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| """Candidate generation (blocking) for the AMLC 2026 business entity resolution task. | |
| For every Source-1 record, retrieve plausible Source-2/Source-3 records of the SAME country | |
| (matches never cross country) as the union of several sparse top-K cosine retrievals: | |
| name char 3-gram TF-IDF on the spaceless name top k_name (S1 -> pool) | |
| nameaddr char 3-gram TF-IDF on name + ' ' + address top k_nameaddr (S1 -> pool) | |
| addr char 3-gram TF-IDF on address (empty -> skipped) top k_addr (S1 -> pool) | |
| word word 1+2-gram TF-IDF on name + ' ' + address top k_word (S1 -> pool) | |
| reverse nameaddr, pool -> S1 top reverse_k per pool record | |
| The union is needed because 14% of true pairs share no name token and 4% share no address | |
| token (never both), see docs/dataset_findings.md. | |
| TF-IDF: hashed features (sklearn HashingVectorizer, parallel), idf fit on S1 u pool of the | |
| country (smooth idf), sublinear tf, features with df > max_df * n dropped before the l2 norm, | |
| features present on only one side dropped after the norm (they cannot contribute to a dot | |
| product), float32 throughout. | |
| Top-K backends: | |
| sdt sparse_dot_topn.sp_matmul_topn with OpenMP threads, over row blocks of the query matrix. | |
| scipy fallback: chunked Q_chunk @ T.T with scipy, per-row top-K by argpartition, chunks sized | |
| by an estimate of multiply-adds so each worker's product stays bounded; forked worker | |
| processes share the target matrix copy-on-write. | |
| Output parquet columns: s1_id, cand_id, country, src, sim_name, sim_nameaddr, sim_addr, | |
| sim_word, f_name, f_nameaddr, f_addr, f_word, from_reverse, rank_name, rank_nameaddr, | |
| rank_addr, rank_word, rank_rev [, is_match when --gt]. | |
| f_* / from_reverse say which retrieval produced the pair; rank_* is the 0-based rank of the | |
| candidate in the S1 record's top-K list (rank_rev: rank of the S1 record in the pool record's | |
| reverse list), null when not retrieved. With --fill-sims (default) every | |
| sim_* column holds the exact cosine for every pair under that representation (so all four are | |
| usable as features); with --no-fill-sims sim_* is the retrieval cosine and null when that | |
| strategy did not retrieve the pair. | |
| Pre-normalised input: --norm-dir DIR [--split train|test] reads DIR/{s1,s2,s3}.parquet | |
| (or t1,t2,t3) written by scripts/preprocess_normalize.py; name = name_translit (fallback | |
| name_core), address = ' '.join(addr_tokens_translit), spaceless name = name without spaces. | |
| Note that table's country values are lowercased ('us', 'india'); they are used as-is. | |
| Normaliser hook (TSV input only): --normalizer pkg.module:function. The function receives a polars DataFrame | |
| with columns entity_id, business_name, business_address, country and must return it with | |
| string columns name_n and addr_n added (name_ns, the spaceless name, is derived if absent). | |
| Example: | |
| python -m src.blocking --s1 train_source1.tsv --s2 train_source2.tsv --s3 train_source3.tsv \ | |
| --gt train_ground_truth.tsv --out cands.parquet --max-s1 200000 --workers 30 | |
| """ | |
| from __future__ import annotations | |
| import argparse | |
| import gc | |
| import importlib | |
| import json | |
| import math | |
| import multiprocessing as mp | |
| import os | |
| import sys | |
| import time | |
| import warnings | |
| from concurrent.futures import ProcessPoolExecutor | |
| from contextlib import contextmanager | |
| import numpy as np | |
| import polars as pl | |
| import scipy.sparse as sp | |
| from sklearn.feature_extraction.text import HashingVectorizer # import before any fork | |
| try: # import before any fork as well (native OpenMP runtime) | |
| import sparse_dot_topn as _sdt | |
| except ImportError: | |
| _sdt = None | |
| warnings.filterwarnings("ignore", message=r".*fork.*") # polars' at-fork warning; workers never call polars | |
| warnings.filterwarnings("ignore", message=r".*empty_as_null.*") | |
| STRATS = ("name", "nameaddr", "addr", "word") | |
| SIM_COLS = [f"sim_{s}" for s in STRATS] | |
| FLAG_COLS = [f"f_{s}" for s in STRATS] + ["from_reverse"] | |
| RANK_COLS = [f"rank_{s}" for s in STRATS] + ["rank_rev"] | |
| NO_RANK = np.int16(32767) | |
| REV_CAPS = (0, 5, 10, 20, 40) # reverse-only pairs kept per S1 in the sweep (plus 'all') | |
| K_FRACS = (0.25, 0.5, 0.75, 1.0) # forward K scaling in the sweep | |
| SRC_COLS = ["entity_id", "business_name", "business_address", "country"] | |
| # -------------------------------------------------------------------------------------------- | |
| # logging, timing, memory | |
| # -------------------------------------------------------------------------------------------- | |
| _T0 = time.time() | |
| TIMINGS: dict[str, float] = {} | |
| def _mem_info(): | |
| rss = avail = None | |
| try: | |
| import psutil | |
| rss = psutil.Process().memory_info().rss | |
| avail = psutil.virtual_memory().available | |
| except Exception: | |
| try: | |
| with open("/proc/self/statm") as f: | |
| rss = int(f.read().split()[1]) * os.sysconf("SC_PAGE_SIZE") | |
| with open("/proc/meminfo") as f: | |
| for line in f: | |
| if line.startswith("MemAvailable:"): | |
| avail = int(line.split()[1]) * 1024 | |
| except Exception: | |
| pass | |
| return rss, avail | |
| def _peak_gb(): | |
| import resource | |
| scale = 1 if sys.platform == "darwin" else 1024 # ru_maxrss: bytes on macOS, KiB on Linux | |
| own = resource.getrusage(resource.RUSAGE_SELF).ru_maxrss * scale / 1e9 | |
| kids = resource.getrusage(resource.RUSAGE_CHILDREN).ru_maxrss * scale / 1e9 | |
| return own, kids | |
| def log(msg: str) -> None: | |
| rss, avail = _mem_info() | |
| parts = [f"{time.time() - _T0:8.1f}s"] | |
| if rss is not None: | |
| parts.append(f"rss={rss / 1e9:6.2f}GB") | |
| if avail is not None: | |
