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#!/usr/bin/env python3
"""Select rows of the Agentic Env Index, download the files they point to and check them against their rows.
The index is a set of Parquet tables (one row per downloadable item). This script runs one DuckDB query over
them (the default filter plus your own conditions), rebuilds each selected row into a full pointer with
meta/sources.json, downloads the item and checks it against what the row records. It writes the files under
--out and a manifest (fetch_manifest.jsonl) with one line per selected row.
What is checked: a row with hashes has its size (when known) and every hash checked. Some sources publish no
hash; such a row has its size checked when the size is known, and its manifest line says checked "size only"
and carries the sha256 computed on download (unverified says so). A row with neither a hash nor a size is
downloaded within the cap and only its sha256 is computed (manifest fields size_unknown and unverified).
Rolling files (files the source regenerates in place, such as the lichess puzzle and evaluation databases,
or a row whose source_meta has rolling set) carry no hash and their size changes between the index and the
download: a size that differs is not a failure, the manifest line says checked "rolling file, size changed"
with the size the row records in expected_bytes, and the download may grow up to the cap.
Examples:
python fetch.py --tag data-processing --ext csv --limit 50 --out ./files
python fetch.py --source pypi --tier yes --max-size 1000000 --limit 20 --dry-run
python fetch.py --starter office-documents --out ./starter-documents
python fetch.py --data ./local-copy --where "media_type = 'application/pdf'" --limit 5
python fetch.py --source govdocs1-files --ext pdf --limit 20 --check-content --out ./govdocs
Reading the index from the Hub (the default, hf://datasets/...) starts by asking the Hub API for the commit
the main branch points to and then reads every table at that commit (hf://datasets/<repo>@<commit>/...), so a
long query is not split across an update of the index. If the commit cannot be read, the script prints one
warning line and reads the main branch. A --data root that already names a revision (@...) is read as given.
Requirements: Python 3.9 or newer and the duckdb package (pip install duckdb). Downloads use only the
standard library (plus sevenzip.py for 7z members and the zstandard package for --decompress of .zst).
DuckDB spill files are capped at 100GB by default; DUCKDB_MAX_TEMP changes that limit.
Ways of fetching that the script supports (the unit column of meta/sources.json says which one a source uses):
whole files over HTTP(S) (s3:// and hf:// addresses are turned into their public HTTPS form); byte ranges
(HTTP Range, the server must answer 206); WARC or ARC records (the range is one gzip member: it is
decompressed, the WARC and HTTP headers are removed and the payload hash is checked); members of zip
archives (the local header and the compressed bytes are read with Range requests, then inflated and checked
against size and CRC32); API responses (the body field is taken from the JSON response). Members of packages:
wheels, jars and other zip files through their central directory (Range requests); sdists, npm .tgz and
.crate files by downloading the whole package (within the cap; kept in a temporary directory for the run)
and taking the member out; members of 7z archives with sevenzip.py next to this script (a solid block is
decoded from its start up to the member, within the cap). Members of tar archives stored as gzip (the arXiv
source bundles): the range is one gzip member, decompressed and checked against the CRC32 and length of its
trailer. Single lichess games (rows with a game id): the public export API, one request per second and a full
minute of waiting after HTTP 429; rows without a game id are fetched as the files they point to.
The default filter removes duplicate copies of the same file (meta/duplicates.parquet) and rows found in
public benchmark tasks (meta/bench_overlap.parquet). Only rows of files that were compared with the benchmark
list can be found there; meta/bench_checked.parquet says which files and collections were compared, and its
column default_keep says whether the default filter keeps the rest (docs/selecting.md says which benchmarks,
up to when, and how this copy of the repository handles rows that were not compared). Of rows with the same
hash one copy is kept; rows of a superseded snapshot are removed; of rows that share a natural key (source,
uri, range_offset, member_path) but differ in content, only the one from the latest batch is kept, and its
manifest line says natural_key_conflict. Truncated rows, empty files and rows of batches whose link check was
partial stay in. License tiers, sizes and versions do not remove rows; choose them with --tier, --where or the queries in
docs/selecting.md.
Sizes and caps: a cap applies only when fetching, it never removes a row from the selection. By default every
row has the overall cap (meta/size_caps.json: the 99th percentile of the sizes of all benchmark task files),
which guards against downloading a huge file by mistake. --cap per-class uses the cap of the row's content
class instead (the typical size of benchmark task files of that class; the largest among the row's tags), and
--max-size N uses N bytes for every row. A row whose known size is above its cap is not downloaded; a row of
unknown size (manifest field size_unknown) is downloaded until the cap. Both are recorded with status
too_large, which is not a failure. --decompress also decompresses .gz, .bz2 and .zst files within the cap.
Requester-pays buckets (such as the arXiv source bundles on S3) are charged to your own AWS account: set
AWS_ACCESS_KEY_ID and AWS_SECRET_ACCESS_KEY (and AWS_SESSION_TOKEN for temporary credentials). The script
signs those requests itself (AWS Signature Version 4) and contains no credentials. Without them such rows are
skipped with the reason. Rows that need a login or an access request are skipped with the reason; any other
address form is reported as unsupported.
Content check (--check-content): after a verified download (and after --decompress) each file gets three
checks, recorded in the manifest field content_check. scanned_pdf: a PDF with no fonts (pdffonts) whose
first five pages hold fewer than 20 characters of text per page (pdftotext), most likely a scanned image.
error_page: an HTML, XML or plain text file whose title names an error (404, not found, access denied and
the like), or whose text is under 3000 characters and names one in its first 1500 characters. ext_mismatch:
the type that file --mime-type reports is not one of the types expected for the extension. Each check is
flagged, clean, not_applicable or skipped; a check is skipped when a system tool it needs (file, pdffonts,
pdftotext from poppler-utils) is not installed or fails on the file, and the reason is written in
content_check.skipped. A flagged or skipped check is not a failure and never changes the status.
The manifest status is one of ok, failed, too_large, skipped, unsupported (selected with --dry-run). The exit
code is 1 only when some row failed.
"""
from __future__ import annotations
import argparse
import bz2
import copy
import datetime
import gzip
import hashlib
import hmac
import http.client
import io
import json
import os
import posixpath
import re
import shutil
import socket
import struct
import subprocess
import sys
import tarfile
import tempfile
import time
import urllib.error
import urllib.parse
import urllib.request
import zlib
from pathlib import Path
DEFAULT_REPO = "Battam/agentic-env-index"
TIERS = ("yes", "conditional", "no", "unknown")
# hit classes of meta/bench_overlap.parquet that the default filter removes
OVERLAP_REMOVE = ("benchmark_copy", "task_file", "data_address")
CAP_MODES = ("overall", "per-class")
HASH_COLS = (("sha256", 32), ("sha1", 20), ("md5", 16), ("crc32", 4))
LICENSE_COLS = (("license_spdx", "spdx"), ("license_training_ok", "training_ok"),
("license_redistribution_ok", "redistribution_ok"), ("license_notes", "notes"))
ZIP_COLS = (("local_header_offset", "zip_local_header_offset"), ("compression_method", "zip_compression_method"),
("compressed_size", "zip_compressed_size"))
TRUNC_KEY = "content_truncated"
API_BODY_DEFAULT_FIELD = "items.0.body"
UA = "agentic-env-index-fetch/1 (+https://huggingface.co/datasets/" + DEFAULT_REPO + ")"
CHUNK = 1 << 20
UNKNOWN_SIZE_CAP = 100_000_000 # used only when a row carries no cap (a table without max_size_bytes)
RETRIES = 3
BACKOFF = 2.0
# DuckDB settings used when the tables are read over the network (hf:// or another URL). Hugging Face counts
# requests in 5-minute windows and answers 429 when a window is used up; DuckDB reads one file with several
# requests, and a full query touches thousands of files. Retries wait 2, 4, 8, ... 256 seconds (510 seconds
# in all), so the last retry comes after a whole window has passed; each request may take up to 120 seconds;
# fewer threads keep fewer requests in flight. These values are provisional: lower them if your reads never
# hit a limit, raise them if they still do.
HTTP_SETTINGS = {"http_retries": 8, "http_retry_wait_ms": 2000, "http_retry_backoff": 2, "http_timeout": 120}
REMOTE_THREADS = 4
ZIP_LOCAL_SIG = b"PK\x03\x04"
ZIP_LOCAL_LEN = 30
MANIFEST = "fetch_manifest.jsonl"
SIZE_ONLY = "size only"
ROLLING_CHANGED = "rolling file, size changed"
NO_HASH_MEMBER = "the source publishes no hash for this member; sha256 computed on download"
# files the source regenerates in place, so the size in the index goes stale (source, collection); a row can
# also say so itself with source_meta.rolling
ROLLING_FILES = frozenset({("lichess", "puzzle"), ("lichess", "eval")})
# ---------- SQL ----------
def sql_str(s: str) -> str:
return "'" + str(s).replace("'", "''") + "'"
IS_ROW = "starts_with(coalesce(p.extra, ''), '{\"_row\":')"
def _absent(key: str) -> str:
return f"coalesce(json_contains(json_extract(p.extra, '$._absent'), '\"{key}\"'), false)"
def tier_sql(field: str = "training_ok") -> str:
"""License tier of a row: the row's own license_override when it has one, otherwise the batch tier."""
