVGEPYRTADGDIAVLKADGTTATAECETG--PGFPADSCDTKLIGAYAFSDDFERFVPVENR
+HPAEQLSPLGVFSHGTHVATTILGNTGVEQTIDGTSFGEGAGVAPAASLISYKICWEDNDPNTGGCYTSASVAAIEQAIE
+NNVDVLNYSISGSNTTIVDPVAMAFKSAAEAGIFVAASGGNSGPTPNTVNHSSPWLTTVAAETFSNELTGTVEFSDGTKY
+RGASSAGSDAGPAEVIHASEVAAG--DAEAARLCLPGSLT-AEAADKIVLCERGQNARVEKSAVVAEAGGVGMILANTPT
+GSLDADIHSVPTVHINDT--DGVIEKVKSSDLTATIVRGDTTGLPQDPLPQIAGFSSRGPSNAVNQEFLKPDVAAPGVNV
+IAGVSPLDPDYNGNEFGLMSGTSMASPNLAGMAALLIGKEAAWSPMAVKSALMTTAGDVFNADGSVNEDNFATGAGSADP
+KAAARPGLVYEADSTQWDALLLGE---------------IAGREVNVPSVAIPDVVGSASVTRTLTAT--ENGRWQFS-G
+SVPGFEVTASPSMLDLKKGQSAEVELTFTRTDAEVNTWAHGSMSWSTAKGKAVPTVTSPVTLKALSATATSAVEGSGAEG
+SATVEIEPGMTGELTPQILGLGKVEAAEVSAVANTSASGA--ALAGRVVNVEEGTKALVASINAGAEGVDWDLYVI----
+------------------------TPQGRQLNMATAAGDETLTIQNPVPGEYTVIGHLYSAPAGTDTASLETLKLREDVG
+NLTVDPNPVPVTTGEA--------TTAELAWSGLTEGTWKGLVTWDAGVTTDVTVTVP
+>KBS0714_MOLHKGIG_00221
+MRKAEAMPQNPTPARRRRAL------------AAAVAGASLVAAPALAVSATAVELPDGSTVSSPQGE----VQVQQQFE
+DGRYFVVLKDQPSVTAPEAGA-VPGAAPKAK---------FDPSHPRVKNYEAKLQRQQAKVAKAHGAK--AEISFQRAV
+NAFVAELTAEEAQSIAKDPAVLGVAPDEQVAPD-YSSTEFLGLPGKKGTWKSVYGK---AENAGKGVVVGVIDSGIHPDN
+PFIDGQPVQPL--KGKAKVGVPYRTADGQIAVLKADGTTATAECETG--PDFPASSCDSKLIGAYAFSDDFERFVPVDER
+APEERISPLGVFSHGTHVATTILGNTGVEQTIDDDSFGEGAGVAPAAHLISYKICWEDTDPDTGGCYTSASVAAIEQAIE
+NNVDVLNYSISGSNTSIVDPVAMAFKSAAEAGIFVAASGGNSGPGPNTVNHGSPWLTTVAAETFSNELTATVQFSDGTQL
+RGASSARTGVGPAEVIHASEVAAG--DAEAARLCLPGGLT-EEAADKIVLCERGGNARTEKSQVVEEAGGVGMILVNTPS
+GSLDADIHAVPTVHMND---NGVIEKVKSSDLTATVVPGDTTGLPEDPLPQIAGFSSRGPANAVNQELLKPDLAAPGVNV
+IAGVSPLDPDYHGNTFGLMSGTSMASPNLAGMATLLIGKYPAWSPMAVKSALMTTAGDVYNADGTVNTDNFATGAGSADP
+AAAARPGLVYDSGKEQWDALLRGD---------------IAGREVNVPSLAIPDVVGSATVTRTVTAL--ENGRWQFS-A
+SVPGFEVTASPAVLDLKAGQSADVELTVTRTDAAVNTWTHGSMSWTTAKGKAVPEVTSPVTVKAKSAAVTSAVEGSGATG
+SADVEITPGVTGELTPQVLGLGKVDSTVAAATASNSLVSS--ALAVSTVTVEEGTKSLVASINAGAAGADWDLYVI----
+------------------------TPEGKQLSRATADESETLTIANPTPGAYTVVGHLYAANGGKDTGTLETLKLREDAG
+NLTVSPNPVPVTSGKA--------TEATLSWSGLTSGTWKGLVTWDAGITTDVTVQVP
+>KD337_NAFOICDF_00117
+------MNRHP---QRLRLL------------GAAVTAVGLMAAP-LAAPAFA----------APQAEHAVGVQAATPLK
+AGRYFVILKDAPSAVAESQAT-APGAAPSAK---------FDANHPRVKNYEAKLKRQQEKVAAQQGVT--PKVTFQRAL
+NGFVAELSAEQAQAYAEDPAVLAVTADEQVAPD-YTSTDFLGLNGKKGAWNTTFGK---AENAGRGVVVGVIDSGIYPDS
+PFLDGTPVGPRTNNGKLKAGDTFRTADGRIAVQKADGTLATAECQSG--PDFPASTCDSKLIGAYAFSDDFVRGTPVEKR
+DPAERISPLGVKSHGTHVATTIVGAKDVEQTIDGASFGLGSGVAPAAKLISYKVCWEDTDPDTGGCYSSASVAAVEKAIE
+NNVDVLNYSISGNNTSVVDPVALAFRSAAEAGIFVAASGGNSGPTPSTVNHSSPWVTTVAAETFSNELTGTLELSDGTKV
+RGASSARTGVGPAPVIHAADAAAAGVSADDARLCKPGALDPAKAAGKIVLCERGVNARVEKSAVVKDAGGVGMILVNVTP
+GSLDADIHAVPTVHTND---ASLIAKAKAGGLQATIVPGDTTGQAPDPLPQIAGFSSRGPSNAVNQEFLKPDVAAPGVNV
+IAGVSEYDSDYHGNVFGLMSGTSMASPNLAGMATLLIGKHPEWSPMAVKSALMTTAGDVYNADGTVNQDNFATGAGSADV
+AAANRPGLVYESDATQWNALILGD---------------LAGREVNVPSVALPDVLGTASVKRTVTAL--ENGRWTFS-G
+SVPGYTVTASPSVLDLKAGQKAEVTLTFTRTDAALSQWTHGSFSWTTAKGKAVPSVTSPVTLKSVPATADASVTGTGASG
+SAAVAVQPGFTGQLTPSVLGLNKVESQAVTLQPGGS--------KVTPVTVAPGTKSVTFAVDSGVDTADWDMLVQ----
+------------------------TPSKKQFTSATESSDESVTIQDPEPGTYLVLTQLYANPAGADTAALETVQLRSDAG
+NMTVTPNPIPVTTGQE--------TSATVNWTGLTSGTWRGQVTWAEGTATQVEVTVP
+>SA211_MHAAABBN_02234
+MRKAEAMPQNPTPARRRRAL------------AAAVAGASLVAAPALAVSATAVELPDGSTVSSPQGE----VQVQQQFE
+DGRYFVVLKDQPSVTAPEAGA-VPGAAPKAK---------FDPSHPRVKNYEAKLQRQQAKVAKTHGAK--AEISFQRAV
+NAFVAELTAEEAQAIAKDPAVLGVAPDEQVAPD-YSSTEFLGLPGKKGTWKSVYGK---AENAGKGVVVGVIDSGIHPDN
+PFIDGQPVQPL--KGKAKVGVPYRTADGQIAVLKADGTTATAECETG--PDFPASSCDSKLIGAYAFSDDFERFVPVDER
+APEERISPLGVFSHGTHVATTILGNTGVEQTIDDDSFGEGAGVAPAAHLISYKICWEDTDPNTGGCYTSASVAAIEQAIE
+NNVDVLNYSISGSNTSIVDPVAMAFKSAAEAGIFVAASGGNSGPGPNTVNHGSPWLTTVAAETFSNELTATVQFSDGTQL
+RGASSARTGVGPAEVIHASEVAAG--DAEAARLCLPGGLT-EEAAGKIVLCERGGNARTEKSQVVEEAGGVGMILVNTPS
+GSLDADIHAVPTVHMND---NGVIEKVKSSDLTATIVPGDTTGLPEDPLPQIAGFSSRGPANAVNQELLKPDLAAPGVNV
+IAGVSPLDPDYHGNTFGLMSGTSMASPNLAGMATLLIGKYPAWSPMAVKSALMTTAGDVYNADGTVNTDNFATGAGSADP
+AAAARPGLVYDSGKEQWDALLRGD---------------IAGRDVNVPSLAIPDVVGSATVTRTVTAL--ENGRWRFS-A
+NVPGFEVTASPAVLDLKAGQSADVELTVTRTDAAVNTWTHGSMSWTTAKGKAVPEVTSPVTVKAKSATVTSAVEGSGATG
+SADVEITPGVTGELTPQVLGLGKVDSTVAAATASNSLESS--ALAVSTVTVEEGTQSLVASINAGAAGADWDLYVI----
+------------------------TPEGKQLSRATADESETLTIADPAPGAYTVVGHLYAANGGKDTGTLETLKLREDAG
+NLTVSPNPVPVTSGKA--------TEATLSWSGLTSGTWKGLVTWDAGITTDVTVQVP
+>TT9_LFPAFLNI_00222
+MRKAEAMPQNPTPARRRRAL------------AAAVAGASLVAAPALAVSATAVELPDGSTVSSPQGE----VQVQQQFE
+DGRYFVVLKDQPSVTAPEAGA-VPGAAPKAK---------FDPSHPRVKNYEAKLQRQQAKVAKAHGAK--AEISFQRAV
+NAFVAELTAEEAQAIAKDPAVLGVAPDEQVAPD-YSSTEFLGLPGKKGTWKSVYGK---AENAGKGVVVGVIDSGIHPDN
+PFIDGQPVQPL--KGKAKVGVPYRTADGQIAVLKADGTTATAECETG--PDFPASSCDSKLIGAYAFSDDFERFVPVDER
+APEERISPLGVFSHGTHVATTILGNTGVEQTIDGDSFGEGAGVAPAANLISYKICWEDTDPDTGGCYTSASVAAVEQAIE
+NNVDVLNYSISGSNTSIVDPVAMAFKSAAEAGIFVAASGGNSGPGPNTVNHGSPWLTTVAAETFSNELTATVQFSDGTQL
+RGASSARTGVGPAEVIHASEAAAG--DAEAARLCLPGGLT-EEAADKIVLCERGVNARTEKSQVVEEAGGVGMILVNTPS
+GSLDADIHAVPTVHMND---NGVIEKVKSSDLTATIVPGDTTGLPEDPLPQIAGFSSRGPANAVNQELLKPDLAAPGVNV
+IAGVSPLDPDYHGNTFGLMSGTSMASPNLAGMATLLIGKYPAWSPMAVKSALMTTAGDVYNADGTVNTDNFATGAGSADP
+AAAARPGLVYDSGKEQWDALLRGD---------------IAGRDVNVPSLAIPDVVGSATVTRTVTAL--ENGRWRFS-A
+NVPGFEVTASPAVLDLKAGQSADVELTVTRTDAAVNTWTHGSMSWTTAKGKAVPEVTSPVTVKAKSATVTSAVEGSGATG
+SADVEITPGVTGELTPQVLGLGKVDSTVAAATASNSLESS--ALAVSTVTVEEGTKSLVASINAGAAGADWDLYVI----
+------------------------TPEGKQLSRATAAESETLTIANPTPGAYTVVGHLYAANGGKDTGTLETLKLREDAG
+NLTVSPNPVPVTSGEA--------TEATLSWSGLTSGTWKGLVTWDAGITTDVTVQVP

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000064.fa

@@ -0,0 +1,54 @@
+>AS2_ACLBLIBL_00088
+M-----------------------TA-ALTTRENTAPAAEPAGARIPVAELRNLRVGFDDGAGGTRAVVHGVDLRIEPGQ
+CVAIVGESGSGKSVTARTLVGLTGAGSRVSADLARLGEDDVLALDERAWRRRRGVRVGYILQDALVSLDPLRTVGAEIGD
+VLRLHGVSDRGERRRRAADLLAEVGVPEPQVRLDQRPGELSGGLRQRALIASAVALQPELVIADEPTTALDVSVQVQVLE
+LLSRL-KSSGTAVLLISHDFAVVSRLADHVLVMEGGRIVESGPVRRILDAPEHPYTRRLLAAIPSGDTRGQRLSPE----
+-PRAVV---THAPLV-AAPTAQGGPTLAARGLTKRYRGPDGR-DRTVVDDVSFDVFAGQTLGIVGESGSGKSTTAAMALG
+LVQPDAGTVELDGRPWSGVSARARRARRRQVAVVYQDPLSSFDPRWNGERILADAAGAGVPPWASPARRRAARDDARARA
+VDLARLVGLDPRHLTRSPARLSGGQRQRLAITRALAVQPRVLVLDEAVSALDVSVQAQVLDLLGDLKEGLGL-TSLFISH
+DLGVIHHVSDRILVMKDGRAVEQGDADQVFHAPRHEYTRGLLASL--EQLSIR-------------------------
+>AS2_ACLBLIBL_00265
+MD-PKHDDGALGAGSHAAAPEAAPTAGTDPAGVGSAE-MPAPGA--PLLEIRDLDVEFR-TQQGTVKAVEGASLTLPAGG
+TLAIVGESGSGKSTTAMAAIGLLPGNGRVTGGSVKFAGEELVGLSDAKMRRIRGRRIGLVPQDPMSNLNPVTRVGQQIGE
+TLLTHGLATKKDVGAKVVEVMERAGIPEPARRAKQYPHELSGGLRQRVLIAIGLACRPQLLIADEPTSALDVTVQQVILD
+QIDEMTRELGSSVLLITHDLGLAADRAQQLVVMHRGRVVESGDARAILEDPQHAYTRSLVAAAPS--VAAARLLPEAFDP
+APSALKEDDTAALSTVALAKKDLTPLVEIRDLTKVYP-VRGHDDFTAAKDVSLKIPRGKTVSIVGESGSGKTTTARMLLK
+LIEPTSGEITFEGKDVLGMKGEDLKDFRQRVQAVFQDPFSSLNPSFTVGRIIEEPL---------QTYKRGNAKERRARV
+LELMEQVALPSHFHRRYPAELSGGQRQRVAIARALALNPELIVCDEPVSALDVLVQDQILTLLRRLQDELGL-SYLFISH
+DLAVVRLISDYVCVMKDGEVVEAASSEEVFTNPRHPYTRRLLASIPGNELGIAVEADGEHV-----------------
+>KBS0714_MOLHKGIG_00119
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------------------------------------------------------------------------MLLK
+LIEPTSGEISFEGRDVLALKGEGLKDFRQRVQAVFQDPFSSLNPSFTVGRIIEEPL---------QTYRRGNATQRRARV
+LELMDQVALPSHFHRRYPAELSGGQRQRVAIARALALNPELIVCDEPVSALDVLVQDQILTLLRRLQDELGLRSYLFISH
+DLAVVRLISDYVCVMKDGRVVEAASSEEVFTNPRHPYTRRLLASIPGNELGIAVEADGTHV-----------------
+>KD337_NAFOICDF_00137
+MSIPK-----------------SPTS-TLPSAVAPA----------PALSVHGLDVDYA-GRHGQAPALRDVRLEVPAGG
+TLAVVGESGSGKSTLARVLLGLSAANARIRSGRIHVAGQTVDAADTDALARLRGRCIGFVPQDPVTGLNPVRTIGEQVVA
+AVRTHTRLRVDDAYGRAEALLAEAGVDRPGHRLGQFPHELSGGLRQRVLIALALAGDPEVIVADEPTSALDATVQQQVLD
+RLGLLQERTGAALVLITHDLAVAAGRAERIVVMRQGRIVEAGPAEQIAQSPQDSFTRRLVAASPG-----RR--------
+-PTARV---LAAPDVEAGPGADPAPVVRVRGLRHEYPGVHGSAPHVAVDGVDLDIRAGETLALIGESGSGKTTTGRLVLG
+LETVREGSVQIRGVETAGVGGRAWRRARRHLQTVHQNPFASLDPRQTVERIVAEPL---------RAFSVGSRTERRDRV
+TELLERVSLPAATASRRPGELSGGQRQRVAIARALALDPDVLVCDEPTSALDVSVQAQVLELLARLQDEQGL-ACLFITH
+DLRVVWDIAHRVAVMRDGRILETAATERLFRAPEHPYTAELLAAA-----GVTAPLTGTQTSAGTMTPAGARALVGRP
+>SA211_MHAAABBN_02135
+MD-PKHDDGAPG-------PGAAPA-------------VPAAGA--PLLEIRDLDVEFT-TQQGTVQAVEGASLTLPAGG
+TLAIVGESGSGKSTTAMAAIGLLPGNGRVTAGSVRFAGEELVGLPESRMRRIRGRRIGLVPQDPMSNLNPVTRVGQQIGE
+TLLTHGMATKKDVGAAVVEVMERAGIPEPARRAKQYPHELSGGLRQRVLIAIGLACRPQLLIADEPTSALDVTVQQVILD
+QIGEMTRELGSSVLLITHDLGLAAERAQQLVVMHRGRVVESGDARAILEDPQHAYTRSLVAAAPS--VAAARLLPEAFDP
+APVALAEDDTAALTTVALAKQDLTPLVEIRDLTKVYP-VRGHEDFIAVKDVSLKIPRGKTVSIVGESGSGKTTTARMLLK
+LIEPTSGEITFEGRDVLALKGEGLKDFRQRVQAVFQDPFSSLNPSFTVGRIIEEPL---------QTYRRGNATQRRARV
+LELMDQVALPSHFHRRYPAELSGGQRQRVAIARALALNPELIVCDEPVSALDVLVQDQILTLLRRLQDELGL-SYLFISH
+DLAVVRLISDYVCVMKDGEVVEAASSEEVFTNPRHPYTRRLLASIPGNELGIAVEADGTHV-----------------
+>TT9_LFPAFLNI_00127
+MD-PKHDDGAPG-------PGAAPA-------------VPAAGA--PLLEIRDLDVEFT-TQQGTVQAVEGASLTLPAGG
+TLAIVGESGSGKSTTAMAAIGLLPGNGRVTAGSVRFAGEELVGLPESRMRRIRGRRIGLVPQDPMSNLNPVTRVGQQIGE
+TLLTHGMATKKDVGAAVVEVMERAGIPEPARRAKQYPHELSGGLRQRVLIAIGLACRPQLLIADEPTSALDVTVQQVILD
+QIGEMTRELGSSVLLITHDLGLAAERAQQLVVMHRGRVVESGDARAILEDPQHAYTRSLVAAAPS--VAAARLLPEAFDP
+APVALAEDDTAALTTVALAKQDLTPLVEIRDLTKVYP-VRGHEDFIAVKDVSLKIPRGKTVSIVGESGSGKTTTARMLLK
+LIEPTSGEITFEGRDVLALKGEGLKDFRQRVQAVFQDPFSSLNPSFTVGRIIEEPL---------QTYRRGNATQRRARV
+LELMDQVALPSHFHRRYPAELSGGQRQRVAIARALALNPELIVCDEPVSALDVLVQDQILTLLRRLQDELGL-SYLFISH
+DLAVVRLISDYVCVMKDGEVVEAASSEEVFTNPRHPYTRRLLASIPGNELGIAVEADGTHV-----------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000065.fa

