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| # SmartWilds — supplemental material | |
| > **Camera-trap update (2026-11-08).** The legacy camera counts, | |
| > Event hierarchy, first-generation Tree-of-Life method statements, and | |
| > camera detection-arrival rows in this historical supplement do not describe | |
| > the current camera release. The canonical camera release has 72,775 | |
| > original-SAM3-geometry Occurrences, 19,785 camera Events, a 235,778-image | |
| > inventory, and 70,466 Campaign-2 operational-inference arrivals. Its | |
| > combined multimodal table has 401,602 Occurrences and 22,242 Events. See | |
| > [`CAMERA_TRAP_RELEASE.md`](CAMERA_TRAP_RELEASE.md) for the | |
| > release-facing scope and provenance. The historical sections remain for | |
| > auditability and must not be used as current camera-release statistics. | |
| Supplemental material for the SmartWilds | |
| datasets. | |
| This contains the full data inventories details, the timestamp-repair methods, | |
| the standards crosswalk, the field dictionary, the arrival statistics, and the | |
| complete defect inventory. | |
| Last updated: 2026-11-10. | |
| Release: SmartWilds release build 2026-10-22, camera tables updated 2026-11-08. | |
| It supersedes the 2026-07-24 integration pass. Paths such as | |
| `processing_output/...` are relative to the project archive; the released files | |
| are in the per-modality datasets of the [SmartWilds collection](https://huggingface.co/collections/imageomics/smartwilds). | |
| --- | |
| ## S1. Extended glossary | |
| | Term | Source | Meaning in this release | What it is *not* | | |
| |:--|:--|:--|:--| | |
| | Event | Darwin Core | A sampling act with a date, location, protocol, and `parentEventID`. Five levels in use: `Project`, `SensorDeployment`, `AudioRecording`, `MediaEvent`, `ObservationSession`. | Not an arrival in a stream. One Event can contain 10⁵ arrivals. | | |
| | Occurrence | Darwin Core | One organism record at a place and time, linked by `eventID`. Usually one detection crop. | Not an individual animal. Adjacent drone frames yield many Occurrences of the same animal. | | |
| | `eventType` | Darwin Core | The level of the hierarchy a row occupies. | Not the modality; modality is carried by `parentEventID` and `modality_type`. | | |
| | `basisOfRecord` | Darwin Core | `MachineObservation` for every detector-derived row; `HumanObservation` for citizen-science and text records and for the 12 human-added drone starling boxes. | Not a quality statement. See `identificationVerificationStatus`. | | |
| | `identificationVerificationStatus` | Darwin Core | Vocabulary differs by table. Post-triage camera traps: `human-reviewed`, `machine-resolved`. Drones and bioacoustics: `unverified`, `validated`, plus `human-supported; limited-resolution` for the drone starling supplement. Citizen science and text: `verified by expert`. Counts in S9.3. | Not a confidence score. `machine-resolved` and `unverified` are both machine labels; a `validated` or `human-reviewed` record was reviewed by a person. | | |
| | `dataGeneralizations` | Darwin Core | States whether a coordinate is an observed position, a sensor position, a projected estimate, or a platform-telemetry fallback. | Not a precision estimate; see `coordinateUncertaintyInMeters`. | | |
| | `informationWithheld` | Darwin Core | Records where locality precision was reduced for sensitive taxa. | — | | |
| | Sampling effort | Humboldt ext. | Acquisition quantity actually expended, per modality: camera observation-days, recorder-hours, flight-minutes, visitor sessions. | Not comparable across modalities. Not a detection count. | | |
| | Arrival | systems | One item entering a processing stream. Two layers measured: *acquisition* (image capture, WAV file) and *detection* (an Occurrence). | Not a Darwin Core Event. | | |
| | Deployment | systems | One physical installation of one device at one site over one interval. | Not a device. One device yields several deployments across campaigns. | | |
| | Duty cycle | systems | Fraction of wall-clock time a device was *scheduled* to acquire. | Not uptime. A device can be on-schedule and dead. | | |
| | Detection | systems | A model output: a SAM3 box, a BirdNET hit. | Not an identification. | | |
| | Identification | Darwin Core | A taxonomic assignment with a stated verification status. | Not implied by a detection. | | |
| | `locationID` | Darwin Core | Stable identifier for a **fixed** sensor position or a drone session origin. Null for locality-only records. | Not a comparable spatial sampling unit across modalities. | | |
| | Coverage | systems | Distinct (date, hour) pairs containing ≥1 Occurrence, per modality. | Not area surveyed. Not detection probability. | | |
| | Campaign | this release | One field deployment interval. Three: C1 Jun 30–Jul 3, C2 Aug 4–28, C3 Sep 8. | Not a Darwin Core term. | | |
| --- | |
| ## S2. Camera-trap deployment inventory | |
| Four camera models, HFOV 55–120°. Configuration varied in capture mode, | |
| resolution, burst length, PIR sensitivity, and inter-trigger delay. Every one of | |
| these is a workload multiplier (S2.3). | |
| ### S2.1 Campaign 1 — Jun 30 to Jul 3, 2025 | |
| | Deployment | Site | Model | HFOV | Facing | Mode | Photo | Video | PIR | Images | Notes | | |
| |:--|:--|:--|--:|:--|:--|:--|:--|:--|--:|:--| | |
| | TW01-CT02 | Nomad Ridge E | GardePro T5NG | 56.5° | SE (135°) | Hybrid | 4 MP, 3-burst | 1080p 10 s MP4+audio | High | 7,811 | Hourly timelapse, info strip on | | |
| | TW02-CT03 | Nomad Ridge W | GardePro A3 | 63° | SW (225°) | Photo+Video | 8 MP, 3-series | 1080p 10 s AVI+audio | High | 39 | Early battery death; 55 files total on card | | |
| | TW03-CT01 | Pasture D Feeder | GardePro T5NG | 56.5° | S (180°) | — | — | — | — | 6,661 | Near salt lick; config not documented | | |
| | TW04-CT04 | Lake Trail | Trail Camera G600 | 120° | NW (315°) | Photo+Video | 8 MP, 5-burst | 1080p 10 s MP4+audio | High | 570 | Images inverted (mount orientation) | | |
| ### S2.2 Campaign 2 — Aug 4 to Aug 28, 2025 | |
| | Deployment | Site | Model | HFOV | Facing | Mode | Photo | Video | Images | Notes | | |
| |:--|:--|:--|--:|:--|:--|:--|:--|--:|:--| | |
| | TW01-CT02 | Nomad Ridge E | GardePro T5NG | 56.5° | SE (135°) | Photo only | 4 MP, 3-burst | — | 26,573 | Removed Aug 11, relocated to dock | | |
| | TW02-CT01 | Nomad Ridge W | GardePro T5NG | 56.5° | SW (225°) | Photo only | 4 MP, 3-burst | — | 61,217 | Clock error; battery died Aug 18–25; 4 card clock states | | |
| | TW04-CT03 | Lake Trail | GardePro A3 | 63° | NW (315°) | Photo+Video | 8 MP, 3-burst | 1080p 10 s | 984 | Reset Aug 7; no data after Aug 25 | | |
| | TW06-CT04 | Zebra Shelter | Trail Camera G600 | 120° | NW (315°) | Photo+Video | 8 MP, 5-burst | 1080p 10 s | 40,907 | Battery reported 100% at retrieval (unusual) | | |
| | TW06-CT05 | Zebra Shelter (in) | Reveal Pro 3.0 | 55° | N (0°) | Photo+Video | 4K | 720p 10 s | 84 | Late deploy Aug 25–28 | | |
| | TW07-CT05 | Zipline Tower | Reveal Pro 3.0 | 55° | N (0°) | Photo+Video | 4K | 720p 10 s | **withdrawn** | People-only media were not uploaded; metadata only retained; deletion status unknown | | |