anycol = "(" + " OR ".join(f"p.{c} IS NOT NULL" for c, _ in LICENSE_COLS) + ")"
own = (f"CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.license_override.{field}') "
f"WHEN json_type(p.extra, '$.license_override') IS NOT NULL "
f"THEN json_extract_string(p.extra, '$.license_override.{field}') "
f"WHEN {anycol} THEN p.license_{field} "
f"WHEN NOT {_absent('license_override')} THEN b.const_{field} END")
v = f"coalesce(nullif({own}, ''), b.{field})"
return f"(CASE WHEN {v} IN ('yes', 'conditional', 'no') THEN {v} ELSE 'unknown' END)"
def truncated_sql() -> str:
"""Why the stored content was cut short (NULL when it was not)."""
own = (f"CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.source_meta.{TRUNC_KEY}') "
f"WHEN json_type(p.extra, '$.source_meta') IS NOT NULL "
f"THEN json_extract_string(p.extra, '$.source_meta.{TRUNC_KEY}') "
f"WHEN NOT {_absent('source_meta')} THEN b.const_truncated END")
return f"nullif(coalesce(p.truncated, {own}), '')"
def own_sql(key: str, const: str, *, text: bool = True) -> str:
"""A top-level field of the full pointer: the row's own value (in extra) when it has one, otherwise the
source constant (a column of the batch table), unless the row lacks the field."""
f = "json_extract_string" if text else "json_extract"
return (f"(CASE WHEN {IS_ROW} THEN {f}(p.extra, '$._row.{key}') "
f"WHEN json_type(p.extra, '$.{key}') IS NOT NULL THEN {f}(p.extra, '$.{key}') "
f"WHEN NOT {_absent(key)} THEN {const} END)")
def source_meta_sql(key: str) -> str:
"""One key of source_meta; key is an SQL expression (a quoted name or a column such as b.meta_key)."""
return (f"(CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.source_meta.' || {key}) "
f"WHEN json_type(p.extra, '$.source_meta') IS NOT NULL "
f"THEN json_extract_string(p.extra, '$.source_meta.' || {key}) "
f"WHEN NOT {_absent('source_meta')} THEN json_extract_string(b.const_source_meta, '$.' || {key}) END)")
def meta_value_sql() -> str:
"""The source_meta value that some tags depend on (forum instance, mailing list, site), see b.meta_key."""
return f"(CASE WHEN b.meta_key IS NOT NULL THEN {source_meta_sql('b.meta_key')} END)"
def own_content_sql() -> str:
"""The row's own content categories as JSON text (NULL when the row takes them from its batch)."""
return f"CAST({own_sql('content', 'b.const_content', text=False)} AS VARCHAR)"
def hash_scope_sql() -> str:
"""What the hashes cover: file (default), http_payload (a WARC record's payload) or api_body."""
return f"coalesce({own_sql('hash_scope', 'b.const_hash_scope')}, 'file')"
def hash_sql(alg: str) -> str:
"""One hash of the row as lowercase hex (NULL when the row has none)."""
hx = f"coalesce(json_contains(json_extract(p.extra, '$._hx'), '\"{alg}\"'), false)"
return (f"(CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.hashes.{alg}') "
f"WHEN json_type(p.extra, '$.hashes.{alg}') IS NOT NULL THEN json_extract_string(p.extra, '$.hashes.{alg}') "
f"WHEN {hx} THEN NULL ELSE lower(hex(p.{alg})) END)")
def uri_sql() -> str:
"""The pointer's uri before the address swap (the uri column holds the directly downloadable address)."""
t, f, s = "b.uri_swap_to", "b.uri_swap_from", "b.uri_swap_suffix"
return (f"(CASE WHEN {t} IS NOT NULL AND json_extract_string(p.extra, '$._uri_orig') IS NULL THEN "
f"CASE WHEN starts_with(p.uri, {t}) AND ends_with(p.uri, {s}) AND length(p.uri) >= length({t}) + length({s}) "
f"THEN {f} || substr(p.uri, length({t}) + 1, length(p.uri) - length({t}) - length({s})) END "
f"ELSE p.uri END)")
def pid_sql() -> str:
"""pointer_id as written in meta/sources.json (layout.pointer_id), as one SQL expression."""
par = "p.parent_pointer_id"
rest = f"substr({par}, strpos({par}, ':') + strpos(substr({par}, strpos({par}, ':') + 1), ':') + 1)"
head = "p.source || ':' || p.collection || ':'"
tail = (f"array_to_string(list_slice(string_split({uri_sql()}, '/'), -b.pid_segments, -1), '/') || "
f"CASE WHEN b.pid_at_offset THEN '@' || CAST(p.range_offset AS VARCHAR) ELSE '' END")
return (f"(CASE WHEN {IS_ROW} THEN json_extract_string(p.extra, '$._row.pointer_id') "
f"WHEN {_absent('pointer_id')} THEN NULL "
f"WHEN json_type(p.extra, '$.pointer_id') IS NOT NULL THEN json_extract_string(p.extra, '$.pointer_id') "
f"WHEN json_type(p.extra, '$.pid') IS NOT NULL THEN {head} || json_extract_string(p.extra, '$.pid') "
f"WHEN {par} IS NOT NULL AND p.member_path IS NOT NULL THEN "
f"CASE WHEN length({par}) - length(replace({par}, ':', '')) >= 2 "
f"THEN {head} || {rest} || '!/' || p.member_path END "
f"WHEN b.pid_segments IS NOT NULL THEN {head} || {tail} END)")
def size_bucket_sql(col: str = "p.size_bytes") -> str:
return (f"(CASE WHEN {col} IS NULL OR {col} < 0 THEN 'unknown' WHEN {col} < 10000 THEN '<10KB' "
f"WHEN {col} < 1000000 THEN '10KB-1MB' WHEN {col} < 100000000 THEN '1MB-100MB' "
f"WHEN {col} < 1000000000 THEN '100MB-1GB' ELSE '>1GB' END)")
def same_key(a: str, b: str = "p") -> str:
return (f"{a}.source = {b}.source AND {a}.uri = {b}.uri AND {a}.range_offset IS NOT DISTINCT FROM {b}.range_offset "
f"AND {a}.member_path IS NOT DISTINCT FROM {b}.member_path")
def same_row(a: str, b: str = "p") -> str:
"""The same row: the same natural key, batch and place in the data files (row_file, row_index)."""
return (same_key(a, b) + f" AND {a}.batch = {b}.batch AND {a}.row_file = {b}.row_file "
f"AND {a}.row_index = {b}.row_index")
def rows_from(files: str) -> str:
"""SELECT over the row tables that adds where each row sits: row_file (the last three parts of the file path,
<source>/<batch>/<part file>) and row_index (the row number in that file, from 0). meta/duplicates.parquet
names rows by them; reading them costs nothing extra."""
return ("SELECT * EXCLUDE (filename, file_row_number), "
"regexp_extract(replace(filename, '\\', '/'), '[^/]+/[^/]+/[^/]+$') AS row_file, "
"file_row_number AS row_index "
f"FROM read_parquet({files}, union_by_name = true, filename = true, file_row_number = true)")
def natural_key_conflict_sql() -> str:
"""True for a row kept from a natural-key conflict: other rows with the same natural key (source, uri,
range_offset, member_path) but different content were removed as reason natural_key, naming this row as the
copy kept (the one from the latest batch)."""
return ("EXISTS (SELECT 1 FROM d WHERE d.reason = 'natural_key' AND d.keep_source = p.source "
"AND d.keep_batch = p.batch AND d.keep_row_file = p.row_file AND d.keep_row_index = p.row_index)")
def tag_key_sql() -> str:
"""Join condition between a row p and its lines in meta/tags.parquet (t)."""