| parts.append(f"avail={avail / 1e9:6.1f}GB") | |
| print(f"[{' '.join(parts)}] {msg}", flush=True) | |
| def stage(name: str): | |
| t = time.time() | |
| log(f">> {name}") | |
| try: | |
| yield | |
| finally: | |
| dt = time.time() - t | |
| TIMINGS[name] = TIMINGS.get(name, 0.0) + dt | |
| log(f"<< {name} ({dt:.1f}s)") | |
| # -------------------------------------------------------------------------------------------- | |
| # loading and normalisation | |
| # -------------------------------------------------------------------------------------------- | |
| def read_tsv(path: str, columns: list[str] | None = None) -> pl.DataFrame: | |
| """Read a challenge TSV with every column as string, no quoting, empty -> ''.""" | |
| kw = dict(separator="\t", quote_char=None, infer_schema_length=0, truncate_ragged_lines=True, | |
| encoding="utf8-lossy", columns=columns) | |
| with warnings.catch_warnings(): | |
| warnings.simplefilter("ignore", DeprecationWarning) | |
| df = pl.read_csv(path, **kw) | |
| return df.with_columns(pl.all().fill_null("")) | |
| def read_source(path: str) -> pl.DataFrame: | |
| df = read_tsv(path) | |
| missing = [c for c in SRC_COLS if c not in df.columns] | |
| if missing: | |
| raise ValueError(f"{path}: missing columns {missing}; got {df.columns}") | |
| return df.select( | |
| pl.col("entity_id").str.strip_chars(), | |
| pl.col("business_name"), | |
| pl.col("business_address"), | |
| pl.col("country").str.strip_chars(), | |
| ) | |
| def _nfkd(e: pl.Expr) -> pl.Expr: | |
| if hasattr(pl.col("x").str, "normalize"): | |
| return e.str.normalize("NFKD") | |
| import pyarrow.compute as pc # older polars: do it in arrow | |
| return e.map_batches(lambda s: pl.from_arrow(pc.utf8_normalize(s.to_arrow(), "NFKD")), return_dtype=pl.Utf8) | |
| def default_normalizer(df: pl.DataFrame) -> pl.DataFrame: | |
| """Light normaliser: NFKD, drop non-spacing marks (accents), lowercase, drop literal 'null' | |
| address components, every run of non letter/number/spacing-mark chars -> one space, strip. | |
| Spacing marks (\\p{Mc}) are kept so Indic words are not split at vowel signs.""" | |
| def base(col: str) -> pl.Expr: | |
| return _nfkd(pl.col(col)).str.replace_all(r"\p{Mn}+", "").str.to_lowercase() | |
| punct = r"[^\p{L}\p{N}\p{Mc}]+" | |
| name = base("business_name").str.replace_all(punct, " ").str.strip_chars() | |
| addr = base("business_address").str.replace_all(r"\bnull\b", " ").str.replace_all(punct, " ").str.strip_chars() | |
| return df.with_columns(name_n=name, addr_n=addr) | |
| def load_normalizer(spec: str | None): | |
| if not spec: | |
| return default_normalizer | |
| mod, _, fn = spec.partition(":") | |
| return getattr(importlib.import_module(mod), fn or "normalize") | |
| def apply_normalizer(fn, df: pl.DataFrame, src: str) -> pl.DataFrame: | |
| out = fn(df) | |
| for c in ("name_n", "addr_n"): | |
| if c not in out.columns: | |
| raise ValueError(f"normaliser must add column {c!r}") | |
| if "name_ns" not in out.columns: | |
| out = out.with_columns(name_ns=pl.col("name_n").str.replace_all(" ", "", literal=True)) | |
| return out.select( | |
| "entity_id", | |
| "country", | |
| pl.col("name_n").fill_null(""), | |
| pl.col("name_ns").fill_null(""), | |
| pl.col("addr_n").fill_null(""), | |
| pl.lit(src).alias("src"), | |
| ) | |
| NORM_TABLES = {"train": ("s1", "s2", "s3"), "test": ("t1", "t2", "t3")} | |
| def read_norm_parquet(path: str, src: str) -> pl.DataFrame: | |
| """Read a table written by scripts/preprocess_normalize.py and build the retrieval strings: | |
| name = name_translit (falls back to name_core when null/blank), address = ' '.join( | |
| addr_tokens_translit), spaceless name = name with whitespace removed.""" | |
| import pyarrow.parquet as pq | |
| have = set(pq.read_schema(path).names) | |
| need = {"entity_id", "country", "addr_tokens_translit"} | |
| if not need <= have or not ({"name_translit", "name_core"} & have): | |
| raise ValueError(f"{path}: needs {sorted(need)} and name_translit/name_core; has {sorted(have)}") | |
| cols = [c for c in ("entity_id", "country", "name_translit", "name_core", "addr_tokens_translit") if c in have] | |
| df = pl.read_parquet(path, columns=cols) | |
| blank = pl.lit(None, dtype=pl.Utf8) | |
| tr = pl.col("name_translit") if "name_translit" in have else blank | |
| core = pl.col("name_core") if "name_core" in have else blank | |
| ws = r"\s+" | |
| name = ( | |
| pl.when(tr.is_not_null() & (tr.str.strip_chars() != "")).then(tr).otherwise(core) | |
| .fill_null("").str.replace_all(ws, " ").str.strip_chars() | |
| ) | |
| addr = pl.col("addr_tokens_translit").list.join(" ").fill_null("").str.replace_all(ws, " ").str.strip_chars() | |
| return df.select( | |
| pl.col("entity_id").cast(pl.Utf8).str.strip_chars(), | |
| pl.col("country").cast(pl.Utf8).fill_null("").str.strip_chars(), | |
| name.alias("name_n"), | |
| name.str.replace_all(ws, "").alias("name_ns"), | |
| addr.alias("addr_n"), | |
| pl.lit(src).alias("src"), | |
| ) | |
| def strategy_texts(df: pl.DataFrame, strat: str) -> list[str]: | |
| if strat == "name": | |
| e = pl.col("name_ns") | |
| elif strat == "addr": | |
| e = pl.col("addr_n") | |
| else: # nameaddr, word | |
| e = pl.concat_str([pl.col("name_n"), pl.col("addr_n")], separator=" ").str.strip_chars() | |
| return df.select(e.alias("t")).get_column("t").to_list() | |
| def _gather(s: pl.Series, idx: np.ndarray) -> pl.Series: | |
| return s.gather(idx) if hasattr(s, "gather") else s.take(idx) | |
| # -------------------------------------------------------------------------------------------- | |
| # vectorisation (hashed, parallel) | |
| # -------------------------------------------------------------------------------------------- | |
| def _char3(s: str) -> list[str]: | |
| if not s: | |
| return [] | |
| s = f" {s} " | |
| return [s[i : i + 3] for i in range(len(s) - 2)] | |
| def _word12(s: str) -> list[str]: | |