| | TW09-CT02 | Dock (left) | GardePro T5NG | 56.5° | S (180°) | Photo only | 4 MP, 3-burst | — | 90,834 | Largest deployment (38.5% of all images); relocated Aug 18; battery gap Aug 18–25 | | |
| | TW09-CT05 | Dock (right) | Reveal Pro 3.0 | 55° | SE (135°) | Photo+Video | 4K | 720p 10 s | 9 | Detection issues | | |
| | TW11-CT06 | Fence / lake | Reveal Pro 3.0 | 55° | NE (45°) | Photo+Video | 4K | 1080p 15 s | 89 | PIR level 9, 20 s delay, 1 bar cell service | | |
| **Totals:** 235,778 JPG + 5,113 video clips, 260 GB. 13 deployments, 12 retained. | |
| ### S2.3 Configuration as workload multiplier | |
| | Parameter | Range in deployment | Workload effect | | |
| |:--|:--|:--| | |
| | Burst length | 3 or 5 frames/trigger | Direct 3× or 5× multiplier on raw images per ecological event | | |
| | Capture mode | photo-only / photo+video / hybrid | Video adds a 10–15 s clip per trigger: large storage, frame-extraction compute | | |
| | Resolution | 4 MP / 8 MP / 4K | Bytes and per-image inference time | | |
| | PIR sensitivity | High, Level 9, motion-detect | Higher sensitivity → more triggers and more blanks | | |
| | Inter-trigger delay | 0 / 10 / 20 s | Longer delay suppresses repeat triggers, lowering effective arrival rate | | |
| | HFOV | 55°–120° | Wide-angle covers more area at lower pixel density per animal | | |
| | Cellular uplink | Reveal Pro 3.0 only | The only device in the deployment that could participate in near-real-time coordination | | |
| | Timelapse | TW01-CT02 C1 only | Adds a scheduled arrival stream independent of PIR | | |
| --- | |
| ## S3. Acoustic recorder inventory | |
| All units: Wildlife Acoustics Song Meter Micro 2, 48 kHz. | |
| 10 deployments across 6 sites. Duty cycle, not deployment duration, determines | |
| volume: uncompressed 48 kHz stereo WAV ≈ 33 MB/minute. | |
| | Deployment | Site | GPS | Schedule | Duty cycle | Raw WAV | Events | GB | | |
| |:--|:--|:--|:--|--:|--:|--:|--:| | |
| | **C1** | | | | | | | | | |
| | TW05-SM01 | Lake Trail Gate O | 39.83537, −81.73842 | 5-min clips hourly (**config error** — intended 1 hr sunrise + sunset) | 8.3% | 144 | 144 | — | | |
| | TW06-SM03 | Zebra Shelter | 39.83518, −81.73087 | 5 min/hr, 24/7 | 8.3% | 77 | 77 | — | | |
| | TW07-SM02 | Zipline Tower | 39.83288, −81.73455 | 1 hr sunrise + 1 hr sunset | ~8% | 12 | 12 | — | | |
| | TW08-SM04 | Fence w/ vegetation | 39.82900, −81.74378 | 5 min/hr, 24/7 | 8.3% | 78 | 78 | — | | |
| | | | | | | **311** | **311** | **6.0** | | |
| | **C2** | | | | | | | | | |
| | TW02-SM04 | Nomad Ridge Shelter | 39.82957, −81.73295 | 5 min/hr | 8.3% | 659 | 581 | 26.1 | | |
| | TW05-SM06 | Lake Trail Gate O | 39.82866, −81.73758 | sunrise–sunset | ~50–60% | 100 | 96 | 16.6 | | |
| | TW06-SM05 | Zebra Shelter | 39.82870, −81.73756 | 15 min/hr | 25% | 508 | 508 | 21.8 | | |
| | TW07-SM02 | Zipline Tower | 39.82891, −81.74392 | sunrise–sunset | ~50–60% | 339 | 339 | 56.4 | | |
| | TW08-SM03 | Fence w/ vegetation | 39.82892, −81.74392 | sunrise–sunset | ~50–60% | 341 | 341 | 56.7 | | |
| | TW09-SM01 | Dock | 39.83418, −81.73783 | sunrise–sunset (deployed Aug 14) | ~50–60% | 195 | 195 | 32.4 | | |
| | | | | | | **2,142** | **2,060** | **210** | | |
| | **Total** | | | | | **2,453** | **2,371** | **216** | | |
| **Raw-WAV reconciliation.** Of the 2,453 WAV paths on disk, 2,371 are | |
| `AudioRecording` Events: 2,307 with BirdNET detections and 64 on which BirdNET | |
| ran but detected nothing (Events with no Occurrences). The other 82 are not | |
| recordings of their own: 78 are Campaign-1 files copied into the Campaign-2 | |
| TW02-SM04 directory during transfer, and 4 TW05-SM06 files produced no BirdNET | |
| result (three 3.9–22.0 s fragments and one unreadable file). Every path is | |
| classified in `data/recordings.csv` of the bioacoustics dataset. | |
| Note that TW02-SM04 produced **more than twice the files** of TW07-SM02 but | |
| **less than half the bytes** — the clearest illustration that duty cycle and | |
| file count are independent axes. | |
| --- | |
| ## S4. Drone platform and session inventory | |
| | Platform | Campaigns | Video | Telemetry format | Sessions | | |
| |:--|:--|:--|:--|--:| | |
| | Parrot Anafi 4K | C1 (Jul 1, 3), C2 (Aug 11, 18, 25) | 4K MP4 | Parrot JSON / GUTMA DX | 10 (+3 telemetry-only) | | |
| | DJI (unspecified) | C2 (Aug 11) | 1080p MOV | CSV, GPS + battery, 10 Hz | 1 | | |
| | DJI Air 2 | C3 (Sep 8) | 4K MP4 | Airdata CSV | 4 | | |
| **39** raw videos and **39** `MediaEvent` rows; one MediaEvent (`VID_001`) | |
| has zero Occurrences because it was intentionally excluded after review. | |
| **15** video-bearing `SensorDeployment` flight-session Events. Three more | |
| Aug 25 Parrot directories hold telemetry but no video and are not sampling | |
| Events. 90 GB total. | |
| Three platforms produced three telemetry schemas with different field names, | |
| units (feet vs. metres for altitude), and gimbal-angle conventions. Fields | |
| consumed by the projection script, with their per-platform sources: | |
| - platform GPS — `latitude_y` / `longitude_y` | |
| - AGL height — `height_sonar(feet)` when available, else `altitude (m)` / `altitude_m` | |
| - heading — `gimbal_heading(degrees)` or `compass_heading(degrees)` | |
| - pitch — `gimbal_pitch(degrees)`, with a configurable fallback when near-level | |
| - FOV — approximate per-platform constant | |
| --- | |
| ## S5. Camera-trap timestamp repair, in full | |
| 235,778 images; 0 unmapped; 0 flagged for review. 18 correction methods. | |
| ### S5.1 Raw timestamp source | |
| | Source | Images | Share | | |
| |:--|--:|--:| | |
| | Filename | 193,096 | 81.9% | | |
| | EXIF | 42,500 | 18.0% | | |
| | OCR of burned-in bottom overlay | 179 | 0.08% | | |
| | Manual read of bottom overlay | 3 | 0.001% | | |
| ### S5.2 Final confidence | |
| | Confidence | Images | Share | Meaning | | |
| |:--|--:|--:|:--| | |
| | high | 105,488 | 44.7% | Verified correct, or anchored to a logged service event | | |
| | medium | 130,290 | 55.3% | Anchored interpolation assuming a constant clock rate — **untestable without a second anchor** | | |
| ### S5.3 All 18 correction methods | |
| | Method | Images | Pattern | | |
| |:--|--:|:--| | |
| | `aug_tw09_ct02_sd23_correct_after_move` | 59,568 | verified correct | | |
| | `aug_tw09_ct02_sd22_start_anchor` | 31,266 | per-card anchor | | |
| | `aug_tw06_ct04_sd02_start_anchor` | 27,734 | per-card anchor | | |
| | `aug_tw01_2025_clock_offset` | 26,558 | constant offset | | |
| | `aug_tw02_actual_august_clock` | 17,301 | verified correct | | |
| | `aug_tw02_sd01_sep_clock_anchor` | 17,262 | per-card anchor | | |
| | `aug_tw02_sd01_2023_clock_anchor` | 13,689 | constant offset (**clock reporting 2023**) | | |
| | `aug_tw06_ct04_initial_start_anchor` | 13,173 | per-card anchor | | |
| | `aug_tw02_sd11_sep_clock_anchor` | 12,965 | per-card anchor | | |
| | `june_tw01_correct` | 7,811 | verified correct | | |
| | `june_tw03_correct` | 6,661 | verified correct | | |
| | `aug_tw04_sd02_start_anchor` | 696 | per-card anchor | | |
| | `june_tw04_start_anchor_inverted_images` | 570 | per-card anchor + inverted mount | | |