return ("t.source = p.source AND t.batch = p.batch AND t.collection IS NOT DISTINCT FROM p.collection "
f"AND t.ext IS NOT DISTINCT FROM p.ext AND t.meta_value IS NOT DISTINCT FROM {meta_value_sql()} "
f"AND t.content IS NOT DISTINCT FROM {own_content_sql()}")
def cap_sql() -> str:
"""Per-class size cap of a row (--cap per-class): the largest cap among its tags (t.max_size_bytes, the
typical size of benchmark task files of that content class), otherwise the overall cap of its batch
(b.max_size_bytes). See meta/size_caps.json."""
return f"coalesce((SELECT max(t.max_size_bytes) FROM t WHERE {tag_key_sql()}), b.max_size_bytes)"
def checked_sql(col: str = "checked") -> str:
"""True for a row whose file and collection pass column col of meta/bench_checked.parquet (view c): col
checked says the rows were compared with the benchmark list, col default_keep says the default filter keeps
them. A file not listed there (not compared yet, or published after the table was built) takes the value of
the one row with scope unlisted; a collection listed with scope container (a collection whose name matches a benchmark and
that awaits a ruling) must pass too."""
return (f"coalesce((SELECT bool_and(c.{col}) FROM c WHERE c.scope = 'file' AND c.row_file = p.row_file), "
f"(SELECT bool_and(c.{col}) FROM c WHERE c.scope = 'unlisted'), false) AND NOT EXISTS (SELECT 1 FROM c "
f"WHERE c.scope = 'container' AND NOT c.{col} AND c.source = p.source AND "
f"c.collection = split_part(p.collection, '@', 1))")
def default_conditions(*, overlap: bool = True) -> list:
"""The default filter, one (name, SQL condition) per rule: it removes duplicate copies (meta/duplicates.parquet
keeps one copy of each file, and of rows sharing a natural key the one from the latest batch), copies of
benchmark data (meta/bench_overlap.parquet) and the rows meta/bench_checked.parquet does not keep by default
(column default_keep). Tables: p rows, b batches, d duplicates, o bench_overlap, c bench_checked.
License tiers, sizes and versions are not part of it."""
rem = ", ".join(sql_str(c) for c in OVERLAP_REMOVE)
out = [("not_duplicate", f"NOT EXISTS (SELECT 1 FROM d WHERE {same_row('d')})")]
if overlap:
out += [("not_in_benchmark_row", f"NOT EXISTS (SELECT 1 FROM o WHERE o.scope = 'row' AND o.hit_class IN ({rem}) "
f"AND {same_key('o')})"),
("not_in_benchmark_container", f"NOT EXISTS (SELECT 1 FROM o WHERE o.scope = 'container' AND "
f"o.hit_class IN ({rem}) AND o.source = p.source AND "
f"o.collection = split_part(p.collection, '@', 1))"),
("checked_for_benchmarks", checked_sql("default_keep"))]
return out
def tag_condition(tags) -> str:
vals = ", ".join(sql_str(t) for t in tags)
return f"EXISTS (SELECT 1 FROM t WHERE {tag_key_sql()} AND t.tag IN ({vals}))"
def fetch_order() -> str:
return ("sha256(concat_ws(chr(0), p.source, p.uri, coalesce(CAST(p.range_offset AS VARCHAR), ''), "
"coalesce(p.member_path, '')))")
def build_where(*, tags=(), exts=(), sources=(), tiers=None, min_size=None, max_size=None, where=None,
default=True, overlap=True) -> list:
"""The WHERE conditions of the selection. max_size is accepted for older callers and ignored: a size cap
applies when fetching (select_sql), it does not remove rows."""
conds = []
if default:
conds += [c for _, c in default_conditions(overlap=overlap)]
if tiers is not None:
conds.append(f"{tier_sql()} IN ({', '.join(sql_str(t) for t in tiers)})")
if min_size is not None:
conds.append(f"p.size_bytes >= {int(min_size)}")
if tags:
conds.append(tag_condition(tags))
if exts:
conds.append(f"lower(p.ext) IN ({', '.join(sql_str(e.lower().lstrip('.')) for e in exts)})")
if sources:
conds.append(f"p.source IN ({', '.join(sql_str(s) for s in sources)})")
if where:
conds.append(f"({where})")
return conds
def _root(args) -> str:
return args.data.rstrip("/") if args.data else f"hf://datasets/{args.repo}"
def _data_files(root: str, sources=()) -> str:
if sources:
return "[" + ", ".join(sql_str(f"{root}/data/{s}/*/*.parquet") for s in sources) + "]"
return sql_str(f"{root}/data/*/*/*.parquet")
def views_sql(root: str, *, sources=(), starter: str | None = None) -> list:
# starter files already carry row_file and row_index (copied from the row tables when they were built)
rows = (f"SELECT * FROM read_parquet({sql_str(f'{root}/starter/{starter}.parquet')}, union_by_name = true)"
if starter else rows_from(_data_files(root, sources)))
return [f"CREATE OR REPLACE VIEW p AS {rows}",
f"CREATE OR REPLACE VIEW b AS SELECT * FROM read_parquet({sql_str(root + '/meta/batches.parquet')})",
f"CREATE OR REPLACE VIEW d AS SELECT * FROM read_parquet({sql_str(root + '/meta/duplicates.parquet')})",
f"CREATE OR REPLACE VIEW o AS SELECT * FROM read_parquet({sql_str(root + '/meta/bench_overlap.parquet')})",
f"CREATE OR REPLACE VIEW t AS SELECT * FROM read_parquet({sql_str(root + '/meta/tags.parquet')})",
f"CREATE OR REPLACE VIEW c AS SELECT * FROM read_parquet({sql_str(root + '/meta/bench_checked.parquet')})"]
def select_sql(conds: list, limit: int | None = None, max_size: int | None = None, cap_mode: str = "overall") -> str:
"""The rows to fetch, each with size_cap_bytes (the most bytes written for the row: --max-size when given,
otherwise the overall cap of its batch, or with cap_mode per-class the row's class cap from cap_sql),
batch_cap_bytes (the most bytes downloaded for a whole package or read from a solid 7z block: the larger of
the two) and natural_key_conflict (natural_key_conflict_sql)."""
if cap_mode not in CAP_MODES:
raise ValueError(f"unknown cap mode {cap_mode}; use {', '.join(CAP_MODES)}")
cap = (str(int(max_size)) if max_size is not None
else cap_sql() if cap_mode == "per-class" else "b.max_size_bytes")
whole = str(int(max_size)) if max_size is not None else "b.max_size_bytes"
sql = (f"SELECT p.*, {cap} AS size_cap_bytes, {whole} AS batch_cap_bytes, "
f"{natural_key_conflict_sql()} AS natural_key_conflict "
"FROM p JOIN b ON b.source = p.source AND b.batch = p.batch")
if conds:
sql += "\nWHERE " + "\n AND ".join(conds)
sql += f"\nORDER BY {fetch_order()}"
if limit is not None:
sql += f"\nLIMIT {int(limit)}"
return sql
def is_remote(root: str) -> bool:
return "://" in root
HUB_API = "https://huggingface.co/api/datasets/"
HF_DATASETS = "hf://datasets/"
def repo_revision(repo: str, *, token: str | None = None, opener=None, timeout: float = 30) -> str:
"""The commit the main branch of the dataset repo points to now (the Hub API answers with it in field sha).