| t = s.split() | |
| return t + [f"{a} {b}" for a, b in zip(t, t[1:])] | |
| _HV: dict = {} | |
| def _vec_worker(args): | |
| texts, kind, n_features = args | |
| hv = _HV.get((kind, n_features)) | |
| if hv is None: | |
| hv = HashingVectorizer( | |
| analyzer=_char3 if kind == "char" else _word12, | |
| n_features=n_features, | |
| alternate_sign=False, | |
| norm=None, | |
| dtype=np.float32, | |
| ) | |
| _HV[(kind, n_features)] = hv | |
| return hv.transform(texts).tocsr() | |
| def vectorize(texts: list[str], kind: str, n_features: int, vpool, chunk: int) -> sp.csr_matrix: | |
| if not texts: | |
| return sp.csr_matrix((0, n_features), dtype=np.float32) | |
| jobs = ((texts[i : i + chunk], kind, n_features) for i in range(0, len(texts), chunk)) | |
| parts = list(vpool.map(_vec_worker, jobs)) if vpool is not None else [_vec_worker(j) for j in jobs] | |
| X = sp.vstack(parts, format="csr") if len(parts) > 1 else parts[0] | |
| del parts | |
| return X.astype(np.float32, copy=False) | |
| def _blocks(n: int, step: int = 100_000_000): | |
| for lo in range(0, n, step): | |
| yield lo, min(n, lo + step) | |
| def _l2_normalize_rows(X: sp.csr_matrix, block: int = 1_000_000) -> None: | |
| n = X.shape[0] | |
| for lo in range(0, n, block): | |
| hi = min(n, lo + block) | |
| s, e = int(X.indptr[lo]), int(X.indptr[hi]) | |
| d = X.data[s:e] | |
| cs = np.zeros(e - s + 1, dtype=np.float64) | |
| np.cumsum(d.astype(np.float64) ** 2, out=cs[1:]) | |
| ip = X.indptr[lo : hi + 1] - s | |
| nrm = np.sqrt(np.maximum(cs[ip[1:]] - cs[ip[:-1]], 0.0)) | |
| nrm[nrm == 0] = 1.0 | |
| d *= np.repeat((1.0 / nrm).astype(np.float32), np.diff(ip)) | |
| def tfidf_pair(XA: sp.csr_matrix, XB: sp.csr_matrix, max_df: float) -> dict: | |
| """In place: counts -> (1+log tf) * idf, drop df>max_df*n, l2-normalise rows, then drop | |
| features absent from either side (no effect on A.B^T). idf fit on rows of XA u XB.""" | |
| F = XA.shape[1] | |
| dfA = np.bincount(XA.indices, minlength=F) | |
| dfB = np.bincount(XB.indices, minlength=F) | |
| n = XA.shape[0] + XB.shape[0] | |
| df = dfA + dfB | |
| idf = (np.log((1.0 + n) / (1.0 + df)) + 1.0).astype(np.float32) | |
| pruned = (df > max_df * n) if max_df < 1.0 else np.zeros(F, dtype=bool) | |
| idf[pruned] = 0.0 | |
| keep = (dfA > 0) & (dfB > 0) & ~pruned | |
| st = { | |
| "n_features_seen": int((df > 0).sum()), | |
| "n_features_pruned_maxdf": int(pruned.sum()), | |
| "n_features_kept": int(keep.sum()), | |
| } | |
| for tag, X in (("A", XA), ("B", XB)): | |
| nnz0 = X.nnz | |
| for lo, hi in _blocks(X.nnz): | |
| d = X.data[lo:hi] | |
| np.log(d, out=d) | |
| d += 1.0 | |
| d *= idf[X.indices[lo:hi]] | |
| X.eliminate_zeros() | |
| _l2_normalize_rows(X) | |
| for lo, hi in _blocks(X.nnz): | |
| X.data[lo:hi][~keep[X.indices[lo:hi]]] = 0.0 | |
| X.eliminate_zeros() | |
| X.sort_indices() | |
| st[f"nnz_{tag}_raw"] = int(nnz0) | |
| st[f"nnz_{tag}"] = int(X.nnz) | |
| st[f"empty_rows_{tag}"] = float((np.diff(X.indptr) == 0).mean()) if X.shape[0] else 0.0 | |
| return st | |
| # -------------------------------------------------------------------------------------------- | |
| # top-K sparse retrieval | |
| # -------------------------------------------------------------------------------------------- | |
| _G: dict = {} # globals shared with forked workers (copy-on-write) | |
| def _fork_pool(workers: int) -> ProcessPoolExecutor: | |
| """Fork-based pool: workers inherit module globals (_G) copy-on-write. A worker that dies | |
| raises BrokenProcessPool instead of hanging. On macOS run with | |
| OBJC_DISABLE_INITIALIZE_FORK_SAFETY=YES (Linux needs nothing).""" | |
| return ProcessPoolExecutor(max_workers=workers, mp_context=mp.get_context("fork")) | |
| def _row_costs(Q: sp.csr_matrix, df_t: np.ndarray, block: int = 1_000_000) -> np.ndarray: | |
| """Multiply-adds of row i of Q @ T.T = sum over its features of the feature's df in T.""" | |
| n = Q.shape[0] | |
| out = np.zeros(n, dtype=np.int64) | |
| for lo in range(0, n, block): | |
| hi = min(n, lo + block) | |
| s, e = int(Q.indptr[lo]), int(Q.indptr[hi]) | |
| cs = np.zeros(e - s + 1, dtype=np.int64) | |
| np.cumsum(df_t[Q.indices[s:e]], out=cs[1:]) | |
| ip = Q.indptr[lo : hi + 1] - s | |
| out[lo:hi] = cs[ip[1:]] - cs[ip[:-1]] | |
| return out | |
| def _plan_chunks(cost: np.ndarray, budget: float, max_rows: int) -> list[tuple[int, int]]: | |
| n = len(cost) | |
| cum = np.cumsum(cost) | |
| chunks, lo = [], 0 | |
| while lo < n: | |
| base = cum[lo - 1] if lo else 0 | |
| hi = int(np.searchsorted(cum, base + budget, side="right")) | |
| hi = min(max(hi, lo + 1), lo + max_rows, n) | |
| chunks.append((lo, hi)) | |
| lo = hi | |
| return chunks | |
| def _csr_rowwise_topk(C: sp.csr_matrix, k: int, min_sim: float, row_offset: int): | |
| indptr, ind, dat = C.indptr, C.indices, C.data | |
| n = C.shape[0] | |
| lens = np.diff(indptr) | |
| rows_all = np.repeat(np.arange(n, dtype=np.int32), lens) | |
| small = lens <= k | |
| sel = small[rows_all] & (dat > min_sim) | |
| R, Cc, V = [rows_all[sel]], [ind[sel]], [dat[sel]] | |
| for i in np.flatnonzero(~small): | |
| s, e = indptr[i], indptr[i + 1] | |
| d = dat[s:e] | |
| p = np.argpartition(d, (e - s) - k)[(e - s) - k :] | |
| p = p[d[p] > min_sim] | |
| R.append(np.full(len(p), i, dtype=np.int32)) | |
| Cc.append(ind[s:e][p]) | |
| V.append(d[p]) | |
| return ( | |
| np.concatenate(R).astype(np.int32) + np.int32(row_offset), | |
| np.concatenate(Cc).astype(np.int32), | |
| np.concatenate(V).astype(np.float32), | |
| ) | |
| def _topk_scipy_worker(task): | |
| lo, hi = task | |
| C = (_G["Q"][lo:hi] @ _G["TT"]).tocsr() | |
| return _csr_rowwise_topk(C, _G["k"], _G["min_sim"], lo) | |
| def _topk_scipy(Q, TT, k, min_sim, workers, chunks): | |
| _G.update(Q=Q, TT=TT, k=k, min_sim=min_sim) | |
| try: | |
| if workers > 1 and len(chunks) > 1: | |
| with _fork_pool(workers) as p: | |