| | `aug_tw04_sd03_start_anchor` | 288 | per-card anchor | | |
| | `bottom_overlay_ocr` | 179 | OCR of in-frame timestamp | | |
| | `june_tw02_start_anchor` | 39 | per-card anchor | | |
| | `aug_tw01_2023_tail_clock_offset` | 15 | constant offset (**2023 tail**) | | |
| | `manual_bottom_overlay_read` | 3 | human read | | |
| Only **14,472 images (6.1%)** were accepted as recorded | |
| (`june_tw01_correct` + `june_tw03_correct`). The remaining | |
| **221,306 (93.9%)** required reconstruction. | |
| ### S5.4 Per-deployment repair summary | |
| | Dataset | Deployment | Location | Images | First corrected | Last corrected | Methods | | |
| |:--|:--|:--|--:|:--|:--|--:| | |
| | C1 | TW01-CT02 | Nomad Ridge E | 7,811 | 2025-06-30 12:18 | 2025-07-02 06:50 | 1 | | |
| | C1 | TW02-CT03 | Nomad Ridge W | 39 | 2025-06-30 12:34 | 2025-07-01 00:34 | 1 | | |
| | C1 | TW03-CT01 | Pasture D Feeder | 6,661 | 2025-06-30 13:06 | 2025-07-02 01:04 | 1 | | |
| | C1 | TW04-CT04 | Lake Trail | 570 | 2025-06-30 13:25 | 2025-07-03 16:56 | 1 | | |
| | C2 | TW01-CT02 | Nomad Ridge E | 26,573 | 2025-08-04 09:01 | 2025-08-10 10:15 | 2 | | |
| | C2 | TW02-CT01 | Nomad Ridge W | 61,217 | 2025-08-04 09:05 | 2025-08-18 09:07 | **4** | | |
| | C2 | TW04-CT03 | Lake Trail | 984 | 2025-08-07 10:38 | 2025-08-25 10:49 | 2 | | |
| | C2 | TW06-CT04 | Zebra Shelter | 40,907 | 2025-08-04 09:52 | 2025-08-26 15:35 | 2 | | |
| | C2 | TW06-CT05 | Zebra Shelter | 84 | 2025-08-25 15:09 | 2025-08-28 08:17 | 2 | | |
| | C2 | TW09-CT05 | Dock / Waterfront | 9 | 2025-08-11 10:18 | 2025-08-13 18:20 | 1 | | |
| | C2 | TW09-CT02 | Dock, then Nomad Ridge W after Aug 18 | 90,834 | 2025-08-11 10:27 | 2025-08-28 09:44 | 2 | | |
| | C2 | TW11-CT06 | Nomad Ridge W | 89 | 2025-08-18 09:00 | 2025-08-28 02:47 | 2 | | |
| Files: `processing_output/detections/drone_camera_analysis/camera_time_mapping/` | |
| — `camera_image_timestamp_map.csv` (per-image, 17 columns), | |
| `camera_timestamp_summary_by_camera.csv`, | |
| `camera_timestamp_summary_by_date.csv`, | |
| `camera_trap_timestamp_corrections.csv`, | |
| plus `.before_bottom_ocr` and `.before_ocr_interpolation` stages. | |
| --- | |
| ## S6. Drone ground projection | |
| **The campaigns were flown for population estimation and behavior, not | |
| geolocation.** Platform GPS localizes a detection to a known pasture, which is | |
| the operative spatial reference. Per-animal projection is an optional refinement | |
| provided for completeness; **no result in any of the three papers depends on | |
| it.** Monocular distance estimation from a moving platform to moving subjects is | |
| unreliable and is not established practice in aerial wildlife survey. | |
| | Status | Detections | Share | | |
| |:--|--:|--:| | |
| | `ok` (projected position available) | 247,340 | 77.9% | | |
| | `invalid_altitude` | 27,306 | 8.6% | | |
| | `missing_drone_gps` | 24,467 | 7.7% | | |
| | `horizon_ray` (camera near level) | 18,324 | 5.8% | | |
| | `out_of_range` | 122 | 0.04% | | |
| Method: convert the bbox bottom-center pixel to a camera ray, rotate by | |
| heading/pitch, intersect with a flat ground plane, project the offset from | |
| platform GPS. Dominant error sources: gimbal-pitch convention, terrain relief, | |
| altitude source, video stabilisation, FOV assumption, and whether bbox | |
| bottom-center is the animal's ground-contact point. | |
| Camera-trap coordinates use the pinhole method from | |
| <https://github.com/Imageomics/camera-trap-geolocation>: bbox height → range, | |
| bbox horizontal offset → bearing, projected from the camera GPS. Assumes flat | |
| ground and a uniform **0.9 m** target height — the dominant error term at a site | |
| holding animals from geese to Père David's deer. | |
| **Known analysis hazard.** An internal audit found a spatial figure that plotted | |
| projected animal positions and platform-telemetry positions together without | |
| distinguishing them: 15.66% of 292,106 plotted drone points were platform | |
| coordinates. The status field was present and correct; the script did not read | |
| it. The release carries that status on every drone Occurrence | |
| (`drone_georef_status` in `occurrenceRemarks`, `georef_status` in | |
| `detections.csv`); any analysis of drone coordinates must filter on it, and | |
| `examples/quickstart.py` shows the pattern. No automated check of downstream | |
| analyses ships with the release. | |
| --- | |
| ## S7. Standards crosswalk, in full | |
| | Required information | Standard | Status | | |
| |:--|:--|:--| | |
| | Taxon, rank hierarchy, vernacular name | Darwin Core | reused directly | | |
| | `eventDate`, `eventTime`, event hierarchy | Darwin Core | reused directly | | |
| | `decimalLatitude`/`Longitude`, `coordinateUncertaintyInMeters`, `geodeticDatum` | Darwin Core | reused directly | | |
| | `basisOfRecord`, `identificationVerificationStatus` | Darwin Core | reused as the automation boundary | | |
| | `dataGeneralizations`, `informationWithheld` | Darwin Core | reused for coordinate semantics and sensitive taxa | | |
| | `samplingProtocol`, `samplingEffort`, `sampleSizeValue`/`Unit` | Darwin Core + Humboldt | reused; effort reported per modality, never summed | | |
| | Inventory completeness, sampling scope | Humboldt | partially used | | |
| | Device model, sensor specification | SensorML concepts | re-expressed in platform tables (not SensorML-encoded) | | |
| | Derivation chain (raw → detection → identification) | PROV-DM concepts | re-expressed in remarks fields (not PROV-encoded) | | |
| | Platform, mission, annotation documentation | FAIR² Drones | dataset card template adopted | | |
| | Release principles | FAIR, CARE, TRUST | followed | | |
| | **Duty cycle and acquisition schedule** | — | **systems extension** (deployment `samplingProtocol` + config tables) | | |
| | **Trigger semantics** (PIR sensitivity, burst length, delay) | — | **systems extension** (config tables, S2.3) | | |
| | **Timestamp confidence and repair method** | — | **systems extension** (timestamp map, S5) | | |
| | **Per-detection coordinate provenance status** | — | **systems extension** (`drone_georef_status`, S6) | | |
| | **Typed missingness** | — | **systems extension** (S8) | | |
| | **Model identity, version, parameters, per-rank accuracy** | — | **systems extension** (S9) | | |
| | **Validator coverage and known gaps** | — | **systems extension** (S11) | | |
| The last six rows are the ones no standard we found expresses in a | |
| machine-readable way. We name them and use them consistently; we do not claim to | |
| have standardized them. | |
| --- | |
| ## S8. Missing data, broken down by type. | |
| | # | State | How it is computable | Example | | |
| |--:|:--|:--|:--| | |
| | 1 | Sensor active, nothing observed | Hourly bin inside a deployment window with no Occurrence | Most nocturnal camera bins | | |
| | 2 | Sensor inactive by schedule | Deployment-level schedule field | 5 min/hr recorders are off 91.7% of the time by design | | |
| | 3 | Sensor inactive by failure | Capture gap vs. logged deployment window, with cause | TW02-CT01 battery, Aug 18–25 | | |
| | 4 | Captured but not represented | Raw file inventory vs. Event table | 78 transfer-duplicate WAVs and 4 failed WAVs, each classified per path (S3) | | |