The token (or HF_TOKEN when none is given) is sent when there is one."""
token = os.environ.get("HF_TOKEN") if token is None else token
headers = {"Authorization": f"Bearer {token}"} if token else {}
with (opener or open_url)(f"{HUB_API}{repo}/revision/main", timeout, headers=headers) as r:
sha = str(json.loads(r.read()).get("sha") or "")
if not re.fullmatch(r"[0-9a-f]{40}", sha):
raise ValueError(f"the Hub API gave no commit for {repo}")
return sha
def pin_root(root: str, *, revision=None, warn=None) -> str:
"""hf://datasets/<owner>/<name>[/...] -> the same root at the current commit, hf://datasets/<owner>/<name>@<commit>
[/...] (DuckDB reads hf:// paths at a revision given after @), so every file of a long query comes from one
commit even when the repo gets new commits meanwhile. A root that already names a revision, and any other
root, is returned as it is. When the commit cannot be read the root is returned as it is (the main branch is
read) and warn gets one line saying why."""
root = root.rstrip("/")
if not root.startswith(HF_DATASETS):
return root
parts = root[len(HF_DATASETS):].split("/", 2)
if len(parts) < 2 or not all(parts[:2]) or "@" in parts[0] or "@" in parts[1]:
return root
repo = f"{parts[0]}/{parts[1]}"
try:
sha = str((revision or repo_revision)(repo) or "")
if not re.fullmatch(r"[0-9a-f]{40}", sha):
raise ValueError(f"not a commit id: {sha[:60]!r}")
except Exception as e: # noqa: BLE001 any failure falls back to main
(warn or _stderr)(f"could not read the current commit of {repo} ({type(e).__name__}: {e}); reading the "
f"main branch, which can change while the query runs")
return root
return f"{HF_DATASETS}{repo}@{sha}" + (f"/{parts[2]}" if len(parts) > 2 else "")
def _stderr(msg: str) -> None:
print(f"warning: {msg}", file=sys.stderr)
DUCKDB_MAX_TEMP = "100GB"
def max_temp_size() -> str:
return os.environ.get("DUCKDB_MAX_TEMP") or DUCKDB_MAX_TEMP
def http_settings(con, threads: int = REMOTE_THREADS) -> None:
"""Retries, backoff and timeout for network reads (HTTP_SETTINGS), and fewer threads. A setting this DuckDB
does not know is skipped with a note on stderr."""
for key, value in [*HTTP_SETTINGS.items(), ("threads", threads)]:
try:
con.execute(f"SET {key} = {int(value)}")
except Exception as e: # noqa: BLE001 (an older DuckDB, or the httpfs extension could not be loaded)
print(f"note: could not set {key}: {type(e).__name__}: {str(e).splitlines()[0][:200]}", file=sys.stderr)
def connect(memory_limit: str | None = None, temp_dir: str | None = None, settings: dict | None = None, *,
remote: bool = False, token: str | None = None):
"""A DuckDB connection. remote: the tables are read over the network (see HTTP_SETTINGS). token: the Hugging
Face token to read with; without one the HF_TOKEN environment variable is used when set."""
try:
import duckdb
except ImportError:
sys.exit("fetch.py needs the duckdb package: pip install duckdb")
con = duckdb.connect()
merged = {"max_temp_directory_size": max_temp_size(), **(settings or {})}
for key, value in merged.items():
con.execute(f"SET {key} = {sql_str(value)}")
if memory_limit:
con.execute(f"SET memory_limit = {sql_str(memory_limit)}")
if temp_dir:
con.execute(f"SET temp_directory = {sql_str(temp_dir)}")
if remote:
http_settings(con)
token = token or os.environ.get("HF_TOKEN")
if token:
try:
con.execute(f"CREATE SECRET hf_token (TYPE huggingface, TOKEN {sql_str(token)})")
except Exception as e: # noqa: BLE001 (keep the token out of the message)
raise RuntimeError(f"could not register the Hugging Face token: {type(e).__name__}: "
f"{str(e).replace(token, '***')}") from None
return con
def load_specs(con, root: str) -> dict:
text = con.execute(f"SELECT content FROM read_text({sql_str(root + '/meta/sources.json')})").fetchone()[0]
return {s["source"]: s["layout"] for s in json.loads(text)["sources"]}
# ---------- one table row -> the full pointer ----------
def derive_pid(rule, source, collection, uri, offset):
if not rule or not isinstance(source, str) or not isinstance(collection, str) or not isinstance(uri, str):
return None
tail = "/".join(uri.split("/")[-int(rule["segments"]):])
if rule.get("at_offset"):
if not (isinstance(offset, int) and not isinstance(offset, bool)):
return None
tail += f"@{offset}"
return f"{source}:{collection}:{tail}"
def member_pid(source, collection, parent, member):
if not all(isinstance(v, str) for v in (source, collection, parent, member)) or parent.count(":") < 2:
return None
return f"{source}:{collection}:{parent.split(':', 2)[2]}!/{member}"
def derive_alts(rule, uri):
if not rule or not isinstance(uri, str):
return None
out = []
for f, t, suf in rule["pairs"]:
if not uri.startswith(f):
return None
out.append(t + uri[len(f):] + suf)
return out
def derive_hash(seg, uri):
if not isinstance(uri, str):
return None
parts = uri.split("/")
k, j = seg
if k > len(parts):
return None
return "".join(parts[-k:len(parts) - j])
def unswap(rule, stored):
f, t, suf = rule["pairs"][0]
if not isinstance(stored, str) or not stored.startswith(t) or not stored.endswith(suf) \
or len(stored) < len(t) + len(suf):
return None
return f + stored[len(t):len(stored) - len(suf)]
def _hex(v):
return v.hex() if isinstance(v, (bytes, bytearray)) else v
def restore(col: dict, spec: dict) -> dict:
"""One table row (column name -> value) and the source's layout from meta/sources.json -> the full pointer."""
x = json.loads(col["extra"]) if col.get("extra") else {}
if "_row" in x:
return x["_row"]
r = copy.deepcopy(spec["constants"])
r["source"] = col["source"]
for k in ("collection", "ext", "size_bytes"):
r[k] = col.get(k)
arule = spec.get("alt_uris")
uri = col["uri"]
if arule and arule["swap"] and not x.get("_uri_orig"):
r["uri"] = unswap(arule, uri)
r["alt_uris"] = derive_alts(arule, r["uri"])
else:
r["uri"] = uri
if arule and not x.get("_uri_orig"):
a = derive_alts(arule, uri)
if a is not None:
r["alt_uris"] = a
r["hashes"] = {n: _hex(col[n]) for n, _ in HASH_COLS if col.get(n) is not None}
for h, seg in (spec.get("hash_from_uri") or {}).items():
v = derive_hash(seg, r["uri"])
if v is not None:
r["hashes"][h] = v
for h in x.pop("_hx", []):
r["hashes"].pop(h, None)
r["hashes"].update(x.pop("hashes", {}))
for k in ("media_type", "member_path", "parent_pointer_id"):
if col.get(k) is not None:
r[k] = col[k]
if col.get("zip_local_header_offset") is not None:
r["zip_entry"] = {k: col.get(c) for k, c in ZIP_COLS}
if col.get("range_offset") is not None:
r["range"] = {"offset": col["range_offset"], "length": col.get("range_length")}
if col.get("origin_url") is not None:
r["origin"] = {"url": col["origin_url"]}
if col.get("origin_time") is not None:
r["origin"]["captured_at"] = col["origin_time"]
lo = {k: col[c] for c, k in LICENSE_COLS if col.get(c) is not None}
if lo:
r["license_override"] = lo
if "pointer_id" in x:
pid = x.pop("pointer_id")
elif "pid" in x:
pid = f"{r['source']}:{r['collection']}:{x.pop('pid')}"
elif col.get("parent_pointer_id") is not None and col.get("member_path") is not None:
pid = member_pid(r["source"], r["collection"], col["parent_pointer_id"], col["member_path"])
else:
pid = derive_pid(spec.get("pointer_id"), r["source"], r["collection"], r["uri"], col.get("range_offset"))
r["pointer_id"] = pid
absent = x.pop("_absent", [])
x.pop("_uri_orig", None)
r.update(x)
if col.get("truncated") is not None:
sm = dict(r.get("source_meta") or {})
sm[TRUNC_KEY] = col["truncated"]
r["source_meta"] = sm
for k in absent:
r.pop(k, None)
return r
# ---------- download and verify ----------
class Unsupported(Exception):
pass
def to_http(uri: str):
if uri.startswith(("https://", "http://", "file://")):
return uri
if uri.startswith("s3://"):
bucket, _, key = uri[5:].partition("/")
return f"https://s3.amazonaws.com/{bucket}/{urllib.parse.quote(key)}"
if uri.startswith("hf://datasets/"):
rest = uri[len("hf://datasets/"):]
repo_rev, _, path = rest.partition("/")
if "@" not in repo_rev:
name_rev, _, path = path.partition("/")
repo_rev = repo_rev + "/" + name_rev
repo, _, rev = repo_rev.partition("@")
return f"https://huggingface.co/datasets/{repo}/resolve/{rev or 'main'}/{urllib.parse.quote(path)}"
return None
def candidates(row: dict) -> list:
out = []
for u in [row.get("uri"), *(row.get("alt_uris") or [])]:
h = to_http(u) if isinstance(u, str) else None
if h and h not in out:
out.append(h)
first = to_http(row["uri"]) if isinstance(row.get("uri"), str) else None
if str(row.get("uri")).startswith("s3://") and first in out and len(out) > 1:
out.remove(first)
out.append(first)
return out
def dest_path(root: Path, row: dict) -> Path:
pid = row.get("pointer_id")
if isinstance(pid, str) and pid.count(":") >= 2:
rel = pid.split(":", 2)[2]
else:
key = "\0".join(str(row.get(k)) for k in ("source", "uri", "range", "member_path"))
rel = hashlib.sha256(key.encode("utf-8")).hexdigest()[:24]
parts = [p for p in posixpath.normpath(rel).split("/") if p not in ("", ".")]