| out = list(p.map(_topk_scipy_worker, chunks)) | |
| else: | |
| out = [_topk_scipy_worker(c) for c in chunks] | |
| finally: | |
| _G.clear() | |
| return out | |
| def _topk_sdt(Q, TT, k, min_sim, workers, rows_per_call): | |
| sp_matmul_topn = _sdt.sp_matmul_topn | |
| out = [] | |
| n = Q.shape[0] | |
| for lo in range(0, n, rows_per_call): | |
| hi = min(n, lo + rows_per_call) | |
| C = sp_matmul_topn( | |
| Q[lo:hi], TT, top_n=k, threshold=min_sim, sort=False, n_threads=workers if workers > 1 else None | |
| ).tocsr() | |
| rows = np.repeat(np.arange(lo, hi, dtype=np.int32), np.diff(C.indptr)) | |
| out.append((rows, C.indices.astype(np.int32), C.data.astype(np.float32))) | |
| return out | |
| def topk_search(Q: sp.csr_matrix, T: sp.csr_matrix, k: int, args, label: str): | |
| """Top-k columns of Q @ T.T per row of Q (cosine; rows are l2-normalised).""" | |
| empty = (np.zeros(0, np.int32), np.zeros(0, np.int32), np.zeros(0, np.float32)) | |
| if k <= 0 or Q.shape[0] == 0 or T.shape[0] == 0: | |
| return empty, {} | |
| TT = T.T.tocsr() # (F x n_target) | |
| cost = _row_costs(Q, np.diff(TT.indptr).astype(np.int64)) | |
| total_ops = int(cost.sum()) | |
| t = time.time() | |
| if args.backend == "sdt": | |
| out = _topk_sdt(Q, TT, k, args.min_sim, args.workers, args.sdt_rows) | |
| n_chunks = math.ceil(Q.shape[0] / args.sdt_rows) | |
| else: | |
| chunks = _plan_chunks(cost, args.chunk_ops, args.chunk_max_rows) | |
| n_chunks = len(chunks) | |
| out = _topk_scipy(Q, TT, k, args.min_sim, args.workers, chunks) | |
| del TT | |
| dt = time.time() - t | |
| qi = np.concatenate([o[0] for o in out]) if out else empty[0] | |
| ti = np.concatenate([o[1] for o in out]) if out else empty[1] | |
| sim = np.concatenate([o[2] for o in out]) if out else empty[2] | |
| st = { | |
| "n_query": int(Q.shape[0]), | |
| "n_target": int(T.shape[0]), | |
| "k": int(k), | |
| "est_mult_adds": total_ops, | |
| "max_row_mult_adds": int(cost.max()) if len(cost) else 0, | |
| "n_chunks": int(n_chunks), | |
| "seconds": round(dt, 2), | |
| "mult_adds_per_s": round(total_ops / dt, 1) if dt > 0 else None, | |
| "n_pairs": int(len(qi)), | |
| } | |
| log( | |
| f" {label}: {Q.shape[0]:,} x {T.shape[0]:,} k={k} ops={total_ops:.3e} " | |
| f"chunks={n_chunks} -> {len(qi):,} pairs in {dt:.1f}s ({st['mult_adds_per_s'] or 0:.2e} ops/s)" | |
| ) | |
| return (qi, ti, sim), st | |
| # -------------------------------------------------------------------------------------------- | |
| # exact cosines for arbitrary pairs (fill-sims) | |
| # -------------------------------------------------------------------------------------------- | |
| def _fill_worker(task): | |
| lo, hi = task | |
| a, b = _G["a"][lo:hi], _G["b"][lo:hi] | |
| res = {} | |
| for s, (XA, XB) in _G["mats"].items(): | |
| res[s] = np.asarray(XA[a].multiply(XB[b]).sum(axis=1), dtype=np.float32).ravel() | |
| return lo, res | |
| def fill_sims(a: np.ndarray, b: np.ndarray, mats: dict, workers: int, chunk: int) -> dict: | |
| n = len(a) | |
| out = {s: np.zeros(n, dtype=np.float32) for s in mats} | |
| tasks = [(lo, min(n, lo + chunk)) for lo in range(0, n, chunk)] | |
| _G.update(a=a, b=b, mats=mats) | |
| try: | |
| if workers > 1 and len(tasks) > 1: | |
| with _fork_pool(workers) as p: | |
| for lo, res in p.map(_fill_worker, tasks): | |
| for s, v in res.items(): | |
| out[s][lo : lo + len(v)] = v | |
| else: | |
| for t in tasks: | |
| lo, res = _fill_worker(t) | |
| for s, v in res.items(): | |
| out[s][lo : lo + len(v)] = v | |
| finally: | |
| _G.clear() | |
| return out | |
| # -------------------------------------------------------------------------------------------- | |
| # per-country blocking | |
| # -------------------------------------------------------------------------------------------- | |
| def _group_rank(g: np.ndarray, sim: np.ndarray) -> np.ndarray: | |
| """0-based rank of each element within its group g, by descending sim.""" | |
| if len(g) == 0: | |
| return np.zeros(0, dtype=np.int16) | |
| order = np.lexsort((-sim, g)) | |
| gs = g[order] | |
| starts = np.r_[0, np.flatnonzero(gs[1:] != gs[:-1]) + 1] | |
| pos = np.arange(len(gs)) - np.repeat(starts, np.diff(np.r_[starts, len(gs)])) | |
| r = np.empty(len(g), dtype=np.int64) | |
| r[order] = pos | |
| return np.minimum(r, int(NO_RANK) - 1).astype(np.int16) | |
| def _k_grid(k: int) -> list[int]: | |
| return sorted({x for x in (1, 2, 3, 5, 10, 15, 20, 30, 50, 100) if x < k} | {k}) | |
| def _sweeps(a, q_idx, n_a, ranks, is_match, rev_only_rank, kmap, args) -> dict: | |
| """Pair counts / true-pair counts / per-S1 candidate counts under alternative K and | |
| reverse-cap settings, computed from the retrieved (uncapped) pairs.""" | |
| out: dict = {"recall_at_k": {}, "configs": {}} | |
| fwd = [s for s in STRATS if kmap[s] > 0] | |
| for s in fwd: | |
| r = ranks[s] | |
| out["recall_at_k"][s] = {int(k): int((is_match & (r < k)).sum()) for k in _k_grid(kmap[s])} | |
| if args.reverse_k > 0: | |
| r = ranks["rev"] | |
| out["recall_at_k"]["rev"] = {int(k): int((is_match & (r < k)).sum()) for k in range(1, args.reverse_k + 1)} | |
| from_rev = ranks["rev"] != NO_RANK | |
| def add(name, keep): | |
| out["configs"][name] = { | |
| "pairs": int(keep.sum()), | |
| "true": int((keep & is_match).sum()), | |
| "per_s1": np.bincount(a[keep], minlength=n_a)[q_idx], | |
| } | |
| for f in K_FRACS: | |
| keep = from_rev.copy() | |
| for s in fwd: | |
| keep |= ranks[s] < max(1, math.ceil(f * kmap[s])) | |
| add(f"k_x{f}", keep) | |
| keep_norev = np.zeros(len(a), dtype=bool) | |
| for s in fwd: | |
| keep_norev |= ranks[s] < max(1, math.ceil(f * kmap[s])) | |
| add(f"k_x{f}_norev", keep_norev) | |
| fwd_any = np.zeros(len(a), dtype=bool) | |
| for s in fwd: | |
| fwd_any |= ranks[s] != NO_RANK | |
| for c in REV_CAPS: | |
| add(f"revcap_{c}", fwd_any | (rev_only_rank < c)) | |
| return out | |