| | 5 | Metadata unusable for a purpose | Status/provenance column | 70,219 drone detections unprojectable (S6); until 2026-11-10, 41,524 drone Occurrences with a date but no time of day (S10, since recovered) | | |
| | 6 | Excluded in QC | Documented exclusion | People-only TW07-CT05 deployment excluded; one drone video reviewed and kept as a zero-Occurrence `MediaEvent` | | |
| States 1 and 2 have opposite implications for a coordination policy, which is | |
| why the schedule field is load-bearing and not documentation. | |
| --- | |
| ## S9. Models, parameters, and measured accuracy | |
| Manual annotation does not scale to sensor-network volume: human-reviewed | |
| labels are under 1% of the release and consumed the review capacity available. | |
| Semi-automated analysis is therefore the realistic condition, and we use | |
| current state-of-the-art models so that reported quality reflects what a | |
| practitioner adopting today's best tooling would obtain. | |
| Labels were produced in two generations, and the released tables carry both. | |
| The **first generation** labeled every SAM3 box with a BioCLIP Tree-of-Life | |
| taxon; it still describes the operational drone table and the merged | |
| cross-modal snapshot. The **second generation** (October–November 2026) | |
| replaced the camera-trap labels with embedding-based triage plus targeted | |
| human review (S9.1), and added a seven-video human-annotated drone reference | |
| set with a manual starling supplement (S9.2). | |
| | Stage | Model | Role | | |
| |:--|:--|:--| | |
| | Visual segmentation | SAM 3 | bounding boxes on camera-trap images and drone frames | | |
| | Visual classification, first generation | BioCLIP Tree-of-Life (TreeOfLife-200M) | top-1 taxon with full rank hierarchy, top-5 retained; operational drone labels | | |
| | Label triage, second generation | Resolve–Clear–Defer prototype triage over proposal embeddings | routes proposals to human review and resolves the rest by similarity to reviewed examples; operational camera-trap labels | | |
| | Acoustic detection | BirdNET | detections with frequency bounds and offset into the WAV | | |
| | Water/lake masking | SAM 3 | lake/water masks for habitat-association analysis | | |
| ### S9.1 Camera-trap labels (post-triage) | |
| Operational camera-trap Occurrences are SAM3 animal proposals labeled by | |
| Resolve–Clear–Defer triage. The triage selects proposals for human review and | |
| resolves the remainder by similarity to reviewed examples; `labelProvenance` | |
| records the outcome on every row, with the triage round where recovered. | |
| | `labelProvenance` | `identificationVerificationStatus` | Occurrences | | |
| |:--|:--|--:| | |
| | `triage_reviewed` | `human-reviewed` | 1,760 | | |
| | `triage_resolved` | `machine-resolved` | 70,808 | | |
| | `triage_forced_1nn` | `machine-resolved` | 201 | | |
| | **Total** | | **72,769** | | |
| Forced nearest-neighbour labels did not meet the triage confidence rules and | |
| may be wrong; exclude them unless label noise is tolerable. Box geometry is | |
| never edited (`geometryProvenance = SAM3`), even when the label was human | |
| reviewed. The table keeps only reviewed or resolved animal proposals: cleared | |
| and background proposals, boxes with a shorter side below 32 px, boxes | |
| overlapping the per-resolution ROI mask, and frames on the privacy exclusion | |
| manifest are excluded, so **an image without an Occurrence is not evidence | |
| that no animal was present.** Twelve taxa occur: milu (Père David's) deer, | |
| Przewalski's horse, Canada goose, Sichuan takin, trumpeter swan, killdeer, | |
| European starling, barn swallow, and the broad labels bird, butterfly, | |
| dragonfly, and insect. | |
| A separate **human-reviewed reference set** of 2,067 boxes on 198 selected | |
| ungulate and waterfowl images (881 Canada goose, 627 milu deer, 349 | |
| Przewalski's horse, 149 Sichuan takin, 61 trumpeter swan) is released beside, | |
| not inside, the Occurrence table. Taxonomy and geometry were both reviewed; | |
| 1,552 boxes share a SAM3 proposal's geometry and 515 are human edits or | |
| additions, and the set is not filtered by the 32 px or ROI rules. The images | |
| were selected for review, so the set is not a random or exhaustive test split. | |
| Triage label accuracy against this reference set has not yet been reported. | |
| <!-- TODO(confirm-stats): add triage label accuracy vs. the 2,067-box reference set, or cite the Resolve–Clear–Defer paper's figures. --> | |
| ### S9.2 Drone labels: operational table and seven-video reference set | |
| **Operational table.** The 318,203 machine drone Occurrences remain | |
| first-generation labels: a SAM3 box on every 15th frame with a top-1 BioCLIP | |
| Tree-of-Life taxon. The only measured accuracy for that labeler comes from | |
| human-annotated camera-trap subsets: | |
| | Analysis | Level | n | Precision | Recall | F1 / accuracy | | |
| |:--|:--|--:|--:|--:|--:| | |
| | SAM3 animal localization, camera traps | IoU ≥ 0.50 | 1,125 | 0.866 | 0.845 | 0.856 | | |
| | Tree-of-Life taxonomic assignment | class | 951 | | | 0.845 | | |
| | | order | 951 | | | 0.660 | | |
| | | family | 951 | | | 0.463 | | |
| | | genus | 951 | | | 0.322 | | |
| | | species | 951 | | | 0.271 | | |
| Usable statement: **class-rank labels support screening and triage; species-rank | |
| labels require curation; anything aggregating across ranks is uninterpretable.** | |
| A single headline accuracy anywhere in the 0.27–0.85 range would mislead. | |
| Corroborating evidence: the taxonomy crosswalk holds **12,577 label keys**, of | |
| which only **4** consist entirely of expert-verified records and 16 contain | |
| accepted names with mixed verification evidence. | |
| **Seven-video reference set.** Seven drone videos were human-annotated on | |
| 1,089 sampled frames for four focal classes, with onager observations | |
| excluded: `20250703_parrotanafi_1`, `_2`, `_5` (C1), `20250811_DJI_01`, | |
| `20250818_parrot_01`, `_02`, and `20250825_parrot_01` (C2). The corrected | |
| reference holds **27,159** four-class boxes (the localization audit below was | |
| run against 27,180 before the final manual review): Père David's deer 21,177, | |
| Sichuan takin 3,293, Przewalski's horse 2,066, Canada goose 644. It is | |
| delivered as COCO JSON with provenance, a frame-to-proposal mapping, and the | |
| audit files. <!-- TODO(release): confirm the path of the seven-video reference set in the drone dataset. --> | |
| SAM3 localization against the reference (35,312 proposals, one-to-one | |
| matching): | |
| | IoU | Precision | Recall | F1 | | |
| |:--|--:|--:|--:| | |
| | 0.25 | 0.758 | 0.985 | 0.856 | | |
| | 0.50 | 0.749 | 0.973 | 0.847 | | |
| | 0.75 | 0.740 | 0.961 | 0.836 | | |
| Per-class recall at IoU 0.25: Przewalski's horse 0.961, Père David's deer | |
| 0.985, Sichuan takin 0.993, Canada goose 1.000. Per-video recall at IoU 0.25 | |
| ranges from 0.958 (`20250818_parrot_02`) to 0.999 (`20250825_parrot_01`). | |
| Resolve–Clear–Defer prototype triage was then run over the full proposal pool | |