if not parts or ".." in parts:
raise ValueError(f"unsafe relative path: {rel}")
return Path(root, str(row.get("source")), str(row.get("collection")), *parts)
class Hasher:
def __init__(self, size):
self.h = {n: hashlib.new(n) for n in ("md5", "sha1", "sha256", "sha512")}
self.git = hashlib.sha1(f"blob {size}\0".encode()) if size is not None else None
self.crc = 0
self.n = 0
def update(self, b: bytes) -> None:
for h in self.h.values():
h.update(b)
if self.git is not None:
self.git.update(b)
self.crc = zlib.crc32(b, self.crc)
self.n += len(b)
def digests(self) -> dict:
out = {n: h.hexdigest() for n, h in self.h.items()}
out["git_blob_sha1"] = self.git.hexdigest() if self.git else ""
out["crc32"] = f"{self.crc & 0xFFFFFFFF:08x}"
return out
def _etag_md5(etag):
if not etag:
return None
e = str(etag).strip().strip('"').replace("&quot;", "")
return e if len(e) == 32 and all(c in "0123456789abcdef" for c in e) else None
def verify(row: dict, size: int, got: dict, names=("md5", "sha1", "sha256", "sha512", "git_blob_sha1")):
"""None when the size and every published hash match, otherwise the reason."""
if row.get("size_bytes") is not None and size != row["size_bytes"]:
return f"size differs: expected {row['size_bytes']}, got {size}"
hashes = row.get("hashes") or {}
if not hashes and row.get("hash_source") == "computed_on_fetch":
return None
checked = 0
for name in names:
want = str(hashes.get(name) or "").lower()
if want:
checked += 1
if got[name] != want:
return f"{name} differs: expected {want}, got {got[name]}"
et = _etag_md5(hashes.get("etag"))
if et:
checked += 1
if got["md5"] != et:
return f"etag (single-part md5) differs: expected {et}, got {got['md5']}"
return None if checked else "no hash that can be checked"
def is_rolling(row: dict) -> bool:
"""True for a file the source regenerates in place (ROLLING_FILES, or source_meta.rolling on the row)."""
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
return bool(sm.get("rolling")) or (row.get("source"), row.get("collection")) in ROLLING_FILES
def no_hash_fields(row: dict, res: dict, sha256: str, note: str) -> dict:
"""The manifest fields of a row without hashes: unverified, the computed sha256, and checked "size only"
when its size was checked."""
if row.get("hashes"):
return res
res["unverified"] = note
res["sha256"] = sha256
if row.get("size_bytes") is not None:
res["checked"] = SIZE_ONLY
return res
def range_header(rng) -> str:
"""rng is (offset, length); offset None asks for the last length bytes."""
if rng[0] is None:
return f"bytes=-{rng[1]}"
return f"bytes={rng[0]}-{rng[0] + rng[1] - 1}"
def open_url(url: str, timeout: float, rng=None, headers=None):
"""rng is (offset, length), offset None for the last length bytes. HTTP gets a Range header and must answer
206. headers are extra request headers (the signed headers of a requester-pays request)."""
if url.startswith("file://"):
f = open(urllib.request.url2pathname(urllib.parse.urlparse(url).path), "rb")
if not rng:
return f
with f:
if rng[0] is None:
f.seek(0, 2)
f.seek(max(0, f.tell() - rng[1]))
else:
f.seek(rng[0])
return io.BytesIO(f.read(rng[1]))
headers = {"User-Agent": UA, **(headers or {})}
if rng:
headers["Range"] = range_header(rng)
r = urllib.request.urlopen(urllib.request.Request(url, headers=headers), timeout=timeout) # noqa: S310
if rng and getattr(r, "status", 206) != 206:
r.close()
raise Unsupported(f"the server ignored the Range request (HTTP {getattr(r, 'status', '?')})")
return r
def transient(e: BaseException) -> bool:
if isinstance(e, urllib.error.HTTPError):
return 500 <= e.code < 600
if isinstance(e, urllib.error.URLError):
r = e.reason
return isinstance(r, (ConnectionError, TimeoutError, socket.timeout)) or (
isinstance(r, str) and "timed out" in r)
return isinstance(e, (ConnectionError, TimeoutError, socket.timeout, http.client.IncompleteRead))
def _write(dest: Path, data: bytes) -> None:
part = dest.with_name(dest.name + ".part")
part.write_bytes(data)
os.replace(part, dest)
def _rng(row: dict):
r = row.get("range")
return (r["offset"], r["length"]) if isinstance(r, dict) and r.get("offset") is not None else None
class TooLarge(Exception):
"""The item is larger than the row's cap; nothing is kept."""
def cap_of(row: dict) -> int:
"""The most bytes written for one row: its cap from the query (size_cap_bytes)."""
v = row.get("_size_cap")
return int(v) if v is not None else UNKNOWN_SIZE_CAP
def whole_cap_of(row: dict) -> int:
"""The most bytes downloaded or decoded on the way to one row (a whole package, a solid 7z block, a
compressed member): the larger of the row's cap and its batch cap."""
vals = [int(v) for v in (row.get("_size_cap"), row.get("_batch_cap")) if v is not None]
return max(vals) if vals else UNKNOWN_SIZE_CAP
def fetch_file(row, dest, url, timeout, opener):
want = row.get("size_bytes")
rolling = want is not None and not row.get("hashes") and _rng(row) is None and is_rolling(row)
limit = max(want, cap_of(row)) if rolling else want if want is not None else cap_of(row)
h = Hasher(want)
part = dest.with_name(dest.name + ".part")
try:
with opener(url, timeout, _rng(row)) as src, open(part, "wb") as out:
while True:
b = src.read(CHUNK)
if not b:
break
h.update(b)
out.write(b)
if h.n > limit:
break
except BaseException:
part.unlink(missing_ok=True)
raise
if (want is None or rolling) and h.n > limit:
part.unlink(missing_ok=True)
raise TooLarge(f"rolling file: grew past the cap of {limit} bytes" if rolling
else f"unknown size: stopped after more than the cap of {limit} bytes")
changed = rolling and h.n != want
why = verify({**row, "size_bytes": None} if changed else row, h.n, h.digests())
if why:
part.unlink(missing_ok=True)
return {"status": "failed", "reason": why, "url": url}
os.replace(part, dest)
res = no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": h.n, "url": url},
h.digests()["sha256"], "the source publishes no hash; sha256 computed on download")
if changed:
res["checked"] = ROLLING_CHANGED
res["expected_bytes"] = want
return res
# WARC / ARC records
def _split_head(block: bytes) -> tuple:
a, b = block.find(b"\r\n\r\n"), block.find(b"\n\n")
if a < 0 and b < 0:
return block, b""
if b < 0 or (0 <= a < b):
return block[:a], block[a + 4:]
return block[:b], block[b + 2:]
def _headers(text: bytes) -> dict:
out = {}
for line in text.decode("latin-1").splitlines()[1:]:
k, sep, v = line.partition(":")
if sep:
out[k.strip().lower()] = v.strip()
return out
def parse_record(raw: bytes) -> dict:
data = gzip.decompress(raw)
if data.startswith(b"WARC/"):
head, _, rest = data.partition(b"\r\n\r\n")
wh = _headers(head)
block = rest[:int(wh.get("content-length", len(rest)))]
else:
first, _, rest = data.partition(b"\n")
block = rest[:int(first.split()[-1])]
http_head, payload = _split_head(block) if block.startswith(b"HTTP/") else (b"", block)
return {"http_headers": _headers(http_head) if http_head else {}, "payload": payload}
def dechunk(body: bytes) -> bytes:
out, pos = bytearray(), 0
while pos < len(body):
eol = body.find(b"\r\n", pos)
if eol < 0:
break
n = int(body[pos:eol].split(b";")[0].strip() or b"0", 16)
