| |
| """Enrich an existing H5AD with full annotations without recalculating X or raw arrays.""" |
|
|
| from __future__ import annotations |
|
|
| import argparse |
| from pathlib import Path |
|
|
| from drmhb_workflow import enrich_existing, positive_int |
|
|
|
|
| def main() -> None: |
| parser = argparse.ArgumentParser(description=__doc__) |
| parser.add_argument("source", type=Path, help="Existing package-generated H5AD") |
| parser.add_argument( |
| "vibframe", type=Path, help="The original matching VibFrame ZIP/directory" |
| ) |
| parser.add_argument("output", type=Path) |
| parser.add_argument("--max-sidecar-mib", type=positive_int, default=512) |
| parser.add_argument("--overwrite", action="store_true") |
| args = parser.parse_args() |
| print("A transactional copy needs about one additional H5AD of free disk space.") |
| result = enrich_existing( |
| args.source, |
| args.vibframe, |
| args.output, |
| max_sidecar_mib=args.max_sidecar_mib, |
| overwrite=args.overwrite, |
| ) |
| print(f"Created: {result}") |
| print( |
| "Source identities must match. Legacy capture_t companions are not retroactively added." |
| ) |
|
|
|
|
| if __name__ == "__main__": |
| main() |
|
|