| (seed 3, density-moderated k-center acquisition, calibrated rule k = 5, | |
| τ_fg = 4, τ_bg = 4). It spent 100 proposals on calibration and 1,610 on | |
| expert review (4.6% of the 35,212-proposal evaluation pool), handled the | |
| remaining 33,602 automatically, and got 28,040 of those right: 79.6% of the | |
| evaluation pool, or 83.5% of the automatic decisions. Zero proposals were left | |
| deferred. | |
| Four-species classification on the 25,897 matched, unreviewed foreground | |
| instances (78.4% Père David's deer, so always-deer scores 0.784 accuracy): | |
| | Method | Precision | Recall | F1 | Accuracy | Macro-F1 | | |
| |:--|--:|--:|--:|--:|--:| | |
| | Prototype triage, automatic decisions only | 0.913 | 0.850 | 0.880 | 0.850 | 0.789 | | |
| | BioCLIP 2 zero-shot, four prompts | 0.167 | 0.167 | 0.167 | 0.167 | 0.230 | | |
| | Tree-of-Life, open-world, exact focal-taxon match | 0.947 | 0.037 | 0.071 | 0.037 | 0.188 | | |
| Species-wise recall for triage: Père David's deer 0.918, Przewalski's horse | |
| 0.687, Canada goose 0.590, Sichuan takin 0.551. The dominant automatic errors | |
| are wrong-species resolves into Père David's deer (takin 1,287, horse 595, | |
| goose 100) and 1,584 deer cleared as background. Read the table carefully: | |
| Tree-of-Life is evaluated open-world, so its 0.037 recall is exact top-1 | |
| recognition of a focal taxon under an unconstrained vocabulary, not animal | |
| recognition accuracy; BioCLIP 2 zero-shot always answers one of four prompts | |
| and has no background option; triage abstentions count as no prediction. All | |
| figures are proposal-level repeated observations from seven videos, not | |
| independent animals. | |
| **Manual European starling supplement.** Twelve human-added *Sturnus vulgaris* | |
| boxes on one frame (`20250703_parrotanafi_2` / `VID_002`, frame 1320) were | |
| appended to the drone Occurrence table on 2026-11-01 with | |
| `basisOfRecord = HumanObservation`, | |
| `identificationVerificationStatus = human-supported; limited-resolution`, and | |
| remarks stating that no SAM3 proposal, embedding, or triage decision was | |
| involved. | |
| The identification rests on limited pixels in a single frame and should be | |
| interpreted cautiously. These records are excluded from the 27,159-box | |
| reference, the localization audit, the triage calibration and evaluation, and | |
| the species-classification comparison; none of the numbers above change if | |
| they are dropped. The 12 rows were appended twice (24 rows, 12 distinct | |
| `occurrenceID`s) in both the drone and merged tables (defect 21, repaired in the release build). | |
| ### S9.3 Verification status distribution | |
| Counts are per table, because the vocabularies differ. The merged table below | |
| is the pre-update state (2026-11-01), before the camera rows were regenerated | |
| from the post-triage tables (defect 22, resolved 2026-11-08). | |
| Merged `occurrences_all_modalities.csv` as of 2026-11-01: | |
| | Modality | Status | Records | | |
| |:--|:--|--:| | |
| | Camera traps (first generation) | `unverified` | 223,203 | | |
| | | `validated` | 946 | | |
| | Bioacoustics | `unverified` | 9,960 | | |
| | Drones | `unverified` | 317,559 | | |
| | | `validated` | 644 | | |
| | | `human-supported; limited-resolution` | 24 (12 distinct records; defect 21) | | |
| | Citizen science | `verified by expert` | 622 | | |
| | Text data | `verified by expert` | 30 | | |
| | **Total** | | **552,988** | | |
| Post-triage camera-trap Occurrence table (the released camera dataset): | |
| | Status | Records | Share | | |
| |:--|--:|--:| | |
| | `machine-resolved` | 71,009 | 97.6% | | |
| | `human-reviewed` | 1,760 | 2.4% | | |
| `validated` = 946 camera-trap + 644 drone bird records from the curated | |
| goose/swan review set (added 2026-09-20). The 946 camera records belong to the | |
| first-generation camera table and are not carried into the post-triage | |
| Occurrence table; the 2,067-box reference set takes their role. | |
| `verified by expert` = all 622 citizen-science + 30 text-data records. | |
| A verification floor is one predicate: treat `unverified` and | |
| `machine-resolved` as machine labels; `human-reviewed`, `validated`, and | |
| `verified by expert` as person-reviewed; and `human-supported; | |
| limited-resolution` as person-reviewed but low confidence. | |
| ### S9.4 Why this must be published | |
| 1. A taxon string is not reproducible without the model that produced it. Two | |
| versions of the same classifier yield different taxa from the same image. | |
| 2. Published uncertainty is what makes labels **re-derivable**. Machine labels | |
| are a snapshot of a model, not ground truth. A release that keeps source | |
| media, detection geometry, model identity, and per-rank accuracy can be | |
| re-labeled when better models arrive and the label sets compared | |
| meaningfully. One shipping only final taxon strings cannot. | |
| 3. Aggregate accuracy hides the rank-dependent failure mode above. | |
| 4. Verification status must be per record, not per dataset — a README caveat | |
| cannot be filtered on. | |
| --- | |
| ## S10. Sentinel values: `nan` as a date string (repaired) | |
| In snapshot `darwin_core_latest_20260724`, the 2025-08-11 drone session carried | |
| `eventDate` = the literal string `nan` (a dataframe export of a missing value) | |
| and an empty `eventTime`. The QC summary reported `missing_eventDate=0` because | |
| the check tested for null/empty and `"nan"` is neither. | |
| | eventID | Occurrences | | |
| |:--|--:| | |
| | `TheWilds_2025_drone_20250811_DJI_01_DJI_0002` | 12,522 | | |
| | `TheWilds_2025_drone_20250811_parrot_01_P5190525` | 12,430 | | |
| | `TheWilds_2025_drone_20250811_parrot_01_P5190526` | 11,996 | | |
| | `TheWilds_2025_drone_20250811_DJI_01_DJI_0001` | 4,535 | | |
| | `TheWilds_2025_drone_20250811_parrot_01_P5180524` | 41 | | |
| | `TheWilds_2025_drone_20250811_DJI_01`, `..._parrot_01` (`SensorDeployment`) | — | | |
| | **Total** | **41,524** (13.1% of drone Occurrences) | | |
| **Repair (release build 2026-10-22).** `eventDate` was restored to | |
| `2025-08-11` from the flight identifier and marked as identifier-derived. | |
| Drones flew on 6 dates; the old count of 7 included the string `nan`. | |
| **Time recovery (2026-11-10).** The processed telemetry had no clock, but the | |
| five video containers carry a creation time. Whether an aircraft writes UTC or | |
| local time into that field is airframe-specific, so it was settled against | |
| flights with independently known times: the Parrot Anafi writes UTC (its | |
| 2025-08-18 video agrees with the telemetry file name to within 2 s), and the | |
| DJI Air 2 writes UTC (its 2025-09-08 video agrees with the telemetry's | |
| `datetime(utc)`). The 2025-08-11 Parrot videos therefore started at 09:12:43, | |
| 09:14:19, and 09:19:55 local. The DJI Mavic 3 videos read 10:29:39 and | |
| 10:31:32; read as UTC that would be 06:29, before anyone was on site, so this | |
| airframe wrote local time, which the telemetry export file name | |
| (`…_[10-29-13]`) and the field log also support. The field log places the | |