@@ -0,0 +1,48 @@
+>AS2_ACLBLIBL_00092
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------MDLTYKLWEGSWDEGAVLQDKGGSRHADPEKVHKIHHVSERYRVEGPHLPAPSP-QRTPVLF
+QAGSSGPGRAFAARNAEAVFLIAPSVEAARQQIEDPRRQAVEFGRRPEDIKFFQGLSFVIGDTEEEAQAKLEEYERYVSV
+DGYLA-HAALV---DPDGRVYPPDTPLRELETNTQ-KGFAESLQKAITDREPVVADVA--------------WRSHRDSR
+VVGTPEQIADELQRWQ-DAGVDGVNVINWVIPGSFEEFIEKVLPVLRERSLAQSDYG--EGTLRHRLFGEGDRLPDRHPA
+AKYRGAFTGTPRSQRAPRTEPQGADPAPAA
+>AS2_ACLBLIBL_00093
+MT---------KTARRRPLHLNAFAMNTTSHIHHGQWRRPDARQHEFADLRTWTELARTLEDAAFDAMFFADVVGHYGDA
+DADYAVYVEEGLQIPSNDPTVLLGALAAVTERIGLATTSNVFQAHPFQFARQLSTLDHLSRGRIAWNIVTGT--------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
+>AS2_ACLBLIBL_00195
+-------------------------MMTPVHQSPGLWRHPESRIAEFDRLAYWTGLARTVEDGGFSALFLADVLGLYDVY
+GGGIEATVRGGVQWPVLDPAVAVPAMAAATERIGFGVTASVTYERPYLLARTLATLDHFTGGRVAWNIVTSYQDSAARNL
+GLDRQIPHDARYDLADEALDALYRLWEGSVEPGAVAFDRAAGVVADPDRVHPAAVAGAHVRVPDAALTHPGP-QGTPYLF
+QAGASARGRRFALDHAEAVFAIGPTPAHVRRFVDQTRAGLTEAGRSADAIRVLAMVTVVVAETDEAAAQRLAGYAEHVDV
+AGALALWGGWT---GVDVAGLDPDAPLEHVVTDAN-RSALAAFTEDPSGRTWTLRDVAEF-----------VAIGGRGPV
+IVGSPETVADELQRWQAETGVDGFNVSAAVRPADLERFAALVSPELRRRGVLREPEP--GRTLRENLSGAGPALPADHRG
+HAFRTA-----------------------G
+>KD337_NAFOICDF_00133
+MTGTHPSTPRPRTADRQLILGAHF----PGVNNTTVWSDPESGSQIAPE--SFIRFAEIAERGRLDFIFLAEGLRLREQR
+GLLHDLDVVGR---PATLP--ILAALAAATEHIGLIGTLSTTYNEPYELARQLAGLDALSGGRAGWNVVTSPDAFTGENF
+RRGGYLPRERRYQHAGEFLATAQQIWDAA---------SGRPPHVDVD--------VEDFSVHGT-VDAPAPVHGRPVIL
+QAGDSDEGRDLAAREADAVFTRHGDWEAGQEFTADMRRRAAAAGRPDGAVRVLPGVTVVVGDTDEEAAAEAEQIRR-AQV
+SGATA-VLTLERIWNRDLSGWDPDGPLPDVEPVLEDTGLSQGRVRHVADPHAEVARLREISQRQGLTLRETVIATGQRQD
+FVGSPETVAQELIRHVEHDVCDGFILIPHLTPGGLEPFVDRVVPLLQERGALRTDYPEDGGGLRGLLGAA--VHPTAGRA
+S-----------------------------
+>KD337_NAFOICDF_00146
+MT---------ATPAPAPFILSAFDMVTPVHQSPGLWRHPESRAHEFDRLSFWTDLARTVEEGGFTAVFLADILGLYDVH
+GGGVDATVRGGVQWPLLDPFTVVSAMAAVTERVGFGVTASVTYEQPYLLARTLTSLDHFTGGRIAWNVVTGYQDSAARNL
+GLDRQPGHDERYDRADAYLDAMYRQFEGSVERDAVVADRESGVFADPAKVHPIDVEGPHVRLPGVALAHPGP-QGTPFLF
+QAGASSRGRRFALEHAEAVFYIGPTTAHVRRFVEQTREGLREAGRPEDAIRVLAMVTVVVADTDEEAQARLASYHEHVDV
+ESALALFGGWT---GVDLSGLDPDAELEHVESEAS-RTALAAFTTQSPDRRWTVREVAEF-----------VSVGGRGPV
+IVGSPATVADELERWHRETGVDGFNISAAVRPTDLERFARLVSPELRRRGVLREPEA--GRTLRENVAGAGPLLPEDHRG
+AGFRR-------------------------
+>TT9_LFPAFLNI_00201
+MT---------AT--PAPFILSAFDMVTPVHQSPGLWRHPESRAHEFDRLSFWTDLARTVEEGGFTAVFLADILGLYDVH
+GSGVDATVRGGVQWPLLDPFTVVSAMAAVTERVGFGVTASVTYEQPYLLARTLTSLDHFTEGRIAWNVVTGYQDSAARNL
+GLDRQPGHDERYDRADAYLDAMYRQFEGSVERDAVVADRESGVFADPAKVHPIGVEGPHVRLPGVALAHPGP-QGTPFLF
+QAGASSRGRRFALEHAEAVFYIGPTTAHVRRFVEQTREGLREAGRPEDAIRVLAMVTVVVADTDEEAQARLAEYHEHVDV
+ESALALFGGWT---GVDLSGLDPDAELEHVESEAS-RTALAAFTTQSPDRRWTVREVAEF-----------VSVGGRGPV
+IVGSPATVADELERWHRETGVDGFNISAAVRPTDLERFARLVSPELRRRGLLREPEA--GRTLRENVAGGGPLLPEDHRG
+ARFR--------------------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000069.fa

@@ -0,0 +1,61 @@
+>AS2_ACLBLIBL_00135
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTQSMDQHGVLERTARVEAELFGSLAATGIG
+HGSDTAVLLGLAGQDPETIDPDACVGLVDEILQGGRMPL-----DGRHEIAFDRQKDMTL
+HMRRTLPGHPNGMRLTAFDADGEQLHTRDYYSVGGGFVVTSDELEAELDESRDVSRHDDG
+EGGEPYPFATGAELAGRCRTNGLSIAELMLANEATRHDLGELRTQLLAIWDVMQECVHNG
+VTRTEPILPGGLKVRRRAPALRAHLLET-T--------D--RTDPMWAMEWVNLFALAVN
+EENASGGRIVTAPTNGAAGIIPAVLHYYMRFVLPQDATQQERDDKVVEFLLTAAAIGILY
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGG
+LAVNVIEC
+>KBS0714_MOLHKGIG_00236
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG
+HGSDTAVLLGLAGQDPETIDPDACTGLVAEIVTGGRLPL-----DGRHEIAFDRQADLTL
+HMRESLPGHPNGMRLTAYDDAGEQLHTRDYYSVGGGFVVTSDELEAELDATKDVNRTDDG
+DTGEPYPFSTGAELAARCREAGLSIAELMLANEATRHDLDELRTQLLAIWAVMEECVHNG
+VTRTEPILPGGLQVRRRAPALREHLLQT-T--------D--RTDPMWAMEWVNLFALAVN
+EENASGGRIVTAPTNGAAGIIPAVMLYYMRFVLPEGATQQERDDKVVEFLLTAAAIGILY
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALLGDGSHRVTLDQAITTMRDTGADMKSKYKETSRGG
+LAVNVIEC
+>KD337_NAFOICDF_00100
+MALSILDLFSIGIGPSSSHTVGPMRAARRFTYALERDGLVERTARVKGELFGSLSATGVG
+HGSDMAVILGLCGNDPETIDPEAAAPQVQACVEGGTLPL-----DGTHEIPFDRPKDLVL
+HMRRSLPGHPNGMRLTAFDADGAELLTRDYYSVGGGFVVTGEELEAELDETRDVSRH--G
+EEPEPHPFSTGADLIAQCEIHGLSIADVVRANEAARGDLADVEAKVLEIWDVMQECVAHG
+IHRTEPILPGGLKVKRRAPGLHAQLLEKGT--------DGAEKDPMWAMEWVNLFALAVN
+EENASFGRIVTAPTNGAAGIIPAVLHYYDRFVLPPGTPAEERRAKILDFLFTAAAIGILF
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTPLQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALVGDGDHRVTLDQAIQTMRETGADMKSKYKETSRGG
+LAVNVIEC
+>SA211_MHAAABBN_00102
+MALSVVDLFSVGIGPSSSHTVGPMRAGRRFALGLVERGLVDATERIHVQLFGSLSATGHG
+HGSDRAVLLGLEGEDPETVDTDRANARVESMKAERRLALAAGAEQGGKDLDFDPDADLVM
+HRRRSLPYHPNGMSFTAYDGSGEVVVERVYYSVGGGFVVD--------DEAAGADRVVED
+ATEPPLPFSSGRELLNHCDREGISIPELMRRNEEAFRPWEAARAALLNTWRVMQECVEAG
+CEATG-TLPGGLKVPRRAALLKEQLEVSAPRDGSAPPRDGGAPDALGAMEWVNLYALAVN
+EQNASGGRIVTAPTNGAAGIIPAVLHYWRDFLARE-MTAEHIEDGVVDFLLTAAAIGILI
+KENASISGAEMGCQGEVGSACSMAAAGLCQLLGGTPQQVENAAEVGIEHNLGLTCDPVGG
+LVQIPCIERNAIASVKAINAARLCRRGDGRHTVSLDQAIKTMRETGQDMKVKYKETSRGG
+LAVNVIEC
+>SA211_MHAAABBN_02249
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG
+HGSDTAVLLGLAGQDPETIDPDACTGLVEEIVTGGRLPL-----DGRHEIAFDRQGDLTL
+HMRESLPGHPNGMRLTAYDDAGEQLHTRDYYSVGGGFVVTSDELEAELDATKDVNRTDDG
+DTGEPYPFSTGAELAARCHEAGLSIAELMLANEATRHDLDELRTRLLAIWAVMEECVHNG
+VSRTEPILPGGLQVRRRAPALREHLLQT-T--------D--RTDPMWAMEWVNLFALAVN
+EENASGGRIVTAPTNGAAGIIPAVMLYYMRFVLPEGATQQERDDKVVEFLLTAAAIGILY
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGG
+LAVNVIEC
+>TT9_LFPAFLNI_00237
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG
+HGSDTAVLLGLAGQDPETIDPDACTGLVEEIVTGGRLPL-----DGRHEIAFDRQGDLTL
+HMRESLPGHPNGMRLTAYDDAGEQLHTRDYYSVGGGFVVTSDELEAELDATKDVNRTDDG
+DTGEPYPFSTGAELAARCHEAGLSIAELMLANEATRHDLDELRTRLLAIWAVMEECVHNG
+VTRTEPILPGGLQVRRRAPALREHLLQT-T--------D--RTDPMWAMEWVNLFALAVN
+EENASGGRIVTAPTNGAAGIIPAVMLYYMRFVLPKGATQQERDDKVVEFLLTAAAIGILY
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGG
+LAVNVIEC
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000070.fa

@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00157
+------------------------MAHGLARSFGDVHAVRDVSLTVPSGSVTALVGPNGS
+GKTTLMLLLATLLRPDAGAVTIGGVDAVREPQEARRRLGWMPDTLGVWESLTCRDILTSL
+GRLYGMGAAEAAARAGEQLERVALTEFADRPARVLSRGQQQRLSLARATVHRPGVLLLDE
+PANGLDPAARIRLRDDVRAMAAEGTAILVSSHVLAELEEMSDRAVFVREGATLSTQEFRE
+DA--AQTRPYRIAGPASA-RPDVLVRALEARGLAVEPA--AAHGQPRAGVVVGLRGET--
+AAAELLADLVREGVPVSHFAPEGSRLENAYLGLHLDRDTAEGDRP---------------
+>AS2_ACLBLIBL_00588
+M----------------------ITVNEVSKSFGSTPVLQDLTFSIRPGLMTGFVGGNGA
+GKTTTMRILLGVLDADSGRIEVDGAPITRD---YRAGIGYMPEERGLYPKMSVLDQLVYL
+GRLHHMRGADAKARALELLERLNLGDRAGSRLEELSLGNQQRAQIAAALVHDPVALVLDE
+PFSGLDPNAVETTLQVLRETADTGVPVLFSSHQLDLVERLCDELVILAGGRVRAS-----
+----GTRDELLAAHADPEWELHADADTGWVRGLPGIEVL------HFDGGRARFRADTPQ
+AAQRVLADAAARG-PVHRFGPVTRSLHEIFTEVT------------------------R-
+>KBS0714_MOLHKGIG_00223
+MTA---PAPPPASPVLGVAAHDGIVAHGLARSFGAVHAVRDVSLTVPAGSVTALVGPNGS
+GKTTLLLILATLLRPDAGAVSVAGVDAVREPVEARRRLGWMPDTLGVWEELTCHDILASL
+GRLYGMGKAEASARADEQLAWVELTEFAHRPARVLSRGQQQRLSLARATVHRPSVLLLDE
+PANGLDPAARIRLRDDLRAMAAAGTAVLVSSHVLAELEEMSDRAVFLREGATVATQEFRA
+AD--DLARPYRIAGPDPT-ARDTLIRALETRGLTVTAATGAGAGQRRDGVVVQLRGEA--
+AAAALLADLVREGVLVSHFAPEGSRLENAYLGLHLEGPRTEGDRP---------------
+>KD337_NAFOICDF_00115
+MTSSVLPQPP-----------SGIVAHGLARSFGSVHAVRDVSLTAPAGSVTALVGPNGS
+GKTTLMLLLATLLRPDRGSVSVAGVDAMADPGQARRLLGWMPDTLGVWDSLTCADILTSL
+GRLYGMGQAEAATRAREQLAWVQLEPFADRPARVLSRGQQQRLSLARATVHRPAVLMLDE
+PANGLDPTSRIRLRDDVRAMAAAGVAVLVSSHVLAELEEMADRAVFVSEGATVAVRDLSG
+ADDAGRERPYRIAGPDPS-RRDELVRALQARGVPLAAPLEG----HRPGVVVRLRGED--
+AAAALLADLVAAGVPVSRLAPEGSRLENAYLDLALGGPAPHAAGPVTAAGPAPTVEGGRA
+>SA211_MHAAABBN_02236
+MTA---PAPPPASPVLGVAAHDGIVAHGLARSFGAVHAVRDVSLTVPAGSVTALVGPNGS
+GKTTLLLILATLLRPDAGAVSVAGVDAVREPVEARRRLGWMPDTLGVWEELTCHDILASL
+GRLYGMGKAEASARADEQLAWVELTEFAHRPARVLSRGQQQRLSLARATVHRPSVLLLDE
+PANGLDPAARIRLRDDLRAMAAAGTAVLVSSHVLAELEEMSDRAVFLREGATVATQEFRA
+AD--DLARPYRIAGPDPT-ARDTLIRALETRGLTVTAATGAGAGQRRDGVVVQLRGEA--
+AAAALLADLVREGVLVSHFAPEGSRLENAYLGLHLEGPRTEGDRP---------------
+>TT9_LFPAFLNI_00224
+MTA---PAPPPASPVLGAAAHDGIVAHGLARSFGAVHAVRDVSLTVPAGSVTALVGPNGS
+GKTTLLLILATLLRPDAGAVSVAGVDAVREPVEARRRLGWMPDTLGVWEELTCHDILASL
+GRLYGMGKAEASARADEQLAWVELTEFAHRPARVLSRGQQQRLSLARATVHRPSVLLLDE
+PANGLDPAARIRLRDDLRAMAAAGTAVLVSSHVLAELEEMSDRAVFLREGATVATQEFRA
+AD--GLARPYRIAGPDPT-ARDTLVRALETRGLTVTAATGAGAGQRRDGVVVQLRGEA--
+AAAALLADLVREGVLVSHFAPEGSRLENAYLGLHLEGPRTEGDRP---------------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000071.fa