| def block_country(country, s1c, poolc, q_idx, args, vpool, gt_pairs_c): | |
| n_a, n_b = s1c.height, poolc.height | |
| sampled = len(q_idx) < n_a | |
| is_query = np.zeros(n_a, dtype=bool) | |
| is_query[q_idx] = True | |
| kmap = {"name": args.k_name, "nameaddr": args.k_nameaddr, "addr": args.k_addr, "word": args.k_word} | |
| results: dict[str, tuple] = {} | |
| mats: dict[str, tuple] = {} | |
| cstats: dict = {"n_s1_full": n_a, "n_s1_query": int(len(q_idx)), "n_pool": n_b, "strategies": {}} | |
| for strat in STRATS: | |
| k = kmap[strat] | |
| need_rev = strat == "nameaddr" and args.reverse_k > 0 | |
| if k <= 0 and not need_rev: | |
| continue | |
| kind = "word" if strat == "word" else "char" | |
| nf = 1 << (args.hash_bits_word if kind == "word" else args.hash_bits_char) | |
| tag = f"{country}/{strat}" | |
| sst: dict = {} | |
| with stage(f"{tag}/vectorize"): | |
| XA = vectorize(strategy_texts(s1c, strat), kind, nf, vpool, args.vec_chunk) | |
| XB = vectorize(strategy_texts(poolc, strat), kind, nf, vpool, args.vec_chunk) | |
| with stage(f"{tag}/tfidf"): | |
| sst["tfidf"] = tfidf_pair(XA, XB, args.max_df) | |
| log(f" {tag} tfidf: {sst['tfidf']}") | |
| if k > 0: | |
| with stage(f"{tag}/topk_forward"): | |
| Q = XA[q_idx] if sampled else XA | |
| (qi, ti, sim), sst["forward"] = topk_search(Q, XB, k, args, f"{tag} fwd") | |
| del Q | |
| a = q_idx[qi].astype(np.int32) if sampled else qi | |
| results[strat] = (a, ti, sim, _group_rank(qi, sim)) | |
| if need_rev: | |
| with stage(f"{tag}/topk_reverse"): | |
| if sampled and args.reverse_scope == "sample": | |
| T = XA[q_idx] | |
| (qi, ti, sim), sst["reverse"] = topk_search(XB, T, args.reverse_k, args, f"{tag} rev") | |
| del T | |
| rrank = _group_rank(qi, sim) | |
| a, b = q_idx[ti].astype(np.int32), qi | |
| else: | |
| (qi, ti, sim), sst["reverse"] = topk_search(XB, XA, args.reverse_k, args, f"{tag} rev") | |
| rrank = _group_rank(qi, sim) # rank among the pool record's full S1 list | |
| keep = is_query[ti] | |
| a, b, sim, rrank = ti[keep], qi[keep], sim[keep], rrank[keep] | |
| results["rev"] = (a, b, sim, rrank) | |
| if args.fill_sims and k > 0: | |
| mats[strat] = (XA, XB) | |
| else: | |
| del XA, XB | |
| gc.collect() | |
| cstats["strategies"][strat] = sst | |
| with stage(f"{country}/union"): | |
| frames = [] | |
| for s_, (a, b, sim, rank) in results.items(): | |
| key = a.astype(np.int64) * n_b + b.astype(np.int64) | |
| frames.append(pl.DataFrame({"key": key, f"sim_{s_}": sim, f"rank_{s_}": rank})) | |
| present = list(results) | |
| if frames: | |
| U = ( | |
| pl.concat(frames, how="diagonal") | |
| .group_by("key") | |
| .agg([pl.col(f"sim_{x}").max() for x in present] + [pl.col(f"rank_{x}").min() for x in present]) | |
| .sort("key") | |
| ) | |
| else: | |
| U = pl.DataFrame({"key": np.zeros(0, np.int64)}) | |
| del frames, results | |
| for x in list(STRATS) + ["rev"]: | |
| if f"sim_{x}" not in U.columns: | |
| U = U.with_columns(pl.lit(None, dtype=pl.Float32).alias(f"sim_{x}"), pl.lit(None, dtype=pl.Int16).alias(f"rank_{x}")) | |
| U = U.with_columns(sim_na_ret=pl.coalesce("sim_nameaddr", "sim_rev")) | |
| key = U.get_column("key").to_numpy() | |
| a = (key // n_b).astype(np.int32) | |
| ranks = {x: U.get_column(f"rank_{x}").fill_null(NO_RANK).to_numpy() for x in list(STRATS) + ["rev"]} | |
| fwd_any = np.zeros(len(key), dtype=bool) | |
| for x in STRATS: | |
| fwd_any |= ranks[x] != NO_RANK | |
| rev_only = (ranks["rev"] != NO_RANK) & ~fwd_any | |
| rev_only_rank = np.full(len(key), NO_RANK, dtype=np.int16) | |
| rev_only_rank[rev_only] = _group_rank(a[rev_only], U.get_column("sim_na_ret").to_numpy()[rev_only]) | |
| is_match = None | |
| if gt_pairs_c is not None: | |
| ga = gt_pairs_c.join(s1c.select("entity_id").with_row_index("a"), left_on="s1_id", right_on="entity_id") | |
| ga = ga.join(poolc.select("entity_id").with_row_index("b"), left_on="cand_id", right_on="entity_id") | |
| gkey = np.sort(ga.get_column("a").to_numpy().astype(np.int64) * n_b + ga.get_column("b").to_numpy().astype(np.int64)) | |
| pos = np.searchsorted(gkey, key) | |
| is_match = (pos < len(gkey)) & (gkey[np.minimum(pos, max(len(gkey) - 1, 0))] == key) if len(gkey) else np.zeros(len(key), bool) | |
| cstats["sweeps"] = _sweeps(a, q_idx, n_a, ranks, is_match, rev_only_rank, kmap, args) | |
| cstats["n_pairs_before_cap"] = int(len(key)) | |
| cstats["n_reverse_only_pairs"] = int(rev_only.sum()) | |
| if args.reverse_cap > 0: | |
| keep = rev_only_rank < args.reverse_cap | |
| keep |= ~rev_only | |
| U = U.filter(pl.Series(keep)) | |
| key, a = key[keep], a[keep] | |
| is_match = is_match[keep] if is_match is not None else None | |
| b = (key % n_b).astype(np.int32) | |
| del ranks, fwd_any, rev_only, rev_only_rank | |
| log(f" {country}: {len(a):,} unique candidate pairs") | |
| if args.fill_sims and mats: | |
| with stage(f"{country}/fill_sims"): | |
| filled = fill_sims(a, b, mats, args.workers, args.fill_chunk) | |
| U = U.with_columns([pl.Series(f"sim_{x}", v) for x, v in filled.items()]) | |
| del filled | |
| else: | |
| U = U.with_columns(sim_nameaddr=pl.col("sim_na_ret")) | |
| del mats | |
| gc.collect() | |
| with stage(f"{country}/assemble"): | |
| cols = { | |
| "s1_id": _gather(s1c.get_column("entity_id"), a), | |
| "cand_id": _gather(poolc.get_column("entity_id"), b), | |
| "country": pl.repeat(country, len(a), eager=True, dtype=pl.Utf8).alias("country"), | |
| "src": _gather(poolc.get_column("src"), b), | |
| } | |
| for x in STRATS: | |
| cols[f"sim_{x}"] = U.get_column(f"sim_{x}").cast(pl.Float32) | |
| for x in STRATS: | |
| cols[f"f_{x}"] = U.get_column(f"rank_{x}").is_not_null().alias(f"f_{x}") | |
| cols["from_reverse"] = U.get_column("rank_rev").is_not_null().alias("from_reverse") | |
| for x in list(STRATS) + ["rev"]: | |
| cols[f"rank_{x}"] = U.get_column(f"rank_{x}").cast(pl.Int16) | |
| if is_match is not None: | |