| Parrot flight at Stop 1 (Nomad Ridge, lake survey) and the DJI at the dock, | |
| Stop 5; the JotForm check-ins run 09:32 to 10:48. `eventTime` is now set for | |
| the 5 `MediaEvent`s and 2 flights (start/end intervals) and for all 41,524 | |
| Occurrences (video start + `frame_index` / fps, to the second). The DJI | |
| convention is inferred rather than verified, so those times should be read as | |
| minute-level. The record is `metadata/provenance/drone_time_recovery_20250811.json` | |
| in the drone dataset. | |
| The same audit found impossible coordinates (`nan`, longitude ≈ 500) on seven | |
| drone Events, now replaced with a validated static video location or left | |
| blank, and a missing study-root Event `TheWilds_2025`, now added. | |
| --- | |
| ## S11. Validation: checks run, and gaps | |
| ### S11.1 Original checks (snapshot `20260724`) | |
| - no missing event links (`eventID` resolves) | |
| - no missing taxon | |
| - no missing `eventDate` (presence only; this is how the `nan` dates passed) | |
| - no duplicate `occurrenceID` | |
| ### S11.2 Current release checks | |
| The generator now parses every date, time, and coordinate pair and rejects | |
| sentinel values (`nan`, `None`, `NULL`, `-1`, `1970-01-01`) before export. The | |
| release audit checks, over every modality and merged table: | |
| - source-to-merged parity for Events and Occurrences; | |
| - a single-rooted Event hierarchy with no dangling `parentEventID`; | |
| - Occurrence-to-Event links and ancestry; | |
| - parsed dates and times, and WGS84-bounded coordinates; | |
| - every Occurrence date inside its parent Event's span and the study window; | |
| - no absolute cluster paths, and every `associatedMedia` resolving to a | |
| released file in the dataset's media manifest; | |
| - agreement between the generator and the released tables. | |
| ### S11.3 Gaps that remain | |
| | Gap | Consequence | | |
| |:--|:--| | |
| | No check that analyses constrain `drone_georef_status` | Mixed-semantics spatial figures are possible (S6) | | |
| | No semantic content check | People in imagery are found by a person detector plus human review, not by the validators | | |
| **A passing validator is evidence about the validator.** The original checks | |
| certified 552,964 records clean while 13.1% of one modality had no usable | |
| timestamp. Validator coverage should be reported, not assumed. | |
| --- | |
| ## S12. Darwin Core field dictionary | |
| `occurrences_all_modalities.csv` — 44 columns: | |
| `modality_type`, `occurrenceID`, `eventID`, `catalogNumber`, `scientificName`, | |
| `kingdom`, `phylum`, `class`, `order`, `family`, `genus`, `specificEpithet`, | |
| `taxonRank`, `vernacularName`, `occurrenceStatus`, `individualCount`, | |
| `lifeStage`, `sex`, `behavior`, `basisOfRecord`, `recordedBy`, `identifiedBy`, | |
| `identificationVerificationStatus`, `identificationRemarks`, `eventDate`, | |
| `eventTime`, `decimalLatitude`, `decimalLongitude`, | |
| `coordinateUncertaintyInMeters`, `geodeticDatum`, `locality`, `locationID`, | |
| `country`, `stateProvince`, `county`, `establishmentMeans`, | |
| `degreeOfEstablishment`, `occurrenceRemarks`, `associatedMedia`, | |
| `associatedReferences`, `datasetID`, `datasetName`, `informationWithheld`, | |
| `dataGeneralizations` | |
| `events_all_modalities.csv` — 21 columns: | |
| `eventID`, `parentEventID`, `eventType`, `eventDate`, `samplingProtocol`, | |
| `sampleSizeValue`, `sampleSizeUnit`, `locality`, `locationID`, | |
| `decimalLatitude`, `decimalLongitude`, `coordinateUncertaintyInMeters`, | |
| `geodeticDatum`, `country`, `stateProvince`, `county`, `datasetID`, | |
| `datasetName`, `recordedBy`, `fieldNotes`, `eventTime` | |
| ### S12.1 Event hierarchy composition | |
| | `eventType` | Rows | Granularity | | |
| |:--|--:|:--| | |
| | `Project` | 6 | study root `TheWilds_2025` + one per modality | | |
| | `SensorDeployment` | 37 | 12 camera + 10 ARU + 15 drone flight session | | |
| | `AudioRecording` | 2,371 | one per processed WAV file (64 with no detections) | | |
| | `MediaEvent` | 39 | one per raw drone video (1 reviewed, no Occurrences) | | |
| | `ObservationSession` | 17 | 13 citizen science + 4 text data | | |
| | **Total** | **2,470** | | | |
| ### S12.2 Occurrence composition | |
| | Modality | Events | Occurrences | Dates | Hourly bins | `locationID`s | | |
| |:--|--:|--:|--:|--:|--:| | |
| | Study root | 1 | — | | | | | |
| | Camera traps | 13 | 224,149 | 29 | 624 | 7 | | |
| | Bioacoustics | 2,382 | 9,960 | 29 | 650 | 6 | | |
| | Drones | 55 | 318,203 | 6 | 10* | 15 | | |
| | Citizen science | 14 | 622 | 13 | 28 | 0 | | |
| | Text data | 5 | 30 | 4 | 4 | 6 | | |
| | **Total** | **2,470** | **552,964** | | | | | |
| \* includes the 2025-08-11 session's bins after its times were recovered on | |
| 2026-11-10 (S10); the integration pass had counted 8. Camera dates and bins use | |
| the corrected timestamps of the release build (439 curated records re-timed). | |
| Camera-trap figures here are the first-generation table in the merged | |
| snapshot. The released post-triage camera dataset has 19,762 Events (1 | |
| `Project`, 12 `SensorDeployment`, 19,749 `Image`) and 72,769 Occurrences, and | |
| the drone table gained 12 manual starling records on 2026-11-01 (S9, defects | |
| 21–22). | |
| --- | |
| ## S13. Arrival characterization, both layers | |
| Window: Campaign 2, 2025-08-04 to 2025-08-28, 600 hours — the only interval in | |
| which all four modalities were simultaneously active. | |
| Definitions. *Acquisition arrival* = one image capture (from | |
| `camera_image_timestamp_map.csv`, corrected timestamps) or one WAV recording | |
| (from `AudioRecording` Event times). *Detection arrival* = one Occurrence with | |
| a resolvable date and time. `B = (σ−μ)/(σ+μ) = (CV−1)/(CV+1)` over | |
| inter-arrival times: −1 periodic, 0 Poisson, →1 maximally bursty. | |
| | Stream | Arrivals | Rate/hr | CV | B | Dates | | |
| |:--|--:|--:|--:|--:|--:| | |
| | **Acquisition** | | | | | | | |
| | Camera image captures | 220,697 | 367.83 | 2.06 | +0.347 | 25 | | |
| | Acoustic WAV recordings | 2,060 | 3.43 | 1.23 | +0.103 | 25 | | |
| | **Detection** | | | | | | | |
| | Camera traps | 208,054 | 346.76 | 7.26 | +0.758 | 25 | | |
| | Bioacoustics | 8,865 | 14.78 | 3.21 | +0.525 | 25 | | |
| | Drones | 94,762 | 157.94 | 216.25 | +0.991 | 3 | | |
| | Citizen science | 242 | 0.40 | 5.30 | +0.682 | 10 | | |
| Detection streams count machine-derived Occurrences only; curated review | |
| records are excluded. Acoustic recordings include the 64 zero-detection WAVs. | |
| The drone row includes the 41,524 Occurrences of 2025-08-11 since their times | |
| were recovered (S10); before that recovery the stream had 53,238 Campaign-2 | |
| arrivals at 88.73/hr, CV 229.61, B +0.991 over 2 dates. Every stream is released as a versioned trace (`analysis/arrival_traces_v2/` | |
| in the study-level dataset) with a source-record ID per arrival, inclusion rules, | |
| and input checksums; earlier unversioned arrival summaries are deprecated. | |
| Acquisition arrivals are not reconstructible for drones (per-frame times are not | |