if n == 0:
break
out += body[eol + 2:eol + 2 + n]
pos = eol + 2 + n + 2
return bytes(out)
def payload_variants(rec: dict) -> list:
body = rec["payload"]
if "chunked" in rec["http_headers"].get("transfer-encoding", "").lower():
return [("dechunked_payload", dechunk(body)), ("payload", body)]
return [("payload", body)]
def verify_payload(row: dict, data: bytes):
want = row.get("payload_size_bytes")
if want is not None and len(data) != want:
return f"payload size differs: expected {want}, got {len(data)}"
h = Hasher(len(data))
h.update(data)
got = h.digests()
checked = 0
for name in ("md5", "sha1", "sha256"):
w = str((row.get("hashes") or {}).get(name) or "").lower()
if w:
checked += 1
if got[name] != w:
return f"{name} differs: expected {w}, got {got[name]}"
return None if checked else "no hash that can be checked"
def fetch_payload(row, dest, url, timeout, opener):
if _rng(row) is None or row.get("size_bytes") is None:
raise Unsupported("a WARC record row needs a byte range and a size")
with opener(url, timeout, _rng(row)) as src:
raw = src.read(row["size_bytes"] + 1)
if len(raw) != row["size_bytes"]:
return {"status": "failed", "url": url, "reason": f"size differs: expected {row['size_bytes']}, got {len(raw)}"}
try:
rec = parse_record(raw)
except Exception as e: # noqa: BLE001 (a cut or misplaced record)
return {"status": "failed", "url": url, "reason": f"cannot parse the record: {type(e).__name__}: {e}"}
whys = []
for label, data in payload_variants(rec):
why = verify_payload(row, data)
if why is None:
_write(dest, data)
return {"status": "ok", "path": str(dest), "bytes": len(data), "matched_on": label, "url": url}
whys.append(f"{label}: {why}")
return {"status": "failed", "url": url, "reason": "; ".join(whys)}
# API responses
def extract_field(doc, path: str):
cur = doc
for part in path.split("."):
if isinstance(cur, list) and part.isdigit():
cur = cur[int(part)] if int(part) < len(cur) else None
elif isinstance(cur, dict):
cur = cur.get(part)
else:
return None
if cur is None:
return None
return cur
def fetch_api_body(row, dest, url, timeout, opener):
with opener(url, timeout, None) as src:
raw = src.read()
if raw[:2] == b"\x1f\x8b":
raw = gzip.decompress(raw)
try:
doc = json.loads(raw.decode("utf-8"))
except (UnicodeDecodeError, ValueError) as e:
return {"status": "failed", "url": url, "reason": f"the API response is not JSON: {e}"}
path = (row.get("source_meta") or {}).get("api_body_field") or API_BODY_DEFAULT_FIELD
v = extract_field(doc, path)
body = ("" if v is None else v if isinstance(v, str) else json.dumps(v, ensure_ascii=False)).encode("utf-8")
h = Hasher(len(body))
h.update(body)
why = verify(row, len(body), h.digests())
if why:
return {"status": "failed", "url": url, "reason": f"{path}: {why}"}
_write(dest, body)
return no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": len(body),
"matched_on": f"api_body:{path}", "url": url},
h.digests()["sha256"], "the source publishes no hash; sha256 computed on download")
# zip members
def _get_range(url, timeout, start, length, opener):
with opener(url, timeout, (start, length)) as r:
data = r.read(length + 1)
if len(data) != length:
raise Unsupported(f"range {start}+{length} returned {len(data)} bytes")
return data
def member_limit(row: dict) -> int:
"""The most bytes kept for one member: its size when the row knows it (a longer result then fails the size
check), otherwise the row's cap."""
return row["size_bytes"] if row.get("size_bytes") is not None else cap_of(row)
def _too_large_unknown(row: dict, size: int, limit: int) -> None:
if row.get("size_bytes") is None and size > limit:
raise TooLarge(f"the member has {size} bytes, more than the cap of {limit} bytes")
def _finish(row, dest, data, url, matched_on, names=("crc32", "md5", "sha1", "sha256")):
"""Check data against the row's size and hashes, write it to dest, -> the manifest fields."""
h = Hasher(len(data))
h.update(data)
why = verify(row, len(data), h.digests(), names=names)
if why:
return {"status": "failed", "url": url, "reason": why}
_write(dest, data)
return no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": len(data), "matched_on": matched_on,
"url": url},
h.digests()["sha256"], NO_HASH_MEMBER)
def _zip_member_bytes(url, timeout, opener, loff, method, csize, limit):
"""The bytes of one zip member (read with Range requests from its local header), at most limit + 1 of them;
None when the local header signature is wrong."""
head = _get_range(url, timeout, loff, ZIP_LOCAL_LEN, opener)
if head[:4] != ZIP_LOCAL_SIG:
return None
n, m = struct.unpack_from("<HH", head, 26)
start = loff + ZIP_LOCAL_LEN + n + m
raw = _get_range(url, timeout, start, csize, opener) if csize else b""
if method == 0:
return raw[:limit + 1]
if method == 8:
d = zlib.decompressobj(-15)
data = d.decompress(raw, limit + 1)
if len(data) <= limit and not d.unconsumed_tail:
data += d.flush()
return data
raise Unsupported(f"zip compression method {method}")
def fetch_member(row, dest, url, timeout, opener):
ze = row.get("zip_entry")
if not isinstance(ze, dict) or ze.get("local_header_offset") is None:
raise Unsupported("an archive member row without zip_entry")
limit = member_limit(row)
data = _zip_member_bytes(url, timeout, opener, ze["local_header_offset"], ze["compression_method"],
ze["compressed_size"], limit)
if data is None:
return {"status": "failed", "url": url, "reason": "the zip local header signature is wrong"}
_too_large_unknown(row, len(data), limit)
h = Hasher(len(data))
h.update(data)
why = verify(row, len(data), h.digests(), names=("crc32", "md5", "sha1", "sha256"))
if why:
return {"status": "failed", "url": url, "reason": why}
_write(dest, data)
return no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": len(data), "matched_on": "zip_member",
"url": url},
h.digests()["sha256"], NO_HASH_MEMBER)
# members of software packages: zip-based ones (wheel, jar, nupkg) through the central directory, tar-based
# ones (sdist, npm .tgz, .crate) by downloading the whole package within the cap
ZIP_SUFFIXES = (".whl", ".zip", ".jar", ".nupkg", ".egg")
TAR_SUFFIXES = (".tgz", ".tar.gz", ".crate", ".tar", ".tar.bz2", ".tbz2", ".tar.xz", ".txz")
ZIP_EOCD_SIG = b"PK\x05\x06"
ZIP64_LOCATOR_SIG = b"PK\x06\x07"
ZIP64_EOCD_SIG = b"PK\x06\x06"
ZIP_CD_SIG = b"PK\x01\x02"
ZIP_TAIL = 22 + 0xFFFF # end record plus the longest comment
ZIP_CD_MAX = 64_000_000
PACKAGE_CACHE_BYTES = 1_000_000_000 # packages kept on disk during one run, oldest dropped first
def package_kind(uri) -> str | None:
path = urllib.parse.urlsplit(str(uri or "")).path.lower()
if path.endswith(ZIP_SUFFIXES):
return "zip_package"
if path.endswith(TAR_SUFFIXES):
return "tar_package"
if path.endswith(".7z"):
return "sevenzip_member"
return None
def zip_central_directory(url, timeout, opener) -> bytes:
"""The central directory of a remote zip: the end record is found in the last 64 KB (one Range request),
zip64 archives through their locator. Some servers (files.pythonhosted.org) answer 416 when the file is
shorter than the suffix asked for; the whole file is then read instead, as it is under 64 KB."""