@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00162
+MVGLLGPTAGGLLLGVVGVLAAASVIAAVLRARMGARNPELIG------NLVQRIGAWWA
+MVAVLAAVL--ALGETATLLLFLVLTWLSLREFLTISPTGRADHRTLVWLFFVVTPLHYW
+FVWEHWYGMFSVFIPVYAFLFLPVRAALAGRTEGFLRRAAAVQWAAMVCVYAVSHIPAVL
+QLPVAMEHGRHMAEGSAPGSGDEAGALLLLFLLLVVQGSDVFQYVWGKTLGRRPIAPSVS
+PNKTWEGFVGGVLTATALG-AALSFLTPFPWWVAALFAFVSCLLGFGGGLVMSAIKRDRG
+IKDFGSLIPGHGGIMDRIDSLVFAAPVFFHLVRFFYA
+>AS2_ACLBLIBL_02307
+MT------------------TAVST-PAPPRGGRDLKSAVLVGVGLLVLALVGLVWLDWL
+LVLLVVALLVGAVTEVAT----------------AVRGIGLQVPRPPLWAAAVALPVSAW
+L-----WGVPALFVALAACL------ALLAVWTALTRHRPTGQF-MLAGVFIVLWAPFLL
+SFAVAM-------------LDQPRGNLLVAITLLMVVSNDTFGYIVGYRFGRTPIAPRIS
+PKKSWEGLAGSLAGSALVGVVTVPLFVGQPWWVGAILAVTTVAAATSGDFSESMVKRELG
+IKDMSSALPGHGGVMDRLDSLVFAAPVAYTVLALPLT
+>KBS0714_MOLHKGIG_00656
+MT------------------SAVSTSPAPPRGGRDLKSAVLVGVGLLATALVGLFWLDWL
+LVLLVVALLVGAVSEIAT----------------AVRGIGLDVPRPPLWVAAAVLPLTAW
+R-----WGVPALFIALVACL------ALVAVWTALTRRRPAGQF-MLAGVFIVLWAPFLL
+SFAAAL-------------LDEPLGHRMVAVLLLMVVSNDTFGYIVGYRFGRTPIAPRIS
+PKKSWEGLAGSLAGSVLVGVVAVPLLVGQPWWVGAVLGVTTVAAATSGDFSESMVKRELG
+IKDMSSALPGHGGVMDRLDSLVFAAPVAYTVLALPLT
+>KD337_NAFOICDF_02164
+MT------------------PDATA-PSPPRGGRDLRSAVLVGVGLLGTALVGLVWLPWL
+LVLLVVSLLVGAVNEVAV----------------AIRQIGLDVPRPPLWVGATVMPLAAW
+T-----GGIPALFLALMASL------VLMFAWTAVTRRRPTGQF-MLAGTFVLLWAPFLL
+SFAAAL-------------LDQPAGHMMVVCLVLMVVSNDTFGYMVGYRWGRTPIAPRIS
+PKKSWEGALGSLAGSVAVGSVLVPVLVGHPWWAGALLGALTVGAATAGDFSESMVKRELG
+IKDMSSALPGHGGIMDRLDSLVFAAPVAYAVLALPLS
+>SA211_MHAAABBN_00393
+MT------------------SAVSTSPAPPRGGRDLKSAVLVGVGLLATALVGLFWLDWL
+LVLLVVALLVGAVSEIAT----------------AVRGIGLDVPRPPLWVAAAVLPLTAW
+R-----WGVPALFIALVACL------ALVAVWTALTRRRPAGQF-MLAGVFIVLWAPFLL
+SFAAAL-------------LDEPLGHRMVAILLLMVVSNDTFGYIVGYRFGRTPIAPRIS
+PKKSWEGLAGSLAGSVLVGVVAVPLLVGQPWWVGAVLGVTTVAAATSGDFSESMVKRELG
+IKDMSSALPGHGGVMDRLDSLVFAAPVAYTVLALPLT
+>TT9_LFPAFLNI_00626
+MT------------------SAVSTSPAPPRGGRDLKSAVLVGVGLLATALVGLFWLDWL
+LVLLVVALLVGAVSEIAT----------------VVRGIGLDVPRPPLWVAAAVLPLTAW
+R-----WGVPALFIALVACL------ALVAVWTALTRRRPAGQF-MLAGVFIVLWAPFLL
+SFAAAL-------------LDEPLGHRMVAVLLLMVVSNDTFGYIVGYRFGRTPIAPRIS
+PKKSWEGLAGSLAGSVLVGVVAVPLLVGQPWWVGAVLGVTTVAAATSGDFSESMVKRELG
+IKDMSSALPGHGGVMDRLDSLVFAAPVAYTVLALPLT
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000074.fa

@@ -0,0 +1,48 @@
+>AS2_ACLBLIBL_00184
+MAEHPAARPEQDATTSTSAATSTSPASRAGRELLFNAFDMNCVAHQSPGLWRHPEDRARDYNTLGYWTHLAQTLEKGLFD
+GLFIADVLGPYSVYGGTAEAAIRSGAQTPVNDPFLLVSAMAAVTGHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVRYDKETGVFADPAKVHDIGH
+EGRYFKVPGAAVT-EPSPQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELT
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSAVEAFQKASGTDEEWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGYNLAYHITPGTFEDV
+VEFVVPELQKLGRYKTAYTDGTLRHKLFGRGDHLPEGHHGASFALRRR-G
+>KBS0714_MOLHKGIG_00207
+M------------STAENAGAGAPTRPDEHRAILFNAFDMNCVAHQSPGLWRHPDDHARDYNTLGYWTHLAQTLEKGLFD
+GLFIADVLGPYSVYGGTSEAAIRTGAQTPVNDPFLLVSAMAAVTEHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVVYDKESGVFADPAKVHDIAH
+EGRYFTVPGHAVT-EPSVQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELA
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSAVETFQKASGTDEEWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGFNLAYHITPGAFEDV
+VEFVVPALQKLGRYKTAYTDGTLRHKLFGRGDHLPQNHHGASFALRRR--
+>KD337_NAFOICDF_00130
+M------------STAENAGAGAPTRPDEHREILFNAFDMNCVAHQSPGLWRHPDDHARDYNTLGYWTRLAQTLEKGLFD
+GLFIADVLGPYSVYGGTSEAAIRTGAQTPVNDPFLLVSAMAAVTEHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVVYDKESGVFADPAKVHDIAH
+EGTWFKVPGHAVT-EPSVQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELA
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSAVETFQKASGTDEGWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGFNLAYHITPGTFEDI
+VEFVVPELQKLGRYKTAYTDGTLRHKLFGRGDHLPQNHHGASFAFRNRRG
+>KD337_NAFOICDF_00132
+M------------STPTPTLGIA-------------------LTTQTPA------------DARGHWTRLSQALEETSLD
+WAVLTDPLGTAPQAG------------THRIDAVLAACWTATRTHRIGLVPEVTTTHTEPFHVSIGLATLDHVSHGRAGW
+LATVSAAPEVSALFGRRRHPAERTPGLQASRVDLELWEELQDAVAAVRDLWE-SWEPDAEIRDIATGRFIDRERVHHVDV
+EAERFSVRGPSITPRPPQGRLPVLVEA-AGPAGLEAARRTADVVLLPAAEVGRTDAARLPDRRRRGATPAVPVEPTRIVA
+DVTLEGDGARVADAVRHALQAGADGARLVPNPTADPFDALALAADVHDRLDDIRPPDTGTVPLRECLGLAPALSPWRHPE
+DPT--------------ARPTDEEATA-----------------------------------------------------
+--------------------------------------------------
+>SA211_MHAAABBN_02200
+M------------STAENAGAGAPTRPDEHRAILFNAFDMNCVAHQSPGLWRHPDDHARDYNTLGYWTHLAQTLEKGLFD
+GLFIADVLGPYSVYGGTSEAAIRTGAQTPVNDPFLLVSAMAAVTEHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVVYDKESGVFADPAKVHDIAH
+EGRYFTVPGHAVT-EPSVQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELA
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSTVETFQKASGTDEEWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGFNLAYHITPGTFEDI
+VEFVVPELQKLGRYKTAYTDGTLRHKLFGRGDHLPQNHHGASFALRRR--
+>TT9_LFPAFLNI_00207
+M------------STAENAGAGAPTRPDEHRAILFNAFDMNCVAHQSPGLWRHPDDHARDYNTLGYWTHLAQTLEKGLFD
+GLFIADVLGPYSVYGGTSEAAIRTGAQTPVNDPFLLVSAMAAVTEHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVVYDKESGVFADPAKVHDIAH
+EGRYFTVPGHAVT-EPSVQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELA
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSAVETFQKASGTDEEWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGFNLAYHITPGAFEDV
+VEFVVPALQKLGRYKTAYTDGTLRHKLFGRGDHLPQNHHGASFALRRR--

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000076.fa

@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00186
+MS--EALSRIL--QVWPEIVVALGQTLTMLAVTIPLAVLLGTPLGIWLFTHAPGGLSPSP
+RLHRVVD-AAVSMLRSFPFLILLIAIIPVTRLIVGTTIGTAAVIVPLTVNAIPYFARFVE
+QNLAQLGPGPVEAARAMGATRGQIVRDVLLVDARPALVGSLTIMSVSFISYSAMAGLVGG
+GGIGDFAIRYGYYRYETPLMVVAILLMIGLVALLQFAGTRLSQRLDHRRPRTARRPRRRA
+LAPAG
+>AS2_ACLBLIBL_01853
+MTWLETLTTNP--AITDALPEALVETLLMVAISGVATVLIGGLLGIVLHVTRPGGLNPMP
+ALYTVLSTVIVNITRSVPYAILMVALIPLTKWLVGTAIGPIAATVSLTIGTAPFFARLVE
+SALREIPSGTVDAAQVMGSTRGQVIRKVLLPEAMPGLIAATTTTLVTLVGYSAMAGLIGG
+GGLGRLAYNYGYQRFQTEVMVVTIVVIVILVQLIQWIGDLLIRRVDHR------------
+-----
+>KBS0714_MOLHKGIG_01030
+MI--DRFQNLDWGYYGPELMTAVGDTLYMVGWSFILGGILGLLVGLVLYTTRPGGIFANR
+AVYLVTN-FIVNLIRPIPFVILIAALQPLTIAVLGTGIGNTAVVFCMIWASTFGIARIVE
+QNLVSLDPGVIEAARAMGASRMRIVRAVVLPEALGPLILGFTFVIISLVDMSAMAGIIGG
+GGVGNFAIVEGYNRFRPEVTWLAVIVVIVFVQALQLIGNGIARKVMRR------------
+-----
+>KD337_NAFOICDF_01742
+MI--DRFQNLDWGYYGPELMTAVGDTLYMVGWAFILGGILGLLVGLVLYTTRPGGIFANR
+AVYLVTN-FVVNLIRPIPFVILIAALQPLTIAVLGSGIGNTAVVFCMIWASTFGIARIVE
+QNLVSLDPGVIEAARAMGASRMRIVRTVVLPEALGPLILGFTFVIISLVDMSAMAGIIGG
+GGVGNFAIVEGYNRFRPEVTWLAVIVVIVFVQALQLIGNGIARKVMRR------------
+-----
+>SA211_MHAAABBN_00745
+MI--DRFQNLDWGYYGPELMTAVGDTLYMVGWSFILGGILGLLVGLVLYTTRPGGIFANR
+AVYLVTN-FIVNLIRPIPFVILIAALQPLTIAVLGTGIGNTAVVFCMIWASTFGIARIVE
+QNLVSLDPGVIEAARAMGASRMRIVRAVVLPEALGPLILGFTFVIISLVDMSAMAGIIGG
+GGVGNFAIVEGYNRFRPEVTWLAVIVVIVFVQALQLIGNGIARKVMRR------------
+-----
+>TT9_LFPAFLNI_00974
+MI--DRFQNLDWGYYGPELMTAVGDTLYMVGWSFILGGILGLLVGLVLYTTRPGGIFANR
+AVYLVTN-FIVNLIRPIPFVILIAALQPLTIAVLGTGIGNTAVVFCMIWASTFGIARIVE
+QNLVSLDPGVIEAARAMGASRMRIVRAVVLPEALGPLILGFTFVIISLVDMSAMAGIIGG
+GGVGNFAIVEGYNRFRPEVTWLAVIVVIVFVQALQLIGNGIARKVMRR------------
+-----
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000077.fa