| retained) or citizen science (one submission per session). | |
| ### S13.1 Diurnal profiles (mean arrivals per hour-of-day over 25 days) | |
| | Hour | Cam capture | Cam detect | Acoustic WAV | Acoustic detect | CS detect | | |
| |--:|--:|--:|--:|--:|--:| | |
| | 00 | 290.1 | 76.5 | 1.8 | 3.4 | 0.0 | | |
| | 01 | 296.3 | 86.9 | 1.8 | 3.2 | 0.0 | | |
| | 02 | 317.4 | 184.1 | 1.8 | 3.3 | 0.0 | | |
| | 03 | 300.3 | 128.6 | 1.8 | 4.3 | 0.0 | | |
| | 04 | 304.0 | 211.9 | 1.8 | 3.3 | 0.0 | | |
| | 05 | 300.6 | 133.3 | 2.8 | 21.1 | 0.7 | | |
| | 06 | 317.9 | 519.2 | **5.2** | **41.6** | 0.0 | | |
| | 07 | 321.8 | **674.4** | 4.3 | 20.1 | 0.0 | | |
| | 08 | 341.3 | 503.2 | 4.3 | 18.3 | 0.0 | | |
| | 09 | 407.2 | 597.6 | 4.6 | 18.4 | 1.7 | | |
| | 10 | 454.4 | 416.5 | 4.3 | 18.6 | **2.7** | | |
| | 11 | 534.4 | 495.1 | 4.3 | 16.8 | 1.4 | | |
| | 12 | 589.0 | 507.6 | 4.3 | 16.2 | 0.2 | | |
| | 13 | **611.8** | 496.8 | 4.3 | 16.2 | 0.4 | | |
| | 14 | 527.6 | 301.1 | 4.3 | 15.8 | 0.0 | | |
| | 15 | 446.0 | 285.0 | 4.3 | 14.6 | 0.0 | | |
| | 16 | 385.3 | 193.5 | 4.3 | 16.5 | 0.0 | | |
| | 17 | 326.1 | 536.7 | 4.3 | 16.4 | 0.0 | | |
| | 18 | 297.8 | 499.9 | 4.3 | 17.6 | 0.0 | | |
| | 19 | 286.4 | 393.7 | **5.2** | 36.2 | 0.0 | | |
| | 20 | 292.8 | 494.8 | 3.0 | 18.7 | 0.0 | | |
| | 21 | 304.8 | 392.9 | 1.8 | 7.2 | 0.0 | | |
| | 22 | 288.4 | 138.9 | 1.8 | 3.0 | 1.6 | | |
| | 23 | 286.1 | 53.9 | 1.8 | 3.8 | 1.0 | | |
| Drone detections are zero in every hour but 09 (26,619 arrivals summed across | |
| the two flight dates). | |
| Diurnal swing, max/min: camera captures **2.1×**, camera detections **12.5×**, | |
| acoustic acquisition **2.9×**, acoustic detections **13.9×**. Detection profiles | |
| are sharper than the acquisition profiles feeding them in every modality where | |
| both are measurable. | |
| These values come from the versioned v2 arrival traces. They supersede the | |
| earlier unversioned arrival summaries, whose event definitions were not | |
| recorded. | |
| --- | |
| ## S13.2 Field servicing effort | |
| Derived from the Campaign-2 Jotform logs in | |
| `thewilds_20250804_20250828/jotforms/` (two camera-trap exports, two | |
| bioacoustic exports). Every row is one sensor servicing action with a `DateTime` | |
| stamp, site ID, device ID, SD-card ID, team member, and free-text note. | |
| | Trip | Actions | Window | Elapsed | Median gap between actions | People | | |
| |:--|--:|:--|--:|--:|--:| | |
| | 2025-08-04 | 8 | 08:58–10:41 | 103 min | 16.0 min | 3 | | |
| | 2025-08-07 | 6 | 08:59–10:05 | 66 min | 3.0 min | 1 | | |
| | 2025-08-11 | 9 | 09:32–10:48 | 76 min | 3.0 min | 2 | | |
| | **Total** | **23** | | **245 min (4.1 h)** | | | | |
| Breakdown of the 23 actions: 11 dropoff (deployment), 6 pickup (retrieval), | |
| 5 check-in (status only, no SD or battery swap), 1 combined. By modality: | |
| 12 acoustic, 11 camera. | |
| Additional operational fields captured per action: | |
| - **Access difficulty**, 1–3 scale — recorded on 15 of 23 actions | |
| (rating 3: 9 actions; rating 1: 5; rating 2: 1) | |
| - **Battery status** — e.g. 98%, 95%, 60%, "Low", "100%" | |
| - **SD-card storage** — e.g. "7% full", "26% full", "5GB" | |
| - **Camera heading** — compass octant, used by the camera-trap georeferencing | |
| - **Relocation notes** — free text landmarks ("Zebra shelter", "Zip tower", | |
| "Lake trail"), which is how the TW09-CT02 mid-deployment move was recovered | |
| - **Team member name and email** | |
| **Scope boundary:** this is measured elapsed field time for the three retained | |
| mid-campaign Jotform exports only. Campaign-1 field notes have no clock times, | |
| Aug. 28 retrieval submissions are absent from the retained exports, and no | |
| per-stage analyst-time log exists. The release therefore reports no total | |
| campaign field effort and no measured desk-processing hours. | |
| **Coverage limits.** These exports cover the three mid-campaign trips only. | |
| Campaign-1 field notes | |
| (`thewilds_20250630_20250703/field_notes/*.md`) are narrative and contain no | |
| clock times, and the 2025-08-28 retrieval visits do not appear in the exported | |
| forms. So 4.1 h is logged servicing time, not total field effort. | |
| **Not recorded anywhere:** analyst time per processing stage. Field visits were | |
| logged with timestamps; the timestamp-repair and taxonomy-review work was not. | |
| This asymmetry is requirement R7 in the paper. | |
| --- | |
| ## S14. Reproduction | |
| Darwin Core generation: | |
| The scripts live in the SmartWilds code repository (`scripts/`). Set | |
| `SMARTWILDS_ARCHIVE` to the root of the field archive before running them; see | |
| `scripts/README.md`. | |
| ```bash | |
| python scripts/darwin_core/generate_darwin_core.py --force | |
| python scripts/arrival_traces/generate_arrival_traces_v2.py | |
| ``` | |
| Camera-trap georeferencing: | |
| ```bash | |
| python scripts/georeferencing/geolocate_camera_trap_treeoflife_predictions.py \ | |
| --input-dir <archive>/processing_output/detections/camera_traps/methods_paper/annotations/sam3/treeoflife_sam3/predictions \ | |
| --config-csv scripts/georeferencing/camera_geolocation_config.csv \ | |
| --output-dir <archive>/processing_output/detections/camera_traps/methods_paper/annotations/sam3/treeoflife_sam3/geolocation/geolocated_predictions \ | |
| --overwrite | |
| ``` | |
| Drone georeferencing: | |
| ```bash | |
| python scripts/georeferencing/geolocate_drone_treeoflife_predictions.py \ | |
| --prediction-dir <SAM3 per-video prediction CSVs> \ | |
| --detection-dir <archive>/processing_output/detections/drones \ | |
| --config-csv scripts/georeferencing/drone_projection_config.csv \ | |
| --output-dir <archive>/processing_output/detections/drones/geolocation/geolocated_predictions \ | |
| --overwrite | |
| ``` | |
| ### S14.1 Release discipline | |
| Integration passes are dated and immutable. Every mutation retains a | |
| before-copy and emits a JSON audit record. Passes differ **semantically**, | |
| not just additively — different visual-label semantics, corrected timestamps — | |
| so comparing numbers across passes is invalid in a way that is not visible in | |
| the numbers. **Any figure or table must name the release build it was computed | |
| from.** | |
| The 2026-10-22 release build supersedes the 2026-07-24 pass; each of its | |
| repairs (S10, S3, S4, S16) has its own JSON audit record, shipped under | |
| `metadata/provenance/`. The 2026-09-20 curated-bird update is reconstructible | |
| from: | |
| - `curated_bird_dwc_update_audit_20260920_015706.json` | |
| - `curated_bird_event_sync_audit_20260920_020046.json` | |
| - `curated_bird_project_sample_size_fix_20260920_020401.json` | |
| --- | |
| ## S15. Release logistics | |
| Each modality is published as its own Hugging Face dataset with its own DOI, | |
| and a study-level dataset holds the merged Event table, the text records, the | |
| arrival traces, and this supplement. The [SmartWilds collection](https://huggingface.co/collections/imageomics/smartwilds) joins all five. | |
| DOIs, the license, and the maintenance commitment will be listed here at | |