try:
with opener(url, timeout, (None, ZIP_TAIL)) as r:
tail = r.read(ZIP_TAIL + 1)
except urllib.error.HTTPError as e:
if e.code != 416:
raise
with opener(url, timeout, None) as r:
tail = r.read(ZIP_TAIL + 1)
if len(tail) > ZIP_TAIL:
raise Unsupported("the server refused the 64 KB tail range of a file longer than 64 KB") from None
i = tail.rfind(ZIP_EOCD_SIG)
if i < 0 or len(tail) - i < 22:
raise Unsupported("no zip end record in the last 64 KB")
n_entries, cd_size, cd_off = struct.unpack_from("<HII", tail, i + 10)
if n_entries == 0xFFFF or 0xFFFFFFFF in (cd_size, cd_off):
j = i - 20
if j < 0 or tail[j:j + 4] != ZIP64_LOCATOR_SIG:
raise Unsupported("zip64 archive without a zip64 locator")
rec = _get_range(url, timeout, struct.unpack_from("<Q", tail, j + 8)[0], 56, opener)
if rec[:4] != ZIP64_EOCD_SIG:
raise Unsupported("the zip64 end record signature is wrong")
cd_size, cd_off = struct.unpack_from("<QQ", rec, 40)
if cd_size > ZIP_CD_MAX:
raise Unsupported(f"the zip central directory has {cd_size} bytes, more than {ZIP_CD_MAX}")
return _get_range(url, timeout, cd_off, cd_size, opener) if cd_size else b""
def zip_find(cd: bytes, name: str):
"""-> {local_header_offset, compression_method, compressed_size, size, crc32} of the entry called name, or
None."""
pos = 0
while pos + 46 <= len(cd):
if cd[pos:pos + 4] != ZIP_CD_SIG:
raise Unsupported("the zip central directory is damaged")
flags, method = struct.unpack_from("<HH", cd, pos + 8)
crc, csize, usize = struct.unpack_from("<III", cd, pos + 16)
nlen, xlen, clen = struct.unpack_from("<HHH", cd, pos + 28)
loff = struct.unpack_from("<I", cd, pos + 42)[0]
raw = cd[pos + 46:pos + 46 + nlen]
extra = cd[pos + 46 + nlen:pos + 46 + nlen + xlen]
pos += 46 + nlen + xlen + clen
if raw.decode("utf-8" if flags & 0x800 else "cp437", "replace") != name:
continue
if 0xFFFFFFFF in (usize, csize, loff):
k = 0
while k + 4 <= len(extra):
hid, hlen = struct.unpack_from("<HH", extra, k)
if hid == 1:
vals = list(struct.unpack_from(f"<{hlen // 8}Q", extra, k + 4))
if usize == 0xFFFFFFFF and vals:
usize = vals.pop(0)
if csize == 0xFFFFFFFF and vals:
csize = vals.pop(0)
if loff == 0xFFFFFFFF and vals:
loff = vals.pop(0)
break
k += 4 + hlen
return {"local_header_offset": loff, "compression_method": method, "compressed_size": csize,
"size": usize, "crc32": crc}
return None
def fetch_zip_package(row, dest, url, timeout, opener):
name = row.get("member_path")
e = zip_find(zip_central_directory(url, timeout, opener), name)
if e is None:
return {"status": "failed", "url": url, "reason": f"{name} is not in the package's central directory"}
limit = member_limit(row)
_too_large_unknown(row, e["size"], limit)
data = _zip_member_bytes(url, timeout, opener, e["local_header_offset"], e["compression_method"],
e["compressed_size"], max(limit, e["size"]))
if data is None:
return {"status": "failed", "url": url, "reason": "the zip local header signature is wrong"}
if len(data) != e["size"] or zlib.crc32(data) & 0xFFFFFFFF != e["crc32"]:
return {"status": "failed", "url": url,
"reason": "the member does not match the size and CRC32 of the package's central directory"}
return _finish(row, dest, data, url, "zip_package")
_PACKAGES: dict = {"dir": None, "files": {}}
def clear_package_cache() -> None:
"""Delete the packages downloaded during this run."""
d, _PACKAGES["dir"] = _PACKAGES["dir"], None
_PACKAGES["files"].clear()
if d:
shutil.rmtree(d, ignore_errors=True)
def download_package(url, timeout, opener, limit) -> Path:
"""Download a whole package into a temporary directory kept for this run (reused for its other members);
stop with TooLarge after limit bytes."""
files = _PACKAGES["files"]
if url in files:
return files[url]
if _PACKAGES["dir"] is None:
_PACKAGES["dir"] = tempfile.mkdtemp(prefix="fetch-packages-")
path = Path(_PACKAGES["dir"], hashlib.sha256(url.encode("utf-8")).hexdigest()[:24])
n = 0
try:
with opener(url, timeout, None) as src, open(path, "wb") as out:
while True:
b = src.read(CHUNK)
if not b:
break
n += len(b)
if n > limit:
raise TooLarge(f"the package is larger than the cap of {limit} bytes; download stopped")
out.write(b)
except BaseException:
path.unlink(missing_ok=True)
raise
while files and sum(p.stat().st_size for p in files.values()) + n > PACKAGE_CACHE_BYTES:
old = next(iter(files))
files.pop(old).unlink(missing_ok=True)
files[url] = path
return path
def _tar_lookup(tf, name: str):
for n in (name, "./" + name, name[2:] if name.startswith("./") else None):
if n:
try:
return tf.getmember(n)
except KeyError:
continue
return None
def fetch_tar_package(row, dest, url, timeout, opener):
path = download_package(url, timeout, opener, whole_cap_of(row))
name = row.get("member_path")
limit = member_limit(row)
try:
tf = tarfile.open(path, "r:*")
except (tarfile.TarError, OSError, EOFError) as e:
return {"status": "failed", "url": url, "reason": f"cannot open the package as a tar archive: {e}"}
with tf:
m = _tar_lookup(tf, name)
if m is None:
return {"status": "failed", "url": url, "reason": f"{name} is not in the package"}
if not m.isfile():
return {"status": "failed", "url": url, "reason": f"{name} is not a regular file in the package"}
_too_large_unknown(row, m.size, limit)
f = tf.extractfile(m)
data = f.read(limit + 1) if f else b""
return _finish(row, dest, data, url, "tar_package")
# 7z members (the directory is read with Range requests; see sevenzip.py next to this script)
SEVENZIP_PIECE = 8 << 20
def _sevenzip():
try:
from . import sevenzip
except ImportError:
try:
import sevenzip
except ImportError:
raise Unsupported("7z members need sevenzip.py next to this script") from None
return sevenzip
def _range_pieces(url, timeout, opener, start, length):
end = start + length
for off in range(start, end, SEVENZIP_PIECE):
yield _get_range(url, timeout, off, min(SEVENZIP_PIECE, end - off), opener)
def fetch_sevenzip_member(row, dest, url, timeout, opener):
sz = _sevenzip()
name = row.get("member_path")
def read(off, ln):
return _get_range(url, timeout, off, ln, opener)
try:
sig = sz.parse_signature_header(read(0, sz.SIGNATURE_HEADER_LEN))
arc = sz.parse_header(sig, read(sig.header_pos, sig.next_header_size), read)
except sz.Unsupported7z as e:
raise Unsupported(f"7z directory: {e}") from None
except sz.Format7zError as e:
return {"status": "failed", "url": url, "reason": f"cannot read the 7z directory: {e}"}
e = next((x for x in arc.entries if x.name == name and not x.is_dir), None)
if e is None:
return {"status": "failed", "url": url, "reason": f"{name} is not in the 7z directory"}
limit = member_limit(row)
_too_large_unknown(row, e.size, limit)
if e.folder is None or e.size == 0:
return _finish(row, dest, b"", url, "sevenzip_member")
folder = arc.folders[e.folder]
pstart, plen = arc.folder_pack(e.folder)
need = e.offset_in_folder + e.size
whole = whole_cap_of(row)
if need > max(whole, e.size if row.get("size_bytes") is not None else 0):
raise TooLarge(f"the member ends {need} bytes into a solid 7z block, more than the cap of {whole} bytes")
try:
if folder.methods == ["copy"]:
data = read(pstart + e.offset_in_folder, e.size)
if e.crc32 is not None and zlib.crc32(data) & 0xFFFFFFFF != e.crc32:
raise sz.Format7zError(f"{name}: CRC32 differs")
else:
try:
data = b"".join(sz.iter_entry(folder, e, _range_pieces(url, timeout, opener, pstart, plen)))
except sz.Unsupported7z:
if plen > whole or folder.unpack_size > whole:
raise TooLarge(f"the 7z block ({folder.unpack_size} bytes, coders {','.join(folder.methods)}) "