@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_00187
+-------------------------MISIQNVSTAF--GE-----HRAVDDVSLEIPTGS
+IQGIIGFSGAGKSTLLRNVNLLLRPSAGRVVVDGTDLTALSPSGLREARRGIGMVFQHFN
+LVHNLTAAQNVALALKFAG-VDRRARQARAHEALEIVGLADHAGRYPAELSGGQAQRVAI
+ARALSTRPSVLLCDEPTSAVDPRTTATVLQHLVDINRDLGITTVIVTHEMNVIRAVADDV
+AVMEDGRAVERFALADL-----ERADFAPRTGIGRYLLEDEIALERPPLRGAA------G
+APDG------DRAGSGTTPGTSPGTTSIPGDVREAVVAGV--------------------
+---------------------------------------
+>AS2_ACLBLIBL_01854
+M-----SSSPTVST---SAHPVGTPMIEVRGLEKTFRQGAKE---IRALRGVDLAVAPGR
+IHGIIGQSGAGKSTLVRCLTLLEPPTSGTVSVAGKDLTRESRSGLLDSRRRIGMVFQHAN
+LFSSRTARDNVAYPLEVAGGSDAAARRARADELLALVGLKGFEGSYPAQLSGGQKQRVGI
+ARALASDPDVLLCDEPTSALDPASTEGVLTLIQDLSQRLGLTVLVITHEMHVVKRLCHEV
+SLLQDGRIVQSGDLGDV------AAD-----------LDSPLSSALLPLPAPH------A
+APDQRLIEVLGRGAAASLPITQLVRDAGAGEVE--VLAGTVEDLAGERFSHQLLGLAGTW
+AAGDAAVARLQEAGLTARTLSARQASQDQHTADEIGGAR
+>KBS0714_MOLHKGIG_01029
+MAGSHTSDRDAVTPGRPSAGAPGEPVIVFDHVSRVY--AAKKGAGVKAVDDVSLAVNRGE
+VFGVIGFSGAGKSTLIRMINGLEKPTSGTVTVLGQQVSHLSEAKLRPLRTRIGMVFQQFN
+LLTSRTVAGNIEFALDTAG-WPRSKRRARVAELLEFVGLADKAKHYPEQLSGGQKQRVGI
+ARALAAEPEILLADEATSALDPSTTHEVLSVLRRVNEELGVTIVAITHEMEVIRSIADRV
+AVMDSGRVVESGKVYDLFSRPAHSAD-----------AASFVATALKDRPNAEEVARIRA
+RTEGRLIMVSLKDSAAVSAVLGTASTRGVG-FE--IVHGGMSATKDSAYGLLTVALTGEA
+AAVDAFVADLAGAG----------DVQEVHQ--------
+>KD337_NAFOICDF_01743
+MAGSHSSDRDAVTPGRHSEGAPGEPVIVFDHVSRVY--AAKKGRGVTAVDDVSLSVNRGE
+VFGVIGFSGAGKSTLIRMINGLEKPTSGTVTVLGQQVSHLSEAKLRPLRTRIGMVFQQFN
+LLTSRTVAGNIEFALDTAG-WPRSTRRARVAELLEFVGLADKAKHYPEQLSGGQKQRVGI
+ARALAAEPEILLADEATSALDPSTTHEVLSVLRRVNEELGVTIVAITHEMEVIRSIADRV
+AVMDTGRVVETGKVYDLFSRPAHSAD-----------AASFVATALKDRPNADEVARIRA
+RTEGRLIMVSLKDSAAVSAVLGTASTRGVG-FE--IVHGGMSATKDSAYGLLTVALTGEA
+AAVDAFVADLAGAG----------DVQEVHQ--------
+>SA211_MHAAABBN_00744
+MAGSHTSDRDAVTPGRPSAGAPGEPVIVFDHVSRVY--AAKKGAGVKAVDDVSLAVNRGE
+VFGVIGFSGAGKSTLIRMINGLEKPTSGTVTVLGQQVSHLSEAKLRPLRTRIGMVFQQFN
+LLTSRTVAGNIEFALDTAG-WPRSKRRARVAELLEFVGLADKAKHYPEQLSGGQKQRVGI
+ARALAAEPEILLADEATSALDPSTTHEVLSVLRRVNEELGVTIVAITHEMEVIRSIADRV
+AVMDSGRVVESGKVYDLFSRPAHSAD-----------AASFVATALKDRPNAEEVARIRA
+RTEGRLIMVSLKDSAAVSAVLGTASTRGVG-FE--IVHGGMSATKDSAYGLLTVALTGEA
+AAVDAFVADLAGAG----------DVQEVHQ--------
+>TT9_LFPAFLNI_00973
+MAGSHTSDRDAVTPGRPSAGAPGEPVIVFDHVSRVY--AAKKGAGVKAVDDVSLAVNRGE
+VFGVIGFSGAGKSTLIRMINGLEKPTSGTVTVLGQQVSHLSEAKLRPLRTRIGMVFQQFN
+LLTSRTVAGNIEFALDTAG-WPRSKRRARVAELLEFVGLADKAKHYPEQLSGGQKQRVGI
+ARALAAEPEILLADEATSALDPSTTHEVLSVLRRVNEELGVTIVAITHEMEVIRSIADRV
+AVMDSGRVVESGKVYDLFSRPAHSAD-----------AASFVATALKDRPNAEEVARIRA
+RTEGRLIMVSLKDSAAVSAVLGTASTRGVG-FE--IVHGGMSATKDSAYGLLTVALTGEA
+AAVDAFVADLAGAG----------DVQEVHQ--------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000080.fa

@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_00201
+------M-------------------------------TPGSPDD---------------
+DGAPAVRRRVLVLLNPHAGRRRSLARAQARLRTHPGLALDLVVPDPADHAAQLAAGRTAL
+ADGVDAVVVRGGDGMVAAGVGLVGDHAEATGRRVPLGIVPAGTGNDLARAAGLHRRDPGA
+ALEAVLRALEDPAAPVRRIDALRLTVTRAGAVVERRWAANSVNIGFDARVNARA-NALGA
+VPGPLRYLAALGLEARAFAAVEMGLGLDDGPVRRERVALVSVQNGPTIGGGIPLAPGARL
+DDGRAEATVVGPLPTAGLALLFPLVYVRAHRLLRPLCTERARRVRVAVPDGVPVYADGDE
+VLPASHGGAAVEVEAVPGAVALLG--------------------------
+>AS2_ACLBLIBL_00332
+------MALVALVLGAVLAVAVIVLAVRHRGLAERHERTRGQLDAVEHRLDAAQRRLGEL
+PGVDRPRQEIALVLNPVKARADEVRRTLEAMADREGLGSVLVLETEEDDPGT-QMAKDAL
+EAGVRLVIAAGGDGTVRTVA------EQLTGTDVALGVVPLGTGNLLARNLDLPINDIEE
+CLRIALTGRQ------RRIDTVDVRFTHEEGEVTRQTFTVIGGAGYDADIMADTKDELKD
+VAGWLAYSEA-GMRHLRGKRHDVSISLDGGASRRFKVRTVMVANCGMLTGGVELLPEAKL
+DDGLLDVLVLSPRHALDWARIAAKTVTRHGANIPVMHTEQAQRVKVEFADPMPSQLDGD-
+---ATGHIVALDARVQPDSLVVMLLDEKEASVHDDGRSEAAPVPEPAPHI
+>KBS0714_MOLHKGIG_00063
+MTPEWWMALAALVLLALLVVVVVVLAVRQVRLGVQHERTRLLVDALDARVGGVQRRLEEV
+PGIGTGRHEVALVLNPIKTHADRVRRELERLAEAEGLGEVLVLETQEDDPGT-AMARQAL
+DAGARLVIAAGGDGTVRTVA------EQLAGTDVALGVVPLGTGNLLARNLDLPINDVEQ
+CLRIAVGGRQ------RRIDTVDVRFTHEDGRVTRQTFTVIGGAGYDADIMGDTKDELKS
+LAGWLAYSEA-GMRHLRGKRHEVTVALDGGQPRRFKVRTVMVANCGMLTGGVELLPQAKL
+DDGLLDVMVLSPRHALDWARIAVKTVTRHRSSVPAMHTEQAQRVKVEFAEPMPSQLDGD-
+---ATGVITALDARVQPDSLVVMLVAEDDASVRDDGVSAAAPVPEPAPHI
+>KD337_NAFOICDF_00273
+------MALAALVLAALFAVAVVVLGLRLRRLDGAHERTRGQLDAVEARLGDLRRRAGRA
+PGVDLPGPQVALVLNPVKARADEVRRAMEALAEKEGLGEVLVLETTEEDPGT-AMTREAL
+TAGVRLVVAAGGDGTVRTVA------EQLAGTDVALGVMPLGTGNLLARNLDLPINDIEE
+CLRIALTGRQ------RRIDTVDVRLTHEDGARTRQTFTVIGGAGYDADIMGDTKDELKD
+MAGWLAYSEA-GMRHLRGRRHEVSITLDGGAVQRFKVRSVMVANCGMLTGGMELLPEAKL
+DDGLLDVLVLSPRHALDWVRIAAKTLTRHRASIPVMHTEQAQRVQVRFAEPMSSQLDGD-
+---ATGDITALDARIQPDSLVVMLGDEDDASVEDGGRSAEAPVPEPAPHI
+>SA211_MHAAABBN_02076
+MTPEWWMALAALVLLALLVVVVVVLAARQVRLGVQHKRMRLRVDALDARVGGVQRRLEKV
+PGIGTGRHEVALVLNPIKTNAGQVRRELERLAEAEGLGEVLVLETQEDDPGT-AMARQAL
+GAGARLVIAAGGDGTVRTVA------EQLAGTDVALGVVPLGTGNLLARNLDLPINDVEQ
+CLRIAVGGRQ------RRIDTVDVRFTHEDGRVTRQTFTVIGGAGYDADIMGDTKDELKD
+LAGWLAYSEA-GIRHLRGKRHEVTVALDGGQPRRFKVRTVMVANCGMLTGGVELLPQAKL
+DDGLLDVMVLSPRHALDWARIAVKTVTRHRSSVPAMHTEQAQRVKVEFAEPMPSQLDGD-
+---ATGVITALDARVRPDSLVVMLVAEDDASVRDDGVSAAAPVPEPAPHI
+>TT9_LFPAFLNI_00058
+------MALAALVLLAVLAVVVVVLAVRQVRLGVQHQRTRLLVDALDARVGGVQRRLEEV
+PGIGTGRHEVALVLNPIKTHADRVRRELERLAAAEGLGEVLVLETQEDDPGT-AMARQAL
+DAGARLVIAAGGDGTVRTVA------EQLAGTDVALGVVPLGTGNLLARNLDLPINDVEQ
+CLRIAVGGRQ------RRIDTVDVRFTHEDGRVTRQTFTVIGGAGYDADIMGDTKDELKD
+LAGWLAYSEA-GIRHLRGKRHEVTVALDGGQPRRFKVRTVMVANCGMLTGGVELLPQAKL
+DDGLLDVMVLSPRHALDWARIAVKTVTRSRSSIPVMHTEQAQRVKVEFAEPMPSQLDGD-
+---ATGVITALDARVQPDSLVVMLVAEDDASVRDDGVSAAAPVPQPAPRI
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000081.fa

@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00317
+MDESIDAAAREANRALLGRLPADRTLVMGILNVTPDSFSDGGEHATVRAAVEHARRMVAD
+GADIVDVGGESTRSGARAVPPAEEQARILPVIEALLAEDVVVSVDTRHTATARAALALGP
+VIVNDVSGLVHEPEMPALIAASGAPYILMHN--RGNPQTMDGLAVYEDTVPDVVCELRDV
+AGRLLAAGVEPAQLIVDPGLGF--AKAGEQNWELLRGLEWLR-AMGHPVLVAASRKRFLG
+TLLADDDGAPAPPAARDAATAAISA--LAAAQGAWGVRVH---DVRASADAVRTAAAWVG
+A----HAPGEPVSEDVLP
+>AS2_ACLBLIBL_02338
+M------------------LR-SRVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRV
+GSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGV
+GYLNDIQGF-PDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEAR
+VSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLG
+ATV----GLP----VKDLGPASLAAELHAIGNGADYVRTHAPGDLRSAITFSETLAKFRS
+RDARDRGLDHA-------
+>KBS0714_MOLHKGIG_00076
+MDESIDAAAREANRALLGRLPADRTLVMGILNVTPDSFSDGGEHATVRAAVEHARRMVAD
+GADIVDVGGESTRPGARAVPPAEEQERILPVIEALLAEDVVLSVDTRHTATARAALALGP
+VIVNDVSGLAHEPDMPALIAASGAPYILMHN--RGNPQTMDGLAVYEDTVPDVVCELRDV
+AGRFLAAGVEPAQLIVDPGLGF--AKAGEQNWELLRGLEWLR-AMGHPVLVAASRKRFLG
+TLLADDDGTPAPPAARDAATAAISA--LAAAQGAWGVRVH---DVRASADAVRTAAAWAG
+A----HAPGEPVSEDVLP
+>KD337_NAFOICDF_00258
+M---LPKPFHE--------LP-DRTLVMGILNVTPDSFSDGGAHDRVDAAVAHGLDLLAQ
+GADLIDVGGESTRTGATPVDPAEEQRRILPVVEALLAEGAVLSIDTMHTATARACLALGP
+VIVNDVSGLVHEPDMPALVAESGAPCILMHN--RGHAQVMDSLAHYEDTLGEVVRELSEV
+TDRFLAAGASPEQIILDPGLGF--AKAGEQNWELLRGLERIE-SLGRPVLVAASRKRFLG
+TVLAGEDGTPRPALDRDHATAAVSA--ISAAHGAWGVRVH---DVRSSVDAVRVGDAWRG
+AAPRPAGPGEARA-----
+>SA211_MHAAABBN_02089
+MDESIDAAAREANRALLGRLPAGRTLVMGILNVTPDSFSDGGEHATVRAAVEHARRMVAD
+GADIVDVGGESTRPGARAVPPAEEQERILPVIEALLAEDVVLSVDTRHTATARAALALGP
+VIVNDVSGLAHEPDMPALIAASGAPYILMHN--RGNPQTMDGLAVYEDTVPDVVCELRDV
+AGRFLAAGVEPAQLIVDPGLGF--AKAGEQNWELLRGLEWLR-AMGHPVLVAASRKRFLG
+TLLADDDGTPAPPAARDAATAAISA--LAAAQGAWGVRVH---DVRASADAVRAAAAWVG
+A----HAPGEPVSEDVLP
+>TT9_LFPAFLNI_00070
+MDESIDAAAREANRALLGRLPADRTLVMGILNVTPDSFSDGGEHATVRAAVEHARRMVAD
+GADIVDVGGESTRPGARAVPPAEEQERILPVIEALLAEDVVLSVDTRHTATARAALALGP
+VIVNDVSGLAHEPDMPALIAASGAPYILMHN--RGNPQTMDGLAVYEDTVPDVVCELRDV
+AGRFLAAGVEPAQLIVDPGLGF--AKAGEQNWELLRGLEWLR-AMGHPVLVAASRKRFLG
+TLLADDDGTPAPPAARDAATAAISA--LAAAQGAWGVRVH---DVRASADAVRTAAAWAG
+A----HAPGEPVSEDVLP
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000082.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00326
+MPHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDAMV
+LLPGFDLVPGCVVEARPVGVFNMTDDGGGDAKLLCVPA-DKRFDHITELEHIEESLKQEI
+EHFFTRYKDLEPGKWVKAEGWQGRADAEAELEASIARFDAAGEHSPTDEPQGRDVETEDP
+SPATEEGEEKDVPQGR
+>KBS0714_MOLHKGIG_00068
+MAHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDALV
+YLPGFDLVPGCVVEARPIGVFNMTDDGGGDAKLLCVPA-DKRYDHITELEHVEESLKQEI
+EHFFTRYKDLEPGKWVKAEGWEGRAAAEAELEASIQRFDAEGEESPTDEPQGRAVDTEEA
+QPATEEGEATDEPQGR
+>KD337_NAFOICDF_00266
+MAHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDALV
+FLPGFDLVPGCIVEARPVGVFNMTDDGGGDAKLLCVPA-DKRFDHIQELEDVEESLKQEI
+EHFFTRYKDLEPGKWVKADGWEGREAAEKELEASIERFAAEGEHSPSDEPQGRDVDTEEA
+APAAEQEA--------
+>KD337_NAFOICDF_00684
+MLFDVTIEIPRGSGNKYEVDHTTGRIRLDRAVFTSMVFPQDYGSIDNTLGDDGDPLDALV
+LLPR-PTFPGVVITVRPVGMLRMVDENGGDDKILTVPAGDDRFAQLRDITDVPEHTLAEI
+EHFFAHYKEIEHGKHVTTNGWADRAAAEAVIRTA--------QNAHTRHP----------
+----------------
+>SA211_MHAAABBN_02081
+MAHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDALV
+YLPGFDLVPGCVVEARPVGVFNMTDDGGGDAKLLCVPA-DKRYDHITELEHVEESLKQEI
+EHFFTRYKDLEPGKWVKAEGWEGRAAAEAELEASIQRFNAEGEESPTDEPQGRAVDTEEA
+QPATEEGEATDEPQGR
+>TT9_LFPAFLNI_00062
+MAHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDALV
+YLPGFDLVPGCVVEARPIGVFNMTDDGGGDAKLLCVPA-DKRYDHITELEHVEESLKQEI
+EHFFTRYKDLEPGKWVKAEGWEGRAAAEAELEASIQRFDAQGEESPTDEPQGRDVDTEEA
+QPATEEGE----PQGR
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000083.fa