| publication. Contact: Jenna M. Kline (kline.377@osu.edu). | |
| ## S16. Defect inventory, in full | |
| Every defect class found while integrating the SmartWilds campaigns (release | |
| build 2026-10-22; camera tables updated 2026-11-08). **Detected by** is | |
| what made the defect visible, grouped into five families: an external record | |
| (service log, field note, platform documentation), a redundant encoding inside | |
| the data, a cross-check between two artifacts, human inspection, or nothing. | |
| Rows 19-20 had no second record and could be bounded but not repaired. | |
| Rows 21-22 were found after the 2026-11-01 annotation update and were | |
| repaired in the release build (row 21) and the 2026-11-08 camera update (row 22). | |
| | # | Defect | Mod. | Scope | Detected by (family) | Repair | Residual risk | | |
| |---:|---|---|---|---|---|---| | |
| | 1 | Device clock wrong or unset | Cam | 221,306 / 235,778 images (93.9%) | Service log deploy/retrieve times (External record) | 18 per-deployment reconstruction methods (paper §timestamp reconstruction; S5) | 130,290 images (55.3%) only medium confidence | | |
| | 2 | Clock reset to factory epoch | Cam | 2 deployments, 1 reporting year 2023 | Service log; implausible date on its face (External record) | Anchored offset from known deploy time | Offset assumed constant over deployment | | |
| | 3 | Media split across SD cards with inconsistent clocks | Cam | TW02-CT01 (4 clock states), TW09-CT02 (2), TW06-CT04 (2), TW04-CT03 (2) | Card-level directory structure + service log (External record) | Per-card anchors reconciled against logs | Within-card drift unmodeled | | |
| | 4 | Timestamp only in burned-in overlay | Cam | 182 images (TW06-CT05, TW09-CT05, TW11-CT06) | The image itself (redundant in-frame encoding) (Redundant encoding in data) | OCR of bottom overlay; 3 read manually | OCR errors on 179 automated reads | | |
| | 5 | Camera mounted inverted | Cam | TW04-CT04, 570 images | Human review of imagery (Human inspection) | Flagged; images rotated downstream | --- | | |
| | 6 | Camera relocated mid-deployment | Cam | TW09-CT02 (dock → Nomad Ridge W, Aug 18) | Field note recording the move (External record) | Split into two logical location intervals | Single `locationID` spans both | | |
| | 7 | Battery exhaustion | Cam | TW02-CT01 Aug 18--25; TW02-CT03 C1 (55 files) | Capture gap vs. logged deployment window (Cross-check) | Recorded as a failure gap with cause | Lost observation window unrecoverable | | |
| | 8 | Non-wildlife content (visitors) | Cam | TW07-CT05, whole deployment | Human review of imagery (Human inspection) | People-only imagery not uploaded; deployment excluded from release | Card disposition after field not documented | | |
| | 9 | Recorder ran a schedule other than configured | ARU | TW05-SM01 C1 (144 files) | File inventory vs. intended config (Cross-check) | Actual schedule inferred and documented | Intended vs. actual effort differ | | |
| | 10 | WAV files with no event record | ARU | 146 / 2,453 paths (6.0%) | File inventory vs. event table (Cross-check) | Classified per path: 64 zero-detection recordings added as Events; 78 transfer duplicates and 4 failed files excluded | 4 fragments/unreadable files unrecoverable | | |
| | 11 | Heterogeneous telemetry schemas | Drone | 3 platforms, 3 formats, feet vs. metres | Platform documentation (External record) | Per-platform field mapping with unit conversion | Mapping assumptions per platform | | |
| | 12 | Drone video not processed | Drone | 1 / 39 raw videos | File inventory vs. event table (Cross-check) | Reviewed (no usable content); retained as a zero-Occurrence `MediaEvent` | --- | | |
| | 13 | Media references to purged scratch workspace | Drone | 16,069 frame paths, 307,260 Occ. | Resolving every `associatedMedia` path (Cross-check) | Replaced with the retained original video, flagged as a video-level fallback | Frame-level media link lost for those rows | | |
| | 14 | Unreviewed fine-rank taxon labels | Cam, Drone | Merged snapshot: 550,722 Occ. `unverified` (99.6%); post-triage camera table: 71,009 Occ. `machine-resolved` (97.6%) | Human-annotated validation subsets (Human inspection) | Camera labels replaced by embedding-based triage with human review and a 2,067-box reference set (S9.1); drone labels kept `unverified`, with a seven-video human-annotated reference set (S9.2); accuracy reported per rank and per method | Drone species-rank labels include implausible taxa; triage label accuracy against the camera reference set not yet reported | | |
| | 15 | Null written as the string `nan` | Drone | 41,524 / 318,203 Occ. (13.1%); 5 Events + 2 deployments | Date redundantly encoded in the `eventID`; time from the video containers cross-checked against the field log (Redundant encoding in data; External record) | Date restored from the identifier and flagged as derived (release build 2026-10-22); time of day recovered on 2026-11-10 from the video container creation times, with each aircraft's clock convention settled against reference flights and the field log and JotForm check-ins of the day (`provenance/drone_time_recovery_20250811.json`) | DJI clock convention is inferred from the field schedule, not verified on a reference flight; treat those times as minute-level | | |
| | 16 | Impossible drone coordinates (`nan`, longitude ≈500) | Drone | 7 Events | Domain check on coordinate pairs (Cross-check) | Valid static video location if inside study area, else blank | Those Events lack a flight-level position | | |
| | 17 | Curated records bypassed timestamp correction | Cam | 439 / 946 curated Occ. | Occurrence date outside parent deployment interval (Cross-check) | Re-timed from the corrected camera timestamp map (release build 2026-10-22) | --- | | |
| | 18 | Root Event row absent from Event table | All | 1 dangling `parentEventID` | Referential check over the Event table (Cross-check) | Study root Event added; parent links validated | --- | | |
| | 19 | Within-card clock drift | Cam | Up to 130,290 images | *none* (None (recorded once)) | Constant clock rate assumed | Unquantifiable timestamp error | | |
| | 20 | True deployment / retrieval times | Cam | Deployment metadata known to contain errors | *none beyond the erroneous records* (None (recorded once)) | Corrected occurrence dates used instead | True camera-days not reportable | | |
| | 21 | Manual starling supplement appended twice | Drone | 24 rows / 12 distinct `occurrenceID`s in the drone and merged Occurrence tables (2026-11-01) | Duplicate `occurrenceID` check (Cross-check) | Repaired in the release build: the 12 exact duplicate rows are dropped, leaving every `occurrenceID` unique (318,215 drone Occurrences) | --- | | |
| | 22 | Merged snapshot and camera release disagree on camera labels | Cam | 224,149 first-generation vs 72,769 post-triage Occ.; 13 vs 19,762 camera Events | Row-count parity between the camera release tables and the merged table (Cross-check) | Not yet repaired; regenerate the merged snapshot and the camera detection-layer arrival traces from the post-triage tables | Cross-modal totals (552,964) and camera detection-layer traces describe the first-generation labels | | |