| cols["is_match"] = pl.Series("is_match", is_match) | |
| out = pl.DataFrame(cols) | |
| del U | |
| per_s1 = np.bincount(a, minlength=n_a)[q_idx] | |
| cstats["n_pairs"] = int(out.height) | |
| cstats["pairs_per_strategy"] = {c: int(out.get_column(c).sum()) for c in FLAG_COLS} | |
| return out, per_s1, cstats | |
| # -------------------------------------------------------------------------------------------- | |
| # evaluation | |
| # -------------------------------------------------------------------------------------------- | |
| def _dist(x: np.ndarray) -> dict: | |
| if len(x) == 0: | |
| return {} | |
| return { | |
| "mean": round(float(x.mean()), 3), | |
| "p50": float(np.percentile(x, 50)), | |
| "p90": float(np.percentile(x, 90)), | |
| "p99": float(np.percentile(x, 99)), | |
| "max": int(x.max()), | |
| "share_zero": round(float((x == 0).mean()), 5), | |
| } | |
| def evaluate(gt_pairs: pl.DataFrame, hits: pl.DataFrame, query_ids: pl.DataFrame) -> dict: | |
| """gt_pairs: s1_id,cand_id,country,src for queried S1 ids. hits: candidate rows with | |
| is_match (s1_id,cand_id,country,src,flags). query_ids: s1_id,country of all queried S1.""" | |
| hits = hits.with_columns(union=pl.lit(True)) | |
| names = FLAG_COLS + ["union"] | |
| m: dict = {} | |
| def recall(group: list[str]): | |
| if group: | |
| tot = gt_pairs.group_by(group).agg(pl.len().alias("n_gt")) | |
| hit = hits.group_by(group).agg([pl.col(f).sum() for f in names]) | |
| j = tot.join(hit, on=group, how="left").fill_null(0).sort(group) | |
| return { | |
| "|".join(str(r[g]) for g in group): { | |
| "n_gt_pairs": int(r["n_gt"]), | |
| **{f: round(r[f] / r["n_gt"], 5) if r["n_gt"] else None for f in names}, | |
| } | |
| for r in j.iter_rows(named=True) | |
| } | |
| n = gt_pairs.height | |
| return {"n_gt_pairs": n, **{f: round(hits.get_column(f).sum() / n, 5) if n else None for f in names}} | |
| m["pair_recall"] = { | |
| "overall": recall([]), | |
| "by_country": recall(["country"]), | |
| "by_source": recall(["src"]), | |
| "by_country_source": recall(["country", "src"]), | |
| } | |
| n = gt_pairs.height | |
| strat_flags = FLAG_COLS | |
| only, without = {}, {} | |
| for f in strat_flags: | |
| others = [g for g in strat_flags if g != f] | |
| any_other = pl.any_horizontal([pl.col(g) for g in others]) | |
| only[f] = round(hits.filter(pl.col(f) & ~any_other).height / n, 5) if n else None | |
| without[f] = round(hits.filter(any_other).height / n, 5) if n else None | |
| m["pair_recall_only_this_strategy"] = only | |
| m["pair_recall_union_without"] = without | |
| ns = gt_pairs.select("s1_id", "country").unique() | |
| ent = hits.group_by("s1_id").agg([pl.col(f).any() for f in names]) | |
| e = ns.join(ent, on="s1_id", how="left").fill_null(False) | |
| n_ns = e.height | |
| m["entity_any_found"] = { | |
| "n_nonsingleton_entities": n_ns, | |
| "overall": {f: round(e.get_column(f).sum() / n_ns, 5) if n_ns else None for f in names}, | |
| "by_country": { | |
| str(r["country"]): {f: round(r[f] / r["n"], 5) for f in names} | |
| for r in e.group_by("country").agg([pl.len().alias("n")] + [pl.col(f).sum() for f in names]).sort("country").iter_rows(named=True) | |
| }, | |
| } | |
| m["n_query_s1"] = query_ids.height | |
| m["n_query_singletons"] = query_ids.height - n_ns | |
| # all-true-found per entity (the matcher's recall ceiling at entity level) | |
| per = gt_pairs.group_by("s1_id").agg(pl.len().alias("n_true")).join( | |
| hits.group_by("s1_id").agg(pl.len().alias("n_found")), on="s1_id", how="left" | |
| ).fill_null(0) | |
| m["entity_all_found"] = round(float((per.get_column("n_found") == per.get_column("n_true")).mean()), 5) if per.height else None | |
| return m | |
| def print_report(metrics: dict) -> None: | |
| ev = metrics.get("eval") | |
| print("\n================ BLOCKING REPORT ================") | |
| print(f"countries: {', '.join(metrics['countries'])}") | |
| print(f"queried S1: {metrics['n_query_s1']:,} pool (all countries): {metrics['n_pool_total']:,}") | |
| print(f"candidate pairs: {metrics['n_pairs']:,} reduction ratio: {metrics['reduction_ratio']:.6f}") | |
| print(f"candidates per S1: {metrics['cands_per_s1']}") | |
| print("pairs per strategy:", {k: f"{v:,}" for k, v in metrics["pairs_per_strategy"].items()}) | |
| if not ev: | |
| return | |
| names = FLAG_COLS + ["union"] | |
| pr = ev["pair_recall"] | |
| cols = [("overall", pr["overall"])] | |
| cols += [(f"src={k}", v) for k, v in pr["by_source"].items()] | |
| cols += [(f"{k}", v) for k, v in pr["by_country"].items()] | |
| hdr = f"{'strategy':<14}" + "".join(f"{c[0][:13]:>14}" for c in cols) + f"{'ent_any':>10}{'only_this':>11}{'union_wo':>10}" | |
| print("\nPAIR RECALL (share of ground-truth pairs retrieved)") | |
| print(f"{'n_gt_pairs':<14}" + "".join(f"{c[1]['n_gt_pairs']:>14,}" for c in cols)) | |
| print(hdr) | |
| for f in names: | |
| row = f"{f:<14}" + "".join(f"{(c[1][f] or 0):>14.4f}" for c in cols) | |
| row += f"{ev['entity_any_found']['overall'][f] or 0:>10.4f}" | |
| if f != "union": | |
| row += f"{ev['pair_recall_only_this_strategy'][f] or 0:>11.4f}{ev['pair_recall_union_without'][f] or 0:>10.4f}" | |
| print(row) | |
| print(f"entities with ALL true matches retrieved: {ev['entity_all_found']}") | |
| print("by country x source (union):", {k: v["union"] for k, v in pr["by_country_source"].items()}) | |
| print(f"non-singleton queried entities: {ev['entity_any_found']['n_nonsingleton_entities']:,} singletons: {ev['n_query_singletons']:,}") | |
| if ev.get("recall_at_k"): | |
| print("\nPAIR RECALL @ k (per strategy, share of all ground-truth pairs)") | |
| for st_, d in ev["recall_at_k"].items(): | |
| print(f" {st_:<9}" + " ".join(f"@{k}:{v:.4f}" for k, v in d.items())) | |
| if ev.get("sweeps"): | |
| print("\nSWEEPS (computed from the uncapped retrieval; k_xF scales every forward K by F)") | |
| print(f" {'config':<18}{'union_rec':>10}{'pairs':>14}{'mean/S1':>9}{'p50':>6}{'p90':>6}{'p99':>6}{'max':>7}") | |