@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00331
+MP----------------------------------------------------------
+------------------------------------HQLDNADYGSCLNQDESFCPDGE-
+-WVQARTVDITRPDADPLYGRPTCTSDVAAGAGGAR----SFTLEEVRTLLLLDPTIESD
+NAGRGVRNAETNFYTDAGVETLSTTINGVPVELRATPVSFHWNYGDGTAPRVTHVGGHAQ
+AEFNTPTPTSHVYEETGEYTVTLTTVYIGEYREADGDWVLIPGTITLDAAPVTADIWRTV
+TRNVAEDCAADPSAWGCTGPIEAPDAP
+>AS2_ACLBLIBL_00544
+MP----------------------------------------------------------
+------------------------------------HQLDNADYGSCLNQDESFCPDGE-
+-WVQARTVDITRPDADPLYGRPTCTSDAAAGADGAR----SFTLEEVRTLLLLDPTIESD
+NAGRGVRNAETNFYTDAGVETLSTTINGVPVELRATPVSFHWNYGDGTAPRVTHVGGHAQ
+AEFNTPTPTSHVYKETGEYTVTLTTVYIGEYREADGDWVLIPGTITLDAAPVTADIWRTV
+TRNVAEDCAADPSAWGCTGPIEAPDAP
+>KBS0714_MOLHKGIG_01042
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------------MLEPEIRSD
+NGGRGIRNAETNFYADAETRTLVTTLNGVEVELRATPVSFHWDYGDGSPTKTTSVAGQSQ
+PEFNVPTPTSHVYEDTGQYTVRLTTVYIGEYREAGGEWVLIPGTISLDSAPVTANIWRTI
+TRNVADDCSVDSSAWGCTGPIESAPAG
+>KD337_NAFOICDF_01735
+MTSRRGDFPACMAVLFALIFLVSAVTLVTPSQAHASSCDTAGRKAQLTDDSLIVGQRCHK
+SSIAEIVGDGLADDQEKSAKATSPTTKVTTLQNACYENLPEPGFENCATQQELICGDQNV
+AWLQPSTKDTARPEDAPVKGDAFCADGSAAPSAPPQPSRPAVSIDDMGEVIAPEPRILAD
+TDGRGVRNAETNFYSPEAVRHETAVIDGVSVEMRLTPVSFIWDYGDGTAPVTTDVGGNPQ
+DGFDVRTPTSHVYDETGTYEVTLTTVYTGEIRYPGQGWEAVPGTIRRTATPVTADIWTTS
+TRNVADDCSADASAWGCAGPVEAPNGG
+>SA211_MHAAABBN_00755
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------------MLKPEIRSD
+NGGRGIRNAETNFYADAETRTLVTTLNGVEVELRATPVSFRWDYGDGSPTKTTSVAGQSQ
+PEFNVPTPTSHVYEDTGQYTVRLTTVYIGEYREAGGEWVLIPGTISLDSAPVTADIWRTI
+TRNVADDCSVDSSAWGCTGPIESTPAG
+>TT9_LFPAFLNI_00983
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------MSIDEVRTLLVLEPEIRSD
+NGGRGIRNAETNFYADAETRTLVTTLNGVEVELRATPVSFHWDYGDGSPTKTTSVAGQSQ
+PEFNVPTPTSHVYEDTGQYTVRLTTVYIGEYREAGGEWVLIPGTISLDSAPVTANIWRTI
+TRNVADDCSVDSSAWGCTGPIESAPAG
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000087.fa

@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00392
+MTYPVVKDLARDGIPVRLCCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLAVDALQMALARR
+GGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMGRVGAAGDNAAMESFFALLQKNV
+LNRRRWQSFDQLRLAIVSWIERTYHRRRRQAPLGRLTPVEFEMVQSVQAAAAA
+>AS2_ACLBLIBL_00411
+MTYPVVKDLARDGIPVRLCCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFLKR--------------------------
+----------PGSDEDS-------------------------------------------
+-----------------------------------------------------
+>KBS0714_MOLHKGIG_00626
+MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSAREWSDAHAANAVLDAHAGDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVRVRCCHWFRRGSGKRPGPAVHDDLVRREFR
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLALDALQMALARR
+GGKAEVQGCRVHSDRGSQGGFNR--SSQHPLGITGGMGD----GKQGLGEE---------
+---------DQ------------------------------------------
+>KD337_NAFOICDF_02188
+MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYPWLAEPVSAREWSDAHAANAVFDAHADDP
+EFGYRFLADELRGRGLDVSDHQVLKACRLVRVRCCHSIRRGSGKRPGPAVHDDLVRRQFR
+ADKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSIDRRMSSQLAVDALQMALARR
+GGKAGVQGCRVHSDRGSQFRARRFVETLRVNSLIGSMGRVGAAGDNAAMESFFALLQKNV
+LNRRRWDSFAQLRLAIVSWIERTYHRRRRQARLGKLTPVEFEMVQSVQAAAAA
+>SA211_MHAAABBN_00371
+MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLAVDALQMALARR
+GGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMGRVGAAGDNAAMESFFALLQKNV
+LNRRRWQSFDQLRLAIVSWIERTYHRRRRQARLRKLTPVEFEMVQSVQAAAAA
+>TT9_LFPAFLNI_00605
+MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFA
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLAVDALQMALGRR
+GGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMGRVGAAGDNAAMESFFALLQKNV
+LNRRRWQSFDQLRLAIVSWIERTYHRRRRQARLGKLTPVEFEMVQSVQAAAAA
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000089.fa

@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00402
+MNSGTGTGTDTGTGPAAGRVLVVDDEKPLARMVATYLERAGYEV-----ALTH----TGP
+AAVQAARVHEPDVMVLDLGLPGLDGIEVCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVG
+ADDYITKPFSVRELVARVGAVMRRPRTTVSAPEPERV-CGDLVI--DLAAHEARVSGQVV
+QLTRTEFDLLAALSGRPHQAFSRRQLIDIVWDPAWVGDERLVDVHIKNLRRKLDTDPARY
+IDTVRGVGYRMAEQ-----
+>KBS0714_MOLHKGIG_00630
+MNSGTGTGTDTGTGPAAGRVLVVDDEKPLARMVATYLERAGYEV-----ALTH----TGP
+AAVQAARVHEPDVIVLDLGLPGLDGIEVCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVG
+ADDYITKPFSVRELVARVGAVMRRPRTTVSAPEPERV-CGDLVI--DLAAHEARVSGQVV
+QLTRTEFDLLAALSGRPHQAFSRRQLIDIVWDPAWVGDERLVDVHIKNLRRKLDADPARY
+IDTVRGVGYRMAEQ-----
+>KD337_NAFOICDF_00452
+M-----------TGP---DLLLIEDDDRLGPLLRDLLS-LDWEV-----TWSP----TLA
+AARAELDRRLFAVLVVDRGLPDGDGVDLVRELRARGVAVPALLLTAYGELEDRVHGLDAG
+ANDYLVKPFEVAELQARLRALTRDYSGRGAGVE-----IGSWMFYPDNRTVESPYTGRIL
+-LTEKESALLAVLASAPDTAFTRAHLLSAVFEHG--EQEGTVDTYVHYLRRKTDRS---L
+VETVRGVGYRLGTP----T
+>KD337_NAFOICDF_01060
+M----------------------------ARLLMLTRAASAVEVLPALDLLTHDVERADP
+RAALAAGREDVDGVLLDATSGLAEARTLARDLASLAPEVPVVAVMAEGALT--AVGPEWS
+LADIVLTGAGPAEVDARVR-LLRPADAPVAGGAAERLAVGGVEI--DPVGYRARLDGRAL
+NLTFREFELLKHLAQSPGRAFSREQLLREVWGDDYFGGTRTVDVHVRRLRAKLGPDREQM
+IGTVRNVGYRFTPRPDGDA
+>KD337_NAFOICDF_02199
+MNSGTGTGTDTGTGPAAGRVLVVDDEKPLARMVATYLERAGYEV-----ALTH----TGP
+AAVQAARVHEPDVMVLDLGLPGLDGIEVCWRVRAFS-ECYVLMLTARGDEHHRLEGLAVG
+ADDYITKPFSVRELVARVGAVMRRPRTTVSAPEPERV-CGDLVI--DLAAHEARVSGQVV
+QLTRTEFDLLAALSGRPHQAFSRRQLIDIVWDPAWVGDERLVDVHIKNLRRKLDADPARY
+IDTVRGVGYRMAEQ-----
+>TT9_LFPAFLNI_00601
+MNSGTGTGTDTGTGPAAGRVLVVDDEKPLARMVATYLERAGYEV-----ALTH----TGP
+AAVQAARVHEPDVIVLDLGLPGLDGIEVCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVG
+ADDYITKPFSVRELVARVGAVMRRPRTTVSAPEPERV-CGDLVI--DLATHEARVSGQVV
+QLTRTEFDLLAALSGRPHQAFSRRQLIDIVWDPAWVGDERLVDVHIKNLRRKLDADPARY
+IDTVRGVGYRMAEQ-----
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000093.fa

@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00469
+MDVTFTPLDPAGADRDALVALLTENAWPFHTRPLVTRPEAEEAVDGGAWEDEDHRTFWIEHPEHGRVGVVRLEDLTDPTP
+LFDLRVAERFRGRGLGAQILTALTRHVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVDGGEPLASVAY
+AMLRQDWASGTTTPVPADVDAPPPAGRKEGAAAGGRAPDWPLPTARLTLRPHREDDLGWLQEMYTQPEVVRHLLDEPWDE
+ATAREKLAKRITWDDLGGPSGAVSLVVEHAGVPVGDVILWLTDRERGVAEIGWALDPRHAGQGFAREAAAALLDLGFETS
+GLHRVVARMDARNTASARLAETLGMRREAHHRQDWWSKGEWTDTLVYAMLASDRG-------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------
+>AS2_ACLBLIBL_00641
+--------------------------------------------------------------------------------
+-----MAERFRGRGLGAQILAALTRHVFETMPAVDRFEGQTREDNIPMLRAFRRAGWVKEAHYRRGWPVEGGEPLASVAY
+AVLRQDWETGTTTPVPADVDVPSRRKRDVGAESNGHIPDWPMRTERLTLRPHREDDLGWLQEMYAQPEVVRHLLDEPWDE
+PTARQKLVRRIEWNDLAGPSGVASLVIEHAGVPVGDVILWLTNRERGVAEIGWALDPRHAGQGFAREAAAAMLALGFEVH
+GLHRVVAQMDARNTASARLAEAIGLRREAHHRQDWWSKGKWTDTLVYATLSSDRD-------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------
+>KBS0714_MOLHKGIG_02265
+MDVTFTPLDPAGADRDALVALLTENAWPFHTRPRVTRPEAEKAVDGGAWEDEDHRTFWIEHPEHGRVGVVRLEDLTDPTP
+LFDLRVAERFRGRGLGAQILTALTRHVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVDGGEPLASVAY
+AMLRQDWASGTTTPVPADVDAPPPAGRKEGAAAGGRAPDWPLPTARLTLRPHREDDLGWLQEMYMQPVVVRHLLDEPWDE
+ATARAKLAKRITWDDLGGPSGAVSLVVEHAGVPVGDVILWLTDRERGVAEIGWALDPRHAGQGFAREAAAALLDLGFETS
+GLHRVVAQMDARNTASARLAETLGMRREAHHRQDLWSKGEWTDTLVYAMLASDRGVRG----------------------
+------------------------------------------------------------------------HL------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------
+>KD337_NAFOICDF_00419
+MDVTFTPLDPAGADRDALVALLTENVWPFHMRPRITRSEAEEAVDGGAWEDEDHRTLWIEHPEHGRVGVVRLDELTDPTP
+LFDLRVTERFRGRGLGAPILTALTRLVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVEGGEPLASVAY
+AVLRQDWETGTTTPVPAEVDVPPQVEHGEGAAAVGPAPDWPLRTERLTLRPHREDDLGWLRDMYARPEVVRHLLDEPWDE
+ATARQKLAKRIAWDGLAGPSGAVSLVVEHRGVPVGDVILWLTDRERGVAQIGWALHPEHAGQGFAREAAAALLTLAFETY
+DLHRVVAQMDARNTASAQLAEAVGLRREAHHRQDWWSKGEWTDTLVYATLASDRG-------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------
+>SA211_MHAAABBN_01960
+MDVTFTPLDPAGADRDALVALLTENAWPFHTRPRVTRPEAEKAVDGGAWEDEDHRTFWIEHPEHGRVGVVRLEDLTDPTP
+LFDLRVAERFRGRGLGAQILTALTRRVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVDGGEPLASVAY
+AMLRQDWASGTTTPVPADVDAPPPAGRKEGAAAGGRAPDWPLPTARLTLRPHREDDLGWLQEMYMQPEVVRHLLDEPWDE
+ATARAKLAKRITWDDLGGPSGAVSLVVEHAGVPVGDVILWLTDRERGVAEIGWALDPRHAGQGFAREAAAALLDLGFETS
+GLHRVVAQMDARNTASARLAETLGMRREAHHRQDLWSKGEWTDTLVYAMLASDRGGGGPSMTANGLLRSPHAARDREGVD
+SRGSPGVRTEVLEDLQVEKPLVRAGGLGEHRLVGADVDDLPHTEAGGLLRLKDRQVSVAGDAVDLGEPPRGPHLVCRPHH
+GPHTTQRDRPGGAAVVVMGDDPACRGQGPSLTHSPGGQQDQLVDFPHGDRVTAAFLLPVRERGAADGADGDVHGRSVGAG
+PHPGARGASSPVMLGIGLEARRVKARTTHPHRVHRIDAMTRTGAFTIAGLAAFAISTGILVLLLITGSETPRETMAFFAL
+IIGCYALSALCFAAAKRVLLALLSGALAVVSFPLALFIGYVVEMLQSQQ
+>TT9_LFPAFLNI_02198
+--------------------------------------------------------------------MVRLEDLTDPTP
+LFDLRVAERFRGRGLGAQILTAITRHVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVDGGEPLASVAY
+AMLRQDWASGTTTPVPADVDAPPPAGRKEGAAEGGRAPDWPLPTARLTLRPHREDDLGWLQEMYTQPEVVRHLLDEPWDE
+ATARAKLAKRITWDDLGGPSGAVSLVVEHAGVPVGDVILWLTDRERGVAEIGWALDPRHAGQGFAREAAAALLDLGFETS
+GLHRVVAQMDARNTASARLAETLGMRREAHHRQDLWSKGEWTDTLVYAMLASDRGVRG----------------------
+------------------------------------------------------------------------HL------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000094.fa

@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00489
+MTAQTP--ATPAVPETMKAVIMRAPGDVVVEEVDTPRVAKPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPADPDRLADYLAASDVLGTGWYAAVAANAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIAFSRHEDRAALAREFGADVIIAERGEEGAAKV
+KELTNGYGAHGVCEAVGTQESMDQALASVRPGGHVGFVGVSHDQTIDGSRLFGLEIHLEG
+GPAPVRRFLPELIERIQAGEIQPGRVFTARMPIDDAAEAYKAMDERREIKVLLEV
+>KBS0714_MOLHKGIG_02252
+MTAQTP--ATPAIPETMKAVVMRAPGDVVVEEVDTPRVAQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPSDPDRLADYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLGAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFGRQIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARRPIDDAAEAYQAMDERREIKVLLEV
+>KBS0714_MOLHKGIG_02276
+MTTETPTLAAPEIPATMKAVVMRAPGDVVVEEVDTPRVAQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPSDPDRLTDYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFGREIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARRPIDDAAEAYQAMDERREIKVLLEV
+>KD337_NAFOICDF_00435
+MTAQTP--TTPAIPETMKAVVMRAPGDVVVEEVDTPRVVQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPSDPDRLADYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFGREIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARMPLDDAAEAYRAMDERREIKVLLEV
+>SA211_MHAAABBN_01951
+MTAQTL--ATPAIPETMKAVVMRAPGDVVVEEVDTPRVAQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSRAQYMRVELADGSLVKVPGGEPSDPDRLADYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFAREIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARMPLDDAAEAYRAMDERREIKVLLEV
+>TT9_LFPAFLNI_02183
+MTAQTL--ATPAIPETMKAVVMRAPGDVVVEEVDTPRVAQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPSDPDRLADYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFAREIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARMPLDDAAEAYQAMDERREIKVLLEV
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000097.fa

@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00578
+---------------------------MFDAVAERYDLMNTVMT-------WGQEPRLVR
+HTVARANVPAHGRVLDLATGTGDLAFEVLRQHPDATVVGADISAEMMEVGRRR-EGGDRV
+EWVVADAQDLPFEDASFDSVTHGYLLRNVADIPAALAEQFRVLRPGGWMAALETSPPPAN
+IIRPFSTFYMHQVMPRLARVITDKPEAYEYLSSSTKAFHAPEEIADMLAHAGFVNIGHET
+HMFGTLATHWAMKPVA
+>KBS0714_MOLHKGIG_00604
+MPK-----------------------------------MSGIETAFCRSALWGRFARDII
+VPWSLGGQDLGGDVLELGAGSGQMAAALLQRSPGMRLTLTDIDERMVATARRRFPTSPRL
+TVQQADSTALPFAESSFDVVLSFLMLHHVVNWKAAVAEAARVLKPGGMLIGYDLT-----
+------------------------------------AWSSP-------------------
+---------------S
+>KBS0714_MOLHKGIG_02174
+MSQ-NPLPAPRGDAQRGAADHHDRVSAMFDAIAGRYDLMNAVMT-------WGQEPRLVR
+RTVARANIPAQARVLDLATGTGDLAFEVLKQHPDAQVVGADIAAEMMEVGRAR-AGGDRI
+EWVVADATDLPFEAGSFDAVTHGYLLRNVADIPATLAEQFRVLRPGGWVAALETSPAPDN
+VLKPFSSFYIHRVMPQLAKLIADRPEAYAYLSSSTKAFHTPDEVADLFAEAGFVNIGHET
+HMFGTLATHWAMKPVD
+>KD337_NAFOICDF_00505
+MSETSPSPLPRPASLAHDADHGARVSGMFDAIAGRYDLMNTVMT-------WGQEPRLVR
+RTVERANVPAAARVLDLATGTGDLALEILKQHPDAHVVAADFAPEMMEVGRTR-PNGDRI
+EWVEADALALPFADGEFDSLTHGYLLRNVANIPAALAEQFRVLRPGGWVAALETSPAPDN
+LIKPFSSFYMHRIMPRLARLITDRAEAYEYLSSSTRAFHTPEEIAGMLADAGFVNIGHEL
+HMFGTLATHWAMKPLD
+>SA211_MHAAABBN_01888
+MSQ-NPLPAPRGDAQRGAADHHDRVSAMFDAIAGRYDLMNAVMT-------WGQEPRLVR
+RTVARANIPAQARVLDLATGTGDLAFEVLKQHPDAQVVGADIAAEMMEVGRAR-AGGDRI
+EWVVADATDLPFEAGSFDAVTHGYLLRNVADIPATLAEQFRVLRPGGWVAALETSPAPDN
+VLKPFSSFYIHRVMPQLAKLIADRPEAYAYLSSSTKAFHTPDEVADLFAEAGFVNIGHET
+HMFGTLATHWAMKPVD
+>TT9_LFPAFLNI_02119
+MSQ-NPLPAPRGDAQRGAADHHDRVSAMFDAIAGRYDLMNAVMT-------WGQEPRLVR
+RTVARANIPAQARVLDLATGTGDLAFEVLKQHPDAQVVGADIAAEMMEVGRAR-AGGDRI
+EWVVADATDLPFEAGSFDAVTHGYLLRNVADIPATLAEQFRVLRPGGWVAALETSPAPDN
+VLKPFSSFYIHRVMPQLAKLIADRPEAYAYLSSSTKAFHTPDEVADLFAEAGFVNIGHET
+HMFGTLATHWAMKPVD
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000099.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00595
+MRADARANRQDLLAAAGRLLEEQGAAMSLRGVAQEAGVGVGTLYRHFPTRRDLLDAVLED
+VVARVSGILHAFLDG------GGSADRRWRRLAEELAAVNLTSLVTAGDDLEAADRPQEA
+LIVEAEQVIISLTDRAVTEARRAGLVALGVTGTRYLTGLL-AVTRPPAGELLARHADQRD
+WLLGVYLRGLRP--
+>KBS0714_MOLHKGIG_02162
+MRADARANRQDLLAAAGRLIATQGAAMSLRGVAQEAGVGVRTLYRHFPTRRDLLDAVLED
+VVARTGGILQAFLDGVGGDGHGGGTEARWRRLAEDLGAVNLASLAAARDDFDPADRPPEA
+LIAEAERVILELADQVVAEARRAGLVGPDVTGADYLFGLL-MVTRSPECALLGHGPDQRG
+WLLDTYLRGLRP--
+>KD337_NAFOICDF_00518
+M-----------------------------------------------------------
+---------------------------------------------------QEEDTPPAE
+AMGRAEDAVMGLADRAVDLAREAGLVGDDVTGRAYMNGLI-AVTRPPLPALESCRDDLED
+WLLTVFLRGLRPAA
+>SA211_MHAAABBN_01875
+------------------------------------------------------------
+------------------------------------------------------------
+-------MILELADQVVAEARRAGLVGPDVTGADYLFGLL-MVTRSPECALLGHGPDQRG
+WLLDTYLRGLRP--
+>SA211_MHAAABBN_01876
+MRADARANRQDLLAAAGRLIATQGAAMSLRGVAQEAGVGVGTLYRHFPTRRDLLDAVLED
+VVARTGGILQAFLDGVGGDGHGGGTEARWRRLAEDLGAVNLASLAAARDDFDPADRPPR-
+----------------------------------------------PSSP----------
+----------RPSV
+>TT9_LFPAFLNI_02107
+MRADARANRQDLLAAAGRLIATQGAAMSLRGVAQEAGVGVGTLYRHFPTRRDLLDAVLED
+VVARTGGILQAFLDGVGGDGHGGGTEARWRRLAEDLGAVNLASLAAARDDFDPADRPPEA
+LIAEAERVILELADQVVAEARRAGLMGPDVTGADYLLWVMRFLARGPG------------
+--------------
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000101.fa

@@ -0,0 +1,78 @@
+>AS2_ACLBLIBL_00658
+MAASPSPSDRAAEALGRTALQDAEGTRRVDLDVTGMTCASCVGRVERKLGKIEGVEASVNLPLERATVTVPASVSDQDLL
+DAVAKAGYTAAVRPDAQARPARRGRHDDGGTRPGADHAGHPDHR-------DH-ETPGEDHAG-HEG--HDDHMAHGPRA
+DVLRPRLIVAAILTVPIVLISMVPALQFPHWGWVALALSAPVALWCGWPFHSAAFRAARHGSSTMDSLVSVGVLVAWTYS
+AVELVLE----PGMTAHVGGTMAEM-MRHSLYFETAAVITTFLLLGRWLEARAKREAGRALRSLLDLGAAQATVLPNWDA
+QTPHPSTSAAATPVAAVSGDFSEVEAASTSDKSPQTHHDGGADALTERVIPAEELEPGDVVVIRPGEKVPTDAVVLEGTS
+AVDASLLTGESVPVEVGPGDEITGATVNTSGRLIARATRTGADTTLAQMGRLVSDAQTGKARVARLADRISAVFVPIVLV
+LAVLTFVVWMLVTGGDVAPALRAGVAVLVIACPCALGLATPVGLLAGTGRASQLGILIGGPEVLEDTRTVDTIVLDKTGT
+VTEGRMALSDV--------------------------HAFADDAALTE--DRILALAAAVEAGSEHPIARAIVAGARERG
+LTVPRVADFASTAGGGVTGTVALPE--------------AGSVRVAVGRGDLV-----GEPSPAQQAEFDAAEQAGATAV
+WVAVDGRVAGVLSVKDTVKPSSAAAIARLKELGLRPLLVTGDNAAVAAQVAAAVGIPAEDVVAGVRPEDKVDVVTRLQSE
+GRVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLDQVVQALDLSRRTLGIIRMNLFWAFAYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R
+>KBS0714_MOLHKGIG_02122
+MTHP---------ASSTPAGPQSETTRRVDLDVTGMTCASCVGRVERKLGKLEGVTASVNLPLEQATVTAPAGVSDEELV
+AAVEKAGYGATVR-----RPA-----------PPAGHAGHAGHAHTS--------EHGEEHAADHDGVDHHDHMAHGPSE
+DVLTPRLIGAAVLTVPLVLISMVPALQFPHWGWVAFALAAPVALWAAWPFHSAAFRAARHGSSTMDTLVSLGVLVSFSFS
+AVELILA----PDMTAHVGGTMAEM-AHHSLYFETAAVITTFLLLGRWLEARAKREAGAALRALLDLGAAQATLY-----
+--------------------------------DPETH--------DERTVPAESLAPGDVVLIRPGEKVPTDAEVLEGTS
+AVDASLLTGESVPVEVGPGDALTGATLNTSGRLVARATRVGSDTTLAQMGRLVSEAQTGKARVARLADRISAVFVPIVLG
+IAVLTFAVWMIVT-GDLPSALRAGVAVLVIACPCALGLATPVGLLAGTGRAAQLGILIRGPEVLEDSRTVDTIVLDKTGT
+VTEGRMALADVLVLDPAFVAETGAS-----------RSAFVDETAPDQAADVLLTLAAAVERGSEHPIARAIVAGAEERG
+LTVPGVADFASTAGGGVSGLVALPHDDGAPGSGAHGAAGPDPVRVAVGRGSVLETALDGGIPAEHRAAFEAAEQAGATAV
+WVAVGGRVAGVLSVRDTVKETSADAIARLKELGLRPLLVTGDNAAVATQVAAAVGIPAEDVVAGVRPEDKVDVVRRLQSE
+GHVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLHQVVQALDLSRRTLGIIRMNLFWAFAYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R
+>KD337_NAFOICDF_00575
+MTHP---------ASSAPAGPQSETTRRVDLDVTGMTCASCVGRVERKLGKLEGVTASVNLPLEQATVTAPADVSDEELV
+AAVEKAGYGATVR-----RPA-----------PPA---GHAGHAHTS----EHGEGHGEEHAADHDGVDHHDHMAHGPGE
+DVLKPRLIGAAVLTVPLVLISMVPALQFPHWGWVAFALAAPVALWAAWPFHSAAFRAARHGSSTMDTLVSLGVLVSFSFS
+AVELILA----PDMTAHVGGTMAEM-AHHSLYFEAAAVITTFLLLGRWLEARAKREAGAALRALLDLGAAQATLY-----
+--------------------------------DPETH--------DERTVPAESLAPGDVVLIRPGEKVPTDAEVLEGTS
+AVDASLLTGESVPVEVGPGDAVTGATLNTSGRLVARATRVGADTTLAQMGRLVADAQTGKARVARLADRISAVFVPVVLG
+LAVLTFAVWMLVT-GDLPSALRAGVAVLVIACPCALGLATPVGLLAGTGRASQLGILIRGPEVLEDSRTVDTIVLDKTGT
+VTEGRMALADVLVLDPAFVTDTGASRSASVAETDAPRSAFVAETAPDRATDLLLTLAAAVERGSEHPIARAIVTGAEERG
+LTVPDVADFASTAGGGVSGLVALPHDDGALASGAHGAAGPAPVRVAVGRGSVLETALDGGIPAEHRAAFEAAEQAGATAV
+WVAVGGRVAGVLSVRDTVKDTSADAIARLKELGLRPLLVTGDNAAVATQVADAVGIPAEDVVAGVRPEDKVDVVRRLQSE
+GRVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLHQVVQALDLSRRTLGIIRMNLFWAFLYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R
+>KD337_NAFOICDF_00718
+M--------------STSAPPT--GGPDIELEIGGMTCASCANRIEKKLNKLDGVAATVNYATEKAKVTVPAGYDPSLLV
+AEVEKTGYTAALP-----KPK-----------DTT--------ANTS----E--TEAGEE---------EDSELTS----
+--LRHRLIGAIVLTVPVIAMAMIPALQFTYWQWASLALAAPVIIWGAWPFHKAAWTNLKHGAATMDTLISMGTSVALLWS
+LYALFLGTAGTPGMTHPFEFTIAPSDGAANIYLEVGAGVTMFILAGRYFEKRSKRQAGAALRALLELGAKEVAVL-----
+-------------------------------------RDG-----VEVKIPTSELAVGDEFIVRPGEKIATDGLVTSGSS
+AVDASMLTGESVPVEVREGDSVTGATVNAGGRLVVRATRVGSDTQLAQMAKLVEDAQTGKAEVQRLADRISGIFVPIVIV
+VAFITLGAWLGGG-FPVAAAFTAAVAVLVIACPCALGLATPTALLVGTGRGAQMGVLIKGPEVLESTRKVDTVVLDKTGT
+VTSGKMTLTDV-----------------------------ITEPGVDR--AELLRFAGALEDSSEHPIAQAIAKGATQEV
+GQLPTPEDFANVEGKGVQGIVE-------------------GTPVVVGRESLL-ADWSQKLSPEVAQAKAQAEGEGKTVV
+AIGWDGAARGILVVADTVKPTSAEAIRGLKEIGLTPVLLTGDNEAVARQIASEVGI--DEVIAEVLPKDKVDVVTRLQEE
+GKIVAMVGDGVNDAPALAQADLGLAMGTGTDVAIEASDITLVRGDLRAAVDAIRLSRKTLSTIKTNLFWAFAYNTAAIPV
+AALGMLNPMLAGAAMAFSSVFVVGNSLRLRGFTSVASK
+>SA211_MHAAABBN_01830
+MTHP---------ASSTPAGPQSETTRRVDLDVTGMTCASCVGRVERKLGKLEGVTASVNLPLEQATVTAPAGVSDEELV
+AAVEKAGYGATVR-----RPA-----------PPAGHAGHAGHAHTSEHGEEHGEEHGEEHAADHDGVDHHDHMAHGPSE
+DVLTPRLIGAAVLTVPLVLISMVPALQFPHWGWVAFALAAPVALWAAWPFHSAAFRAARHGSSTMDTLVSLGVLVSFSFS
+AVELILA----PDMTAHVGGTMAEM-AHHSLYFETAAVITTFLLLGRWLEARAKREAGAALRALLDLGAAQATLY-----
+--------------------------------DPETH--------DERTVPAQSLAPGDVVLIRPGEKVPTDAEVLEGTS
+AVDASLLTGESVPVEVGPGDALTGATLNTSGRLVARATRVGSDTTLAQMGRLVSEAQTGKARVARLADRISAVFVPIVLG
+IAVLTFAVWMLVT-GDLPSALRAGVAVLVIACPCALGLATPVGLLAGTGRAAQLGILIRGPEVLEDSRTVDTIVLDKTGT
+VTEGRMALADVLVLDPAFVAETGAS-----------RSAFVAETAPDQAADVLLTLAAAVERGSEHPIARAIVAGAEERG
+LTVPDVADFASTAGGGVSGLVALPHDDGALGSGAHDAAGPAPVRVAVGRGSVLETALDGGIPAEHRAAFEAAEQAGATAV
+WVAVGGRVAGVLSVRDTVKETSADAIARLKELGLRPLLVTGDNAAVATQVAAAVGIPAEDVVAGVRPEDKVDVVTRLQSE
+GAVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLHQVVQALDLSRRTLGIIRMNLFWAFLYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R
+>TT9_LFPAFLNI_02060
+MTHP---------ASSTPAGPQSETTRRVDLDVTGMTCASCVGRVERKLGKLEGVTASVNLPLEQATVTAPAGVSDEELV
+AAVEKAGYGATVR-----RPA-----------PPAGHAGHAGHAHTS----EHGEEHGEEHAADHDGVDHHDHMAHGPSE
+DVLTPRLIGAAVLTVPLVLISMVPALQFPHWGWVAFALAAPVALWAAWPFHSAAFRAARHGSSTMDTLVSLGVLVSFSFS
+AVELILA----PDMTAHVGGTMAEM-AHHSLYFETAAVITTFLLLGRWLEARAKREAGAALRALLDLGAAQATLY-----
+--------------------------------DPETH--------DERTVPAESLAPGDVVLIRPGEKVPTDAEVLEGTS
+AVDASLLTGESVPVEVGPGDALTGATLNTSGRLVARATRVGSDTTLAQMGRLVSEAQTGKARVARLADRISAVFVPIVLG
+IAVLTFAVWMIVT-GDLPSALRAGVAVLVIACPCALGLATPVGLLAGTGRAAQLGILIRGPEVLEDSRTVDTIVLDKTGT
+VTEGRMALADVLVLDPAFVAETGAS-----------RSAFVDETAPDQAADVLLTLAAAVERGSEHPIARAIVAGAEERG
+LTVPGVADFASTAGGGVSGLVALPHDDGAPGSGAHGAAGPDPVRVAVGRGSVLETALDGGIPAEHRAAFEAAEQAGATAV
+WVAVGGRVAGVLSVRDTVKDTSADAIARLRQMGLRPLLVTGDNAAVAAQVAEAVGIPAEDVVAGVRPEDKVDVVTRLQSE
+GAVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLHQVVQALDLSRRTLGIIRMNLFWAFLYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000102.fa