| for name, d in ev["sweeps"].items(): | |
| c = d["cands_per_s1"] | |
| print(f" {name:<18}{d['union_pair_recall'] or 0:>10.4f}{d['pairs']:>14,}{c.get('mean', 0):>9.1f}" | |
| f"{c.get('p50', 0):>6.0f}{c.get('p90', 0):>6.0f}{c.get('p99', 0):>6.0f}{c.get('max', 0):>7}") | |
| # -------------------------------------------------------------------------------------------- | |
| # main | |
| # -------------------------------------------------------------------------------------------- | |
| def parse_args(argv=None): | |
| p = argparse.ArgumentParser(description=__doc__.split("\n\n")[0], formatter_class=argparse.ArgumentDefaultsHelpFormatter) | |
| p.add_argument("--s1", default=None, help="Source-1 TSV (not needed with --norm-dir)") | |
| p.add_argument("--s2", default=None) | |
| p.add_argument("--s3", default=None) | |
| p.add_argument( | |
| "--norm-dir", | |
| default=None, | |
| help="read pre-normalised DIR/{s1,s2,s3}.parquet (or t1,t2,t3 with --split test) from " | |
| "scripts/preprocess_normalize.py instead of the TSVs + light normaliser", | |
| ) | |
| p.add_argument("--split", choices=["train", "test"], default="train", help="which tables to read from --norm-dir") | |
| p.add_argument("--gt", default=None, help="train_ground_truth.tsv; enables recall metrics and is_match column") | |
| p.add_argument("--out", required=True, help="output parquet; metrics go to <out stem>.metrics.json") | |
| p.add_argument("--max-s1", type=int, default=None, help="random S1 subsample (pool stays FULL)") | |
| p.add_argument("--seed", type=int, default=13) | |
| p.add_argument("--k-name", type=int, default=20) | |
| p.add_argument("--k-nameaddr", type=int, default=20) | |
| p.add_argument("--k-addr", type=int, default=15) | |
| p.add_argument("--k-word", type=int, default=10) | |
| p.add_argument("--reverse-k", type=int, default=3) | |
| p.add_argument( | |
| "--reverse-scope", | |
| choices=["full", "sample"], | |
| default="full", | |
| help="with --max-s1: reverse search against the full country S1 (exact, costs a full reverse pass) " | |
| "or only the sample (fast, overstates reverse recall)", | |
| ) | |
| p.add_argument( | |
| "--reverse-cap", | |
| type=int, | |
| default=0, | |
| help="keep at most this many reverse-only pairs per S1 (highest nameaddr cosine); 0 = keep all. " | |
| "The metrics JSON has a sweep over caps to choose it", | |
| ) | |
| p.add_argument("--workers", type=int, default=min(30, os.cpu_count() or 1)) | |
| p.add_argument("--country-filter", default=None, help="comma-separated countries to process") | |
| p.add_argument("--normalizer", default=None, help="pkg.module:function hook (see module docstring)") | |
| p.add_argument("--backend", choices=["auto", "sdt", "scipy"], default="auto") | |
| p.add_argument("--max-df", type=float, default=0.02, help="drop features with df > max_df * (n_s1 + n_pool); 1 = off") | |
| p.add_argument("--min-sim", type=float, default=0.0, help="keep cosines strictly above this") | |
| p.add_argument("--hash-bits-char", type=int, default=22) | |
| p.add_argument("--hash-bits-word", type=int, default=24) | |
| p.add_argument("--vec-chunk", type=int, default=20000) | |
| p.add_argument("--sdt-rows", type=int, default=200000, help="query rows per sparse_dot_topn call") | |
| p.add_argument("--chunk-ops", type=float, default=5e7, help="scipy backend: multiply-adds per chunk") | |
| p.add_argument("--chunk-max-rows", type=int, default=20000, help="scipy backend: max query rows per chunk") | |
| p.add_argument("--fill-sims", action=argparse.BooleanOptionalAction, default=True) | |
| p.add_argument("--fill-chunk", type=int, default=200000) | |
| a = p.parse_args(argv) | |
| if not a.norm_dir and not (a.s1 and a.s2 and a.s3): | |
| p.error("give --s1 --s2 --s3, or --norm-dir") | |
| return a | |
| def main(argv=None) -> dict: | |
| args = parse_args(argv) | |
| if args.backend == "auto": | |
| omp = _sdt is not None and getattr(_sdt, "_has_openmp_support", True) | |
| args.backend = "sdt" if _sdt is not None and (omp or args.workers <= 1) else "scipy" | |
| if args.backend == "sdt" and _sdt is None: | |
| raise SystemExit("--backend sdt requested but sparse_dot_topn is not importable (pip install sparse-dot-topn)") | |
| args.workers = max(1, args.workers) | |
| log(f"config: {vars(args)}") | |
| # fork the vectoriser pool while the process is still small (fork happens on first submit) | |
| vpool = _fork_pool(args.workers) if args.workers > 1 else None | |
| if vpool is not None: | |
| vpool.submit(int).result() | |
| out_dir = os.path.dirname(os.path.abspath(args.out)) | |
| os.makedirs(out_dir, exist_ok=True) | |
| metrics_path = os.path.splitext(args.out)[0] + ".metrics.json" | |
| norm = load_normalizer(args.normalizer) | |
| if args.norm_dir: | |
| if args.normalizer or args.s1: | |
| log(" --norm-dir given: --s1/--s2/--s3 and --normalizer are ignored") | |
| paths = [os.path.join(args.norm_dir, f"{t}.parquet") for t in NORM_TABLES[args.split]] | |
| else: | |
| paths = [args.s1, args.s2, args.s3] | |
| with stage("load+normalise"): | |
| S = {} | |
| for tag, path in zip(("S1", "S2", "S3"), paths): | |
| if args.norm_dir: | |
| S[tag] = read_norm_parquet(path, tag) | |
| else: | |
| S[tag] = apply_normalizer(norm, read_source(path), tag) | |
| if args.country_filter: | |
| keep = [c.strip() for c in args.country_filter.split(",")] | |
| S[tag] = S[tag].filter(pl.col("country").is_in(keep)) | |
| log(f" {tag}: {S[tag].height:,} rows from {path}") | |
| s1 = S.pop("S1") | |
| pool = pl.concat([S.pop("S2"), S.pop("S3")]) | |
| rng = np.random.default_rng(args.seed) | |
| is_q = np.ones(s1.height, dtype=bool) | |
| if args.max_s1 and args.max_s1 < s1.height: | |
| is_q[:] = False | |
| is_q[rng.choice(s1.height, args.max_s1, replace=False)] = True | |
| s1 = s1.with_columns(pl.Series("is_query", is_q)) | |
| query_ids = s1.filter(pl.col("is_query")).select(pl.col("entity_id").alias("s1_id"), "country") | |
| log(f"queried S1: {query_ids.height:,} of {s1.height:,}; pool: {pool.height:,}") | |
| gt_pairs = None | |
| if args.gt: | |
| with stage("load_gt"): | |
| gt = read_tsv(args.gt) | |
| gt = gt.rename({gt.columns[0]: "s1_id", gt.columns[1]: "matched"}).select("s1_id", "matched") | |
| gt_pairs = ( | |
| gt.join(query_ids, on="s1_id", how="inner") | |
| .with_columns(pl.col("matched").str.split(",")) | |
| .explode("matched") # empty lists -> null row, removed by the filter below | |
| .with_columns(pl.col("matched").str.strip_chars()) | |
| .filter(pl.col("matched").str.len_chars() > 0) | |
| .select("s1_id", pl.col("matched").alias("cand_id"), "country", pl.col("matched").str.slice(0, 2).alias("src")) | |
| .unique(["s1_id", "cand_id"]) | |
| ) | |
| n_missing = query_ids.height - gt.join(query_ids, on="s1_id", how="inner").height | |
| log(f" gt pairs for queried S1: {gt_pairs.height:,}; queried S1 absent from gt file: {n_missing:,}") | |
| del gt | |
| countries = sorted(s1.get_column("country").unique().to_list()) | |
| metrics: dict = {"config": vars(args), "countries": countries, "per_country": {}} | |
| writer = None | |
| per_s1_all, hits_all = [], [] | |
| sweep_acc: dict = {"recall_at_k": {}, "configs": {}} | |
| total_pairs, all_pairs_space = 0, 0 | |
| pps = {c: 0 for c in FLAG_COLS} | |
| try: | |
| import pyarrow.parquet as pq | |
| for country in countries: | |
| s1c = s1.filter(pl.col("country") == country) | |
| poolc = pool.filter(pl.col("country") == country) | |
| q_idx = np.flatnonzero(s1c.get_column("is_query").to_numpy()).astype(np.int64) | |
| if len(q_idx) == 0: | |
| continue | |
| all_pairs_space += len(q_idx) * poolc.height | |
| if poolc.height == 0: | |
| per_s1_all.append(np.zeros(len(q_idx), dtype=np.int64)) | |
| for acc in sweep_acc["configs"].values(): | |
| acc["per_s1"].append(np.zeros(len(q_idx), dtype=np.int64)) | |
| metrics["per_country"][country] = {"n_s1_query": int(len(q_idx)), "n_pool": 0, "n_pairs": 0} | |
| continue | |
| log(f"=== {country}: S1 {s1c.height:,} (queried {len(q_idx):,}) x pool {poolc.height:,} ===") | |
| gtc = gt_pairs.filter(pl.col("country") == country) if gt_pairs is not None else None | |
| out, per_s1, cst = block_country(country, s1c, poolc, q_idx, args, vpool, gtc) | |
| sw = cst.pop("sweeps", None) | |
| if sw: | |
| for st_, d in sw["recall_at_k"].items(): | |
| acc = sweep_acc["recall_at_k"].setdefault(st_, {}) | |
| for k, v in d.items(): | |
| acc[k] = acc.get(k, 0) + v | |
| for name, d in sw["configs"].items(): | |
| acc = sweep_acc["configs"].setdefault(name, {"pairs": 0, "true": 0, "per_s1": []}) | |
| acc["pairs"] += d["pairs"] | |
| acc["true"] += d["true"] | |
| acc["per_s1"].append(d["per_s1"]) | |
| if gtc is not None: | |
| cst["gt_pairs_not_in_country_pool"] = int(gtc.filter(~pl.col("cand_id").is_in(poolc.get_column("entity_id"))).height) | |
| hits_all.append(out.filter(pl.col("is_match")).select(["s1_id", "cand_id", "country", "src"] + FLAG_COLS)) | |
| with stage(f"{country}/write"): | |
| tbl = out.to_arrow() | |
| if writer is None: | |
| writer = pq.ParquetWriter(args.out, tbl.schema, compression="zstd") | |
| writer.write_table(tbl.cast(writer.schema)) | |
| del tbl | |
| per_s1_all.append(per_s1) | |
| total_pairs += out.height | |
| for c in FLAG_COLS: | |
| pps[c] += cst["pairs_per_strategy"][c] | |
| metrics["per_country"][country] = cst | |
| del out, s1c, poolc | |
| gc.collect() | |
| if writer is None: # nothing produced: write an empty file with the schema | |
| empty = pl.DataFrame( | |
| {"s1_id": [], "cand_id": [], "country": [], "src": []}, schema={c: pl.Utf8 for c in ["s1_id", "cand_id", "country", "src"]} | |
| ).with_columns([pl.lit(None, dtype=pl.Float32).alias(c) for c in SIM_COLS] + [pl.lit(None, dtype=pl.Boolean).alias(c) for c in FLAG_COLS]) | |
| empty.write_parquet(args.out) | |
| finally: | |
| if writer is not None: | |
| writer.close() | |
| if vpool is not None: | |
| vpool.shutdown(wait=False, cancel_futures=True) | |
| per_s1 = np.concatenate(per_s1_all) if per_s1_all else np.zeros(0, dtype=np.int64) | |
| metrics.update( | |
| n_query_s1=int(query_ids.height), | |
| n_pool_total=int(pool.height), | |
| n_pairs=int(total_pairs), | |
| all_within_country_pairs=int(all_pairs_space), | |
| reduction_ratio=(1.0 - total_pairs / all_pairs_space) if all_pairs_space else None, | |
| cands_per_s1=_dist(per_s1), | |
| pairs_per_strategy=pps, | |
| ) | |
| if gt_pairs is not None: | |
| with stage("evaluate"): | |
| hits = pl.concat(hits_all) if hits_all else pl.DataFrame(schema={"s1_id": pl.Utf8, "cand_id": pl.Utf8, "country": pl.Utf8, "src": pl.Utf8, **{c: pl.Boolean for c in FLAG_COLS}}) | |
| metrics["eval"] = evaluate(gt_pairs, hits, query_ids) | |
| n_gt = gt_pairs.height | |
| metrics["eval"]["recall_at_k"] = { | |
| st_: {str(k): round(v / n_gt, 5) for k, v in sorted(d.items())} for st_, d in sweep_acc["recall_at_k"].items() | |
| } if n_gt else {} | |
| metrics["eval"]["sweeps"] = { | |
| name: { | |
| "union_pair_recall": round(d["true"] / n_gt, 5) if n_gt else None, | |
| "pairs": d["pairs"], | |
| "cands_per_s1": _dist(np.concatenate(d["per_s1"])) if d["per_s1"] else {}, | |
| } | |
| for name, d in sweep_acc["configs"].items() | |
| } | |
| own, kids = _peak_gb() | |
| metrics["timings_s"] = {k: round(v, 2) for k, v in TIMINGS.items()} | |
| metrics["total_seconds"] = round(time.time() - _T0, 1) | |
| metrics["peak_rss_gb"] = {"main": round(own, 2), "largest_child": round(kids, 2)} | |
| with open(metrics_path, "w") as f: | |
| json.dump(metrics, f, indent=2, default=lambda o: o.item() if hasattr(o, "item") else str(o)) | |
| print_report(metrics) | |
| log(f"wrote {args.out} and {metrics_path}; peak rss main={own:.2f}GB child={kids:.2f}GB") | |
| return metrics | |
| if __name__ == "__main__": | |
| main() | |