@@ -0,0 +1,132 @@
+>AS2_ACLBLIBL_00681
+MATADSGDVLPHLRTEAIRAVVGPTSADRGFAVAASGAVGRLRYDAATGRLSASVQGTAPSPYRVQVQLQEAYDDAAEAG
+AGALMEPVGGRCTCPVGTDCKHVAAALYQVVRLDAHQALDDARRKLAEMVTTADALPAPAGRGHDDAARPDAGPRGAAAG
+PDGESAAPEAPHSGLDWRRVMEPLAGLD-APRRLGAPPALAIGVELVAESSRNAFQQWGPAPAGEDQVREGRPLYVTLRP
+LKRGAKGTWIKGGLTWKNFQFGRAEFAPAQERAMRLIWRQLQAEDSYPTDAWFGLHSFDSPRIWQLLAEAREVGVELVPL
+GLLTDVVLEAPAAVGLDVARAPDGGLDVAPSLDPA---------------PPGRGLAGVHAVGGIGFYRV-ELTDEEAVL
+HLIPAERPVPEAVQQLVLAGGPVRVPAVDREEFLGRIYPRLRGALPVTSGDASVELPEFEPPVLRLRADFRPDHELVLRW
+SWLYFDPPRELGLDAGGDPLRDTRHEDAVLRAVAELWPRAGRAEEQVLEGVAAARFSEQVLPLLQQAEHVRVDVTGHRPD
+YRELKSAPRIEVGTKATKNDWFDLGVQVSVDGHVLPFVELFTALVQGKTTLILADGSYLGLDHPAFDRLRALLSEAATLQ
+EWTPENTAVSRHQVGFWEDLKELADEVEEDPEWTAAVGRLAAVERLPEAPEVPGLQADLRPYQEDGLRWLAFLWEQDL-G
+GILADDMGLGKTVQTLALSAHARQARPERPPFLVVAPSSVVSVWAAEA-QTFTPDLDVRVLDTTVRKRGTDVAAEAAG--
+ADVVVTSYTL-LRIDAGQFGGIDWGGVVFDEAQFLKN----RAAKVHTVARDLRAPFR-LAITGTPMENSLTDLWALLGV
+VVPGLFPSHRRFREAYVTPIETGEDP---ERMVALRRRVRPFMLRRSKEL---VAKDLPPKQEQVLNVELEPA--HRKLY
+DRV---LQRER----------------RKVLGL----------------------------LGDMDGNRFTIFKSLT---
+-----------------------------------LLRMLALAPQIVDEQYASVPSSKLERFLDDLTEVIAEGHRVIVFS
+QFTSFLRVIAEEL-------------------DHMEVAHAYLDGSTRG-----------RADVIRGFR-EGQAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAEAQAVDRAHRIGQERTVMVYRLVSEGTI-EEKVLELQRRKAELFGALMDESDDS
+GAGAFTDSL--------------TAEDI----RELLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AED---------------------------------------------
+>AS2_ACLBLIBL_01500
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-----NLPLTDYQAKYYA--HELQRSYAND-----HVGKLAGL--------LFDAQVEPKPHQIDAA--LFALQTPFLPG
+VILADEVGLGKTIEAGIVISQYWAER--RRSILIVAPSSLRQQWQQELYEKFL--IPSAILDPKSKD---SLLAAAGGRS
+AQVLICSYEFALRHETSLLKA--WDLVVADEAHRLRNYWTGKTKAAEAVAHVVSGAHKTVLLTATPLQNKLEELYGLVSI
+FDPNYFYSLDAFRERYVKNRDLGGDDDLVERVATVSKRT----LRRDADKYIHFTKRLP------LTVEFTPSPDEARLY
+DLVNDYLQRDELFAFAGSQRHLSALIIRKRLGSSTYAVASTLENIANRLAEEVAAGQRRDGRGGLVTADFTVDDEITSEE
+LEEAEEIEGAGPASRPSSSPLDESLLEAMRAEVAELRDYAALARSITENQKAVKLGEALDLGFERLRE-LGAPQKAIIFT
+DSTKTQEYIARSLREAGRGDGLVLFNGSNNGPEQTAIYQAWLKANQDGDLITGIAAVDRRKALVDYFRTEG---TIMIAT
+EAAAEGINLQFCSMLVNYDLPWNPQRVEQRIGRVHRFGQKHNVVVVNFSNKGNIAEQRILELLTNKFQLFSSVFGASDEV
+-LGAIEDGLDFEKTISDILTRCRTADELDAAFRELEGQYASEISREMASAKAKVFDNLDPHVQDRLKAYDTQSGEVLNKF
+ERLLLAVTRHELDRFATFEGDGRAFVLNESPVQDVPTGRYFFKSQPLENAHQYRYASSLAQYVVDTSKGHETPARELTFS
+LGQSERVSSAIRALEGTSGELTVNLATFRMKARDEDVSESYMLAGALTDDGQWLDEEYVADILDLACISVGEQPVAIDES
+RFTPHLDARRAELEKEVQGRNSRYYDQQEELLYRNQQDRKAEHEGKIREYRAKEKEARKLARQADDPMEQLRLKKEARKW
+EQRAEEADEDFRDTRKKLRAEADKYLELIEQSLQGTQETEHLFTIRWRITT
+>KBS0714_MOLHKGIG_02098
+MATADSGDVLPHLRTEAIRAVVGPTSADRGFAVAASGAVGRLRYDAATGRLSASVQGTAPSPYRVQVQLQEAYDDAAEDG
+AGALMEPVGGRCTCPVGTDCKHVAAALYQVVRLDADQALDDARRKLAEMVTTADALPAPAGRGHD-----GGGPAGLDA-
+PAADGAAPPPP-AGLDWRRVMEPLAGLH-GPRRVGTPPALAIGVELVAESSRNAFQQWGPATAGEEQVREGRPLYVTVRP
+LKRGAKGTWIKGGLTWKAFQFPRAEFAPAQERAMRLIWRQVQAEDSYPGDAWFGLHVFDSPRIWQLLAEAREVGVELVPL
+GLLTDVVLEAPVAVGLDVTAAPDGGLDVAPSLDPA---------------PPGPGLSGVHAVGGIGFYRV-ELTDEEAVL
+HLIPAARPVPEAVQQLVLAGGPVRVPAADREEFLGRIYPRLRGALPVTSGDASVELPEFEPPVLRLRADFRPGHELVLRW
+SWLYFDPPRELGLDAGGDPLRDTRHEDAVLRAVAELWPRAGRAEEQVLEGVGAARFSEQVLPLLQRADHVRVDVTGDRPD
+YRELKAAPRIEVGTKATQNDWFDLGVQVSVDGHVLPFVELFTALVQGRTTLILADGSYLGLDHPAFDRLRALLSEAATLQ
+EWTPEHTPVSRHQVGFWEDLKELADEVDEDPEWTAAVGRLAAVERLPEAPRPAGLKADLRPYQEEGLRWLAFLWEQDL-G
+GILADDMGLGKTVQTLALFAHARQARPEPPPFLVVAPSSVVSVWAAEA-EKFTPDLDVRVLDTTTRKRGTAVADEVAG--
+ADVVVTSYTL-LRIDAGQYGGLDWGGVVFDEAQFLKN----RAAKVHTVARDLRAPFR-LAITGTPMENSLSDLWALLDV
+VVPGLFPSHRRFRETYVTPIETGGDP---ERMAALRRRVRPFMLRRSKEL---VAKDLPSKQEQILQVELEPA--HRKLY
+DRV---LQRER----------------RKVLGL----------------------------LGDMDGNRFTIFTSLT---
+-----------------------------------LLRMLALAPQIVDDQYASVPSSKLERFLDDLTEVIGEGHRVIVFS
+QFTSFLRVIAEEL-------------------DHLEIEHAYLDGSTRG-----------RADVIRGFR-EGEAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAEAQAVDRAHRIGQERTVMVYRLVSEGTI-EEKVLELQRRKAELFGALMDESDDS
+GAGAFTDSL--------------TAEDI----REMLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AEE---------------------------------------------
+>KD337_NAFOICDF_00595
+MAPGVSGDPLPHLRTEAIRALVGPTSADRGFDIAAEGGVLRVTYDASRLRLTSAVRGTAPQPYRQAVRLQPS-GETGPDG
+E-PLLEPTAGRCQCPVGEDCKHVAAALYEITRRHADAARHAAREELASRVTTADRLPSPE-RA-------GAAPARPDA-
+--------PAPEAGLPWRGVLESLAGLDGGPRRLAPPPDLAIGVELVAESSRNAFAQWGPAPAGEEHLREARLLYVIVRP
+LKRGAKGTWIKGGLTWKAFQFPRAEYDPAQERALRLIWRQLQAEDSYPTEGWFGLHAFDSPRIWQLLAEAQEAGVELVPQ
+GILADVVLDAPVEVGLDVASAPDGGLEVAPSLAPAGGAGEGAPADDAAARPDAERLRDTHAIGSIGFYRADEEEDGTWTL
+HLLPAVRRVPEPVQEMVLAGRPVHVPTADREEFLGRIYPRLRAALDVGSADASVELPEFEPPVLRLQADFRPGHRLVLRW
+SWLYFDPPRELGL--GHDGLRDPRHEEAVLRAAAQVWPRVGRAEEQELEGVGAARFSESVLPQLQRLDHVRVDVTGERPD
+YRELKAAPRIEVSTKAAQNDWFDLGVQVSVDGHVLPFVELFTALVHGKTTLMLQDGTWLGLDHPAFDRLRALLSEAAALQ
+EWTPEHTTLSRHQVGFWEDLKELADEAEEDPEWTAAVGRLAAVERLPEAPAVPGLKAELRPYQEDGLRWLRFLHDQDL-G
+GILADDMGLGKTVQTLALMAYARAEHPDRPPFLVVAPSSVLSVWASEA-AKFTPGLDVRVLDTTTRKRGTSVTEAAEG--
+ADVVVTSYTL-LRIDAAQHADASWAGIVLDEAQFLKN----RASKVHQVARDLRAPFR-LAITGTPMENSLSDLWALLEV
+VVPGLFPSHRRFRETYVTPIETGEHP---ERMASLRRRVRPFMLRRSKEL---VAKDLPPKQEQVLRVELDAA--HRKVY
+DRV---LARER----------------RKVLGL----------------------------LGDMDGNRFTIFKSLT---
+-----------------------------------LLRMLALAPQIVDREYAAVPSSKLERFLDDLEEVLAEGHRVIVFS
+QFTSFLRVVAEEL-------------------DAMEVEHAYLDGSTRN-----------RAEVIQDFR-EGDAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAENQAVDRAHRIGQERTVMVYRMVSEGTI-EEKVLELQQRKAELFGALMDESDDS
+GAGAFTDSL--------------TADDI----RELLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AEE---------------------------------------------
+>SA211_MHAAABBN_01805
+MATADSGDVLPHLRTEAIRAVVGPTSADRGFAVAASGAVGRLRYDAATGRLSASVQGTAPSPYRVQVQLQEAYDDAAEDG
+AGALMEPVGGRCTCPVGTDCKHVAAALYQVVRLDADQALDDARRKLAEMVTTADALPAPAGRGHD-----GGGPAGLDA-
+PAADGAAPPPP-AGLDWRRVMEPLAGLH-GPRRVGTPPALAIGVELVAESSRNAFQQWGPATAGEEQVREGRPLYVTVRP
+LKRGAKGTWIKGGLTWKAFQFPRAEFAPAQERAMRLIWRQVQAEDSYPGDAWFGLHVFDSPRIWQLLAEAREVGVELVPL
+GLLTDVVLEAPVAVGLDVTAAPDGGLDVAPSLDPA---------------PPGPGLSGVHAVGGIGFYRV-ELTDEEAVL
+HLIPAARPVPEAVQQLVLAGGPVRVPAADREEFLGRIYPRLRGALPVTSGDASVELPEFEPPVLRLRADFRPGHELVLRW
+SWLYFDPPRELGLDAGGDPLRDTRHEDAVLRAVAELWPRAGRAEEQVLEGVGAARFSEQVLPLLQRADHVRVDVTGDRPD
+YRELKAAPRIEVGTKATQNDWFDLGVQVSVDGHVLPFVELFTALVQGRTTLILADGSYLGLDHPAFDRLRALLSEAATLQ
+EWTPEHTPVSRHQVGFWEDLKELADEVDEDPEWTAAVGRLAAVERLPEAPRPAGLKADLRPYQEEGLRWLAFLWEQDL-G
+GILADDMGLGKTVQTLALFAHARQARPEPPPFLVVAPSSVVSVWAAEA-EKFTPDLDVRVLDTTTRKRGTAVADEVAG--
+ADVVVTSYTL-LRIDAGQYGGLDWGGVVFDEAQFLKN----RAAKVHTVARDLRAPFR-LAITGTPMENSLSDLWALLDV
+VVPGLFPSHRRFRETYVTPIETGGDP---ERMAALRRRVRPFMLRRSKEL---VAKDLPSKQEQILQVELEPA--HRKLY
+DRV---LQRER----------------RKVLGL----------------------------LGDMDGNRFTIFTSLT---
+-----------------------------------LLRMLALAPQIVDDQYASVPSSKLERFLDDLTEVIGEGHRVIVFS
+QFTSFLRVIAEEL-------------------DHLEIEHAYLDGSTRG-----------RADVIRGFR-EGEAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAEAQAVDRAHRIGQERTVMVYRLVSEGTI-EEKVLELQRRKAELFGALMDESDDS
+GAGAFTDSL--------------TAEDI----REMLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AEE---------------------------------------------
+>TT9_LFPAFLNI_02038
+MATADSGDVLPHLRTEAIRAVVGPTSADRGFAVAASGAVGRLRYDAATGRLSASVQGTAPSPYRVQVQLQEAYDDAAEDG
+AGALMEPVGGRCTCPVGTDCKHVAAALYQVVRLDADQALDDARRKLAEMVTTADALPAPAGRGHD-----GGGPAGLDA-
+PAADGAAPPPP-AGLDWRRVMEPLAGLH-GPRRVGTPPALAIGVELVAESSRNAFQQWGPATAGEEQVREGRPLYVTVRP
+LKRGAKGTWIKGGLTWKAFQFPRAEFAPAQERAMRLIWRQVQAEDSYPGDAWFGLHVFDSPRIWQLLAEAREVGVELVPL
+GLLTDVVLEAPVAVGLDVTRAPDGGLDVAPSLDPA---------------PPGLGLSGVHAVGGIGFYRV-ELTDEEAVL
+HLIPAARPVPEAVQQLVLAGGPVRVPAADREEFLGRIYPRLRGALPVTSGDASVELPEFEPPVLRLRADFRPGHELVLRW
+SWLYFDPPRELGLDAGGDPLRDTRHEDAVLRAVAELWPRAGRAEEQVLEGVGAARFSEQVLPLLQRADHVRVDVTGDRPD
+YRELKAAPRIEVGTKATQNDWFDLGVQVSVDGHVLPFVELFTALVQGRTTLILADGSYLGLDHPAFDRLRALLSEAATLQ
+EWTPEHTPVSRHQVGFWEDLKELADEVDEDPEWTAAVGRLAAVERLPEAPRPAGLKADLRPYQEEGLRWLAFLWEQDL-G
+GILADDMGLGKTVQTLALFAHARQARPERPPFLVVAPSSVVSVWAAEA-EKFTPDLDVRVLDTTTRKRGTAVADEVAG--
+ADVVVTSYTL-LRIDAGQYGGLDWGGVVFDEAQFLKN----RAAKVHTVARDLRAPFR-LAITGTPMENSLSDLWALLGV
+VVPGLFPSHRRFRETYVTPIETGGDP---ERMAALRRRVRPFMLRRSKEL---VAKDLPSKQEQILQVELEPA--HRKLY
+DRV---LQRER----------------RKVLGL----------------------------LGDMDGNRFTIFTSLT---
+-----------------------------------LLRMLALAPQIVDDQYASVPSSKLERFLDDLTEVIGEGHRVIVFS
+QFTSFLRVIAEEL-------------------DHLEIEHAYLDGSTRG-----------RADVIRGFR-EGEAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAEAQAVDRAHRIGQERTVMVYRLVSEGTI-EEKVLELQRRKAELFGALMDESDDS
+GAGAFTDSL--------------TAEDI----REMLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AEE---------------------------------------------

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000103.fa

@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00685
+MSHVTRGGTMTDTTTARPMRPTHHDDDPPVRGIGHLRHPVVSGGLI----DGAMAAQGLL
+ASPRPD------------------------------------------------------
+------------------------------------------------------------
+------------------------------
+>KBS0714_MOLHKGIG_02093
+---------MTDTTTARPKRPAHRDDGPPVRGIGHLRHPAVSGGLIGVIGGGAFLFGGIA
+GLPAEHRATLRGIAISLISFTLVVVLLRRRMLPTVPTPARGALRVYGIAVVAMLAFLPVT
+RLVALALDAPTAQIALVAAVVGGHFLPFARAFQAPVFWWIGGAMAALGLAGAALAALGDP
+VAGPAGAAAAGVAMLVIVAAQGLLASPRQD
+>KD337_NAFOICDF_00555
+MER----------------------DSTHARGIAHPMHPAVLGAVVGMVGGSLFMLLSRP
+ELPFPWPTVTLVAWIALLAAAAWAVFLAPRRLRDVGAPSRHAGPIYGLSVLGMVALIIAS
+PHLVRALGIEAAQPAVVVMAVGLHFIPFASAFGARVFAWLGGSLTAIGLAGVIAAAVVGA
+PAGAVAAVLAGAAMLAFLAVDARRGA----
+>KD337_NAFOICDF_00601
+MSHVMRGGTMTATTTARPMRPTHHDDDPPVRGVGHLRHPVVSGGLI----DGAMAAQGLL
+ASPRQD------------------------------------------------------
+------------------------------------------------------------
+------------------------------
+>SA211_MHAAABBN_01800
+MSHVMRGGTMTDTTTARPMRPAHFDDDPPVRGIGHLRHPVVWGGLIGVVGGGAFLFGGIA
+GLPAEHQGTLRGSAIALIGFTLVVVLLRRRVLPAVQAPARGA------------------
+-----STGSPSSR------------------------CW---------------------
+-----------------------RSSP---
+>SA211_MHAAABBN_01801
+------------------------------------------------------------
+----------------------------------------------------MLALLPVT
+RLVALALDAPTAQIALVAAVVGGHFLPFARAFQAPVFWWIGGAMAVLGLAGAVVAVLGDP
+VAGPAGAAEAGAAMLVIVAAQGLLASPRQD
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000107.fa

@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00771
+MA----------EFDGKVALVTGGGSGIGEACAKDLARGGAKVLVTDINLE-AAERVAEE
+IKADGGEAAAYRLDSASPDDNEKAVAFAEETFGALHLAVNNAGIGAGTEPAGELKIEDWD
+RVIDIDLNGVLYGMRHQLPAMERAGGGAVVNMASIHGTVATGLGASAYTAAKHGVVGLTK
+QAGVDYGPRGVRVNAVGPGYIETPLLAELPDEVHEALVAKHPIGRLGRAEEVAHLVSFLL
+SDKASFLTGAYYLVDGGY-TAP
+>AS2_ACLBLIBL_01745
+MADQTTPTAADAKASGRSVLVTGGNRGIGLAIARAFAANGDRVAVTSRSGE-GPEGVL-A
+VRADVTDAASV----------DAAFREVEEAHGPVEVLVANAGI-TNDQLLLRMSEEDFT
+SVVDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLVGMAR
+SITRELGARGVTANVVAPGYIDTEMTQSLGEDLKAQYKKSIPAGRFAQPEEVADVVRWLA
+SDEAAYISGAVIPVDGGLGMGH
+>KBS0714_MOLHKGIG_01147
+MADQTTTPTADAQAAGRSVLVTGGNRGIGLAIARAFAANGDRVAITSRSGE-GPEGVL-A
+VRADVTDAASV----------DAAFREVEEVHGPVEVLVANAGI-THDQLLLRMSEDDFT
+SVIDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLVGMAR
+SITRELGARGVTANVVAPGYIDTEMTQSLDDELKAQYKTSIPAGRFAAPEEVAGVVRWLA
+SDEAAYISGAVIPVDGGLGMGH
+>KD337_NAFOICDF_01639
+MAEQT-------EPGGRSVLVTGGNRGIGRAIAEAFLANGDRVAVTSRSGEGGPEGAL-T
+VAADVTDAASV----------DAAFRAVEEAHGPVEVLVANAGV-TNDQLLLRMSEDDFT
+SVVDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLIGMAR
+SITRELGARGITANVVAPGYIDTEMTRSLDEELKAQYRKSIPAGRFAEPEEVADVVRWLA
+SPGAGYVSGAVIPVDGGLGMGH
+>SA211_MHAAABBN_00866
+MADQTTTPAADAQAAGRSVLVTGGNRGIGLAIARAFAAHGDRVAITSRSGE-GPEGVL-A
+VRADVTDAASV----------DAAFREVEEVHGPVEVLVANAGI-THDQLLLRMSEDDFT
+SVIDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLVGMAR
+SITRELGARGVTANVVAPGYIDTEMTQSLDDELKAQYKTSIPAGRFAAPEEVAGVVRWLA
+SDEAAYISGAVIPVDGGLGMGH
+>TT9_LFPAFLNI_01097
+MADQTTTPAADAQAAGRSVLVTGGNRGIGLAIARAFAAHGDRVAITSRSGE-GPEGVL-A
+VRADVTDAASV----------DAAFREVEEVHGPVEVLVANAGI-THDQLLLRMSEDDFT
+SVIDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLVGMAR
+SITRELGARGVTANVVAPGYIDTEMTQSLDDELKAQYKTSIPAGRFAAPEEVAGVVRWLA
+SDEAAYISGAVIPVDGGLGMGH
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000110.fa

@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00803
+M---TETPDTSRASVPAVVGVLGGGRMGGGIAHAFLTSGSSEVVVVERDPQSAEAAKERI
+ESDLAASLERGKLDGD-LDVWAERLTVSVD-RADFARCDLVVEAVFEDMQVKIDALTDVE
+SHLREDAWLATNTSSLSVDEIATHLRRPERFCGLHYFNPVPASKLVEVVIGAQTGDELKA
+LTTEWVRGLGKTPVVVK-DAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDYSK
+G
+>KBS0714_MOLHKGIG_02018
+MTDQQHTPDTVPSSVPAVVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPQSAEAAKERI
+EADLAASLERGKIDGD-LDEWAQRLTVSVD-RADFARCDLVVEAVFEDMQVKIDALTDVE
+AHLREDAWLASNTSSLSIGEIATHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQA
+LSTEWVRGLGKTPVVVK-DAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDY--
+R
+>KD337_NAFOICDF_00762
+MTENQQT----TGSVPSIVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPQSAEAAQERI
+VADLAASLERGKIDGD-LNVWAQRLTVSVD-RTDFARCDLVVEAVFEDMQVKIEALTDVE
+AHLREDAWLASNTSSLSIDEIATHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQA
+LSTEWVRGLGKTPVVVK-DAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDY--
+R
+>SA211_MHAAABBN_00095
+MGQTQK------------VAVIGAGAMGSQIAMLAAMAG-CQTTMVDVDQERLDAARDQV
+LQTAQRQAERGRLEADAVEQAAARLTTEPDLAAAVAEADVVVEAIIEDLEAKRDLFAQLG
+EHTRPDTILATNSSSIVSSRLA-QIPHPERVCNMHFFNPALVMRLVEVVGGDHTSQKTIE
+TVKALAERMGKTPVVVRQEIFGFIANRIVAAIFDEAISLYEQGIASAEDIDTAVTHGLGH
+PIGPFALLDLTGIDVNVGIKRLEAQETGDPSRGPSQTLLDLMAQGRLGRKTGHGFYEYGD
+R
+>SA211_MHAAABBN_01727
+MTDQQHTPDTAPSSVPAVVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPRSAEAAQERV
+ESDLAASLDRGKIDGD-LDEWAQRLTVTVD-RADFARCDLVVEAVFEDMQVKIEALTDVE
+AHLREDAWLASNTSSLSIDEIATHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQA
+LSTEWVRGLGKTPVVVK-NAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDY--
+R
+>TT9_LFPAFLNI_01955
+MTDQQRTPDTAPSSVPAVVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPQSAQAAKERI
+EADLAASLERGKIDGD-LDEWAQRLTVSVD-RADFARCDLVVEAVFEDMQVKIEALTDVE
+AHLREDAWLASNTSSLSIDEIASHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQA
+LSTEWVRGLGKTPVVVK-DAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDY--
+R
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000111.fa

@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_00806
+-MAR------YITRNPATGETLEEFAELPASEVESVIERADTAYRAWRERPVAERAAVLA
+RAADLYEERAEQLAQDVTTEMGKPISAARGEMKTVAGIFRYYAEQGPAMLEHERIEVAGG
+GTAYVRRDPVGVLLGVMPWNFPHYQIARFAAPNLLLGNTMILKHAGICARSALNVEQLLL
+DAGLPEGAFVNAFIGHEAVAQIVADERVQGVSLTGSDKAGQIIGEQAGRNVKKAVLELGG
+SDPFIVAGDADVARAAKDAVSGRCVNSGQTCTSSKRFIVVEEHYEQFLSAFVEGMRAVPH
+GDPTD-ESTVVGPLSSPEAVQEVHELVQDAVAHGATLHVGGEPGEGP---GAYYPPTVLT
+DVDESARAFREEIFGPVAVVHRVKDLDAAIELANDSPYGLSSSVYTTSAEVAEEVSARLE
+TGMVWVNSTSKSSAELPFGGVKRSGIGRELGTLGIEEFANHKLVRSPEGLIGA
+>AS2_ACLBLIBL_02161
+-MTTTSASQGYRTINPATGELLKSFDTATDQQIADALDASQAAYEQWSQKSVAERAAVVK
+RISELLAERSKDIATLITTEMGKSLGAAVGEVRFGAQIFAYYADNAEELLADQPIKDFSG
+QEAFVERLPLGPLLGIMPWNFPVYQVARFVAPNLILGNTILLKHSEINPQTAALLEDLFR
+EAGLPEGVYQNLYATHEQVSTIIADPRVQGVSLTGSERAGAAVAEQAGRHLKKVVLELGG
+SDPYIVLSAPDARQAARDALATRMGNWGQACNSNKRMIVMEDLYDDFVDELVQRASAMKA
+ADPTSRDEDVYGPLSSESAADGLAEQIKAAKDAGATVHVGGERVSGPAGEGFYVSPAVIT
+DVDQDNPAYTQELFGMAAVVYKVSSPEEAVALANDSQYGLGGAVFSTDLDEARRVADQLE
+VGMANVNLPSAAGANLPFGGVKRSGFGRELGPFAVDEFANKRLYAVKGPLQG-
+>KBS0714_MOLHKGIG_00769
+-MTTTSASQGYRTINPATGELLKSFDNATDQQIADALDASQAAYEQWSRKSVAERAAVVK
+RISELLAERSKDIAAVITTEMGKSLGAAVGEVRYGAQIFGYYADEAEELLADQPIKQFSG
+QEAFVQRLPLGPLLGIMPWNFPVYQVARFVAPNLVLGNTILLKHAEINPQVAQLLEELFT
+EAGLPEGVYQNVFATHDQISTIIADPRVQGVSLTGSERAGAAVAEQAGRHLKKVVLELGG
+SDPYIVLSAPDARAAARDALATRMGNWGQACNSNKRMIVMEDLYDDFVDELVQRSSEMKP
+GDPTSRDADVYGPLSSESAADGLAEQIAEAKQAGATVHVGGERTSGPEGEGFYVSPAVIT
+DVDQENPAYTQELFGMASVVYKVSSAEEAVALANDSQYGLGGAVFSTDLDEAKRVADQLE
+VGMANVNLASAAGANLPFGGVKRSGFGRELGPLALDEFANKRLYAVQGPLEG-
+>KD337_NAFOICDF_02057
+MTTTTSASQGYRTINPATGELIKQYDNATDQQVQDALAASQAAYEQWAATTVAERAGVVK
+RISELLAERSKDIAALITTEMGKSLGGAIGEVRFSAQIFAYYADNAEELLADQPIKDFSG
+QEAFLEKLPLGPLLGVMPWNFPVYQVARFAAPNLVLGNTILLKHSEINPQTAQLLQDLFE
+EAGLPAGVYQNLYATHDQISTIIADPRVQGVSLTGSERAGASIAEQAGRHLKKCVLELGG
+SDPYIVLSAPDARQAAREALQTRMGNWGQACNSNKRMIVMEDLYDEFVDELVKQSTALKP
+GDPTSRDEDVYGPLSSESAADGLAAQIRDAKEAGATV-VGGERLSGPSGEGFYVSPAVIT
+DVDQENPAYSQELFGMASVVYRVSSAEEAVALANDSQYGLGGAVFSTDLDEAKRVAEQLE
+VGMANVNLPSAQGANLPFGGVKRSGFGRELGPFAVDEFANKRLYAVKGDLQG-
+>SA211_MHAAABBN_00499
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------MQGVSLTGSERAGAAVAEQAGRHLKKVVLELGG
+SDPYIVLSAPDARAAARDALATRMGNWGQACNSNKRMIVMEDLYDDFVDELVQRSSAMKP
+GDPTSRDADVYGPLSSESAADGLTEQIAAAKEAGATVHVGGERVSGPEGEGFYVSPAVIT
+DVDQENPAYTQELFGMAAVVYKVSSAEEAVALANDSQYGLGGAVFSTDLDEAKRVADQLE
+VGMANVNLASAAGANLPFGGVKRSGFGRELGPMAVDEFANKRLYAVQGPLEG-
+>TT9_LFPAFLNI_00733
+-MTTTSASQGYRTINPATGELLKSFDNATDQQIADALDASQAAYEQWSRKSVAERAAVVK
+RISELLAERSKDIAAVITTEMGKSLGAAVGEVRYGAQIFGYYADEAEELLADQPIKQFSG
+QEAFVQRLPLGPLLGIMPWNFPVYQVARFVAPNLVLGNTILLKHAEINPQVAQLLEELFT
+EAGLPEGVYQNVFATHDQISTIIADPRVQGVSLTGSERAGAAVAEQAGRHLKKVVLELGG
+SDPYIVLSAPDARAAARDALATRMGNWGQACNSNKRMIVMEDLYDDFVDELVQRSSAMKP
+GDPTSRDADVYGPLSSESAADGLTEQIAAAKEAGATVHVGGERVSGPQGEGFYVSPAVIT
+DVDQENPAYTQELFGMAAVVYKVSSAEEAVALANDSQYGLGGAVFSTDLDEAKRVADQLE
+VGMANVNLASAAGANLPFGGVKRSGFGRELGPMAVDEFANKRLYAVQGPLEG-
+ 

Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000113.fa

@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_00875
+MTLAIVVSVLAVLLLIVGVVGTVYPILPGSMLILVTAVAWAWILGSGASWTFGLLAAGLA
+VAGMSASAVLTGRRLLRERVTRGPIAAGVVGAIVGFFVIPVVGLFIGFAVGLFGSQWART
+KDARAALASSWGALKAMGLGMLVELGCAMLALVSVGVGILVHFV-F
+>KBS0714_MOLHKGIG_01983
+MTPA-LISLVAVLLLLVGLVGTVYPVLPGSLLNLVTALGWAALLGSPASWTFGVIAAGLA
+VAGLSASAVLTGRRLRRERVTRGPILWGVAGAAVGFFVIPVVGLFLGFAVGLFASQWART
+RDARAALSSSIGALTAMGVGMLVEFCCALGSLTAVGVGALVHGLTA
+>KD337_NAFOICDF_00810
+MTPA-LISLVAVLLLLVGLVGTVYPVLPGSLLNLVTALGWAALLGSPASWTFGLIAAGLA
+VAGLSASAVLTGRRLRRERVTRGPILWGVAGAAVGFFVIPVAGLFLGFAVGLFASQWART
+RDARTALSSSIGALTAMGVGMLVEFCCALGSLTAVGVGALVHGVTA
+>KD337_NAFOICDF_00823
+MTFAILVSLLAVLLLIVGLVGTVYPVLPGSVLNAVVSLAWAWVLGSVASWTFGLIACAFS
+IAGMSASAALTGRRLVKERIPRGPILTGVAAAVVGFFVIPVVGVFVGFAAGLFGAEWARR
+RDARAALTSSWGALKAMGLGMLVEFGCAMVALASVGAGALVHVLSL
+>SA211_MHAAABBN_01677
+MTPA-LISLVAVLLLLVGLVGTVYPVLPGSLLNLVTALGWAALLGSPASWTFGVIAAGLA
+VAGLSASAVLTGRRLRRERVTRGPILWGVAGAAVGFFVIPVVGLFLGFAVGLFASQWART
+RDARAALSSSIGALTAMGMGMLVEFCCALGSLTAVGVGALVHGLTA
+>TT9_LFPAFLNI_01909
+MTPA-LISLVAVLLLLVGLVGTVYPVLPGSLLNLVTALGWAALLGSPASWTFGVIAAGLA
+VAGLSASAVLTGRRLRRERVTRGPILWGVAGAAVGFFVIPVVGLFLGFAVGLFASQWART
+RDARAALSSSIGALTAMGVGMLVEFCCALGSLTAVGVGALVHGLTA
+