f"must be decoded whole and is larger than the cap of {whole} bytes") from None
data = sz.extract(arc, sz.decode_folder(folder, read(pstart, plen)), e)
except sz.Unsupported7z as x:
raise Unsupported(f"7z block: {x}") from None
except sz.Format7zError as x:
return {"status": "failed", "url": url, "reason": f"7z member: {x}"}
return _finish(row, dest, data, url, "sevenzip_member")
# members of tar archives stored as gzip (the arXiv source bundles): the range is one gzip member
def fetch_gzip_member(row, dest, url, timeout, opener):
rng = _rng(row)
if rng is None or rng[1] is None:
raise Unsupported("a gzip member row needs a byte range")
raw = _get_range(url, timeout, rng[0], rng[1], opener)
limit = whole_cap_of(row)
parts, n, rest = [], 0, raw
while True: # a gzip file may hold several members; each is decompressed in turn
d = zlib.decompressobj(16 + zlib.MAX_WBITS)
try:
piece = d.decompress(rest, limit + 1 - n)
if not d.unconsumed_tail:
piece += d.flush()
except zlib.error as e:
return {"status": "failed", "url": url, "reason": f"cannot decompress the gzip member: {e}"}
n += len(piece)
if n > limit:
raise TooLarge(f"the member decompresses to more than the cap of {limit} bytes")
if not d.eof:
return {"status": "failed", "url": url, "reason": "the gzip member is incomplete"}
parts.append(piece)
rest = d.unused_data
if not rest:
break
last = parts[-1] # the gzip trailer (CRC32, length modulo 2^32) covers the last member only
want = row.get("payload_size_bytes")
if want is not None and len(last) % (1 << 32) != int(want):
return {"status": "failed", "url": url,
"reason": f"decompressed size differs: expected {want} (modulo 2^32), got {len(last)}"}
got = f"{zlib.crc32(last) & 0xFFFFFFFF:08x}"
tail = f"{struct.unpack('<I', raw[-8:-4])[0]:08x}"
want_crc = str((row.get("source_meta") or {}).get("crc32") or "").lower()
if got != tail or (want_crc and got != want_crc):
return {"status": "failed", "url": url,
"reason": f"CRC32 differs: computed {got}, gzip trailer {tail}, pointer {want_crc or '-'}"}
data = b"".join(parts)
hashes = row.get("hashes") or {}
h = Hasher(len(data))
h.update(data)
dg = h.digests()
for name in ("md5", "sha1", "sha256"):
w = str(hashes.get(name) or "").lower()
if w and dg[name] != w:
return {"status": "failed", "url": url, "reason": f"{name} differs: expected {w}, got {dg[name]}"}
_write(dest, data)
res = {"status": "ok", "path": str(dest), "bytes": len(data), "matched_on": "gzip_member", "crc32": got,
"url": url}
if not any(hashes.get(k) for k in ("md5", "sha1", "sha256")):
res["unverified"] = "checked against the gzip CRC32 and length; sha256 computed on download"
res["sha256"] = dg["sha256"]
return res
# requester-pays S3 (the requester's own AWS account pays; credentials come from the environment)
AWS_REGION = "us-east-1"
EMPTY_SHA256 = hashlib.sha256(b"").hexdigest()
def aws_credentials():
"""(access key, secret key, session token or None) from AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY and
AWS_SESSION_TOKEN, or None when they are not set. The script never stores or prints them."""
ak, sk = os.environ.get("AWS_ACCESS_KEY_ID"), os.environ.get("AWS_SECRET_ACCESS_KEY")
return (ak, sk, os.environ.get("AWS_SESSION_TOKEN") or None) if ak and sk else None
def _hmac(key: bytes, msg: str) -> bytes:
return hmac.new(key, msg.encode("utf-8"), hashlib.sha256).digest()
def sigv4_headers(method: str, url: str, headers: dict, access_key: str, secret_key: str, *,
region: str = AWS_REGION, service: str = "s3", now=None, payload_hash: str = EMPTY_SHA256) -> dict:
"""AWS Signature Version 4: -> the request headers plus host, x-amz-date, x-amz-content-sha256 and
Authorization. Every header given is signed; the path is encoded once, as S3 expects."""
u = urllib.parse.urlsplit(url)
now = now or datetime.datetime.now(datetime.timezone.utc)
amz_date = now.strftime("%Y%m%dT%H%M%SZ")
day = amz_date[:8]
h = {k.lower(): " ".join(str(v).split()) for k, v in headers.items()}
h["host"] = u.netloc
h["x-amz-date"] = amz_date
h["x-amz-content-sha256"] = payload_hash
names = sorted(h)
q = urllib.parse.parse_qsl(u.query, keep_blank_values=True)
enc = lambda s, keep: urllib.parse.quote(s, safe="/~" if keep else "~") # noqa: E731
canon_q = "&".join(f"{enc(k, False)}={enc(v, False)}" for k, v in sorted(q))
canon = "\n".join([method, enc(urllib.parse.unquote(u.path or "/"), True), canon_q,
"".join(f"{n}:{h[n]}\n" for n in names), ";".join(names), payload_hash])
scope = f"{day}/{region}/{service}/aws4_request"
to_sign = "\n".join(["AWS4-HMAC-SHA256", amz_date, scope, hashlib.sha256(canon.encode("utf-8")).hexdigest()])
k = _hmac(_hmac(_hmac(_hmac(("AWS4" + secret_key).encode("utf-8"), day), region), service), "aws4_request")
sig = hmac.new(k, to_sign.encode("utf-8"), hashlib.sha256).hexdigest()
out = {n: h[n] for n in names}
out["authorization"] = (f"AWS4-HMAC-SHA256 Credential={access_key}/{scope}, "
f"SignedHeaders={';'.join(names)}, Signature={sig}")
return out
def requester_pays_opener(opener, creds, region: str = AWS_REGION):
"""Wrap opener so that every request is signed and carries x-amz-request-payer: requester."""
ak, sk, token = creds
def op(url, timeout, rng=None, headers=None):
h = {"x-amz-request-payer": "requester", **(headers or {})}
if rng:
h["range"] = range_header(rng)
if token:
h["x-amz-security-token"] = token
return opener(url, timeout, rng, headers=sigv4_headers("GET", url, h, ak, sk, region=region))
return op
# single lichess games (public export API, one request at a time)
LICHESS_BASE = "https://lichess.org"
LICHESS_GAP = 1.0 # seconds between two requests
LICHESS_WAIT_429 = 60.0 # lichess asks clients to wait a full minute after HTTP 429
LICHESS_429_TRIES = 2
LICHESS_NOT_GAMES = {"training", "practice", "streamer", "tutorial", "analysis", "features", "insights",
"tutorials", "variants"}
LICHESS_GAME_RE = re.compile(r"^https?://(?:www\.)?lichess\.org/([A-Za-z0-9]{8})(?:[A-Za-z0-9]{4})?"
r"(?:/(?:white|black))?/?(?:#\d*)?$")
_LICHESS = {"last": None}
def lichess_game_id(row: dict):
"""The 8-character game id of a row that points to one lichess game: source_meta.game_id, or a game page
address (https://lichess.org/<id>, optionally with the 4 player characters, /white or /black, #ply)."""
sm = row.get("source_meta") if isinstance(row.get("source_meta"), dict) else {}
gid = sm.get("game_id")
if gid is None:
m = LICHESS_GAME_RE.match(str(row.get("uri") or ""))
gid = m.group(1) if m and m.group(1).lower() not in LICHESS_NOT_GAMES else None
return gid if isinstance(gid, str) and re.fullmatch(r"[A-Za-z0-9]{8}", gid) else None
def fetch_lichess_game(row, dest, url, timeout, opener, *, sleep=time.sleep):
limit = member_limit(row)
for attempt in range(LICHESS_429_TRIES + 1):
last = _LICHESS["last"]
if last is not None:
wait = LICHESS_GAP - (time.monotonic() - last)
if wait > 0:
sleep(wait)
try:
with opener(url, timeout, None, headers={"Accept": "application/x-chess-pgn"}) as src:
data = src.read(limit + 1)
except urllib.error.HTTPError as e:
if e.code == 429 and attempt < LICHESS_429_TRIES:
sleep(LICHESS_WAIT_429)
continue
raise
finally:
_LICHESS["last"] = time.monotonic()
break
_too_large_unknown(row, len(data), limit)
if not data.strip():
return {"status": "failed", "url": url, "reason": "the export returned no game"}
h = Hasher(len(data))
h.update(data)
why = verify(row, len(data), h.digests())
if why and (row.get("hashes") or row.get("size_bytes") is not None):
return {"status": "failed", "url": url, "reason": why}
_write(dest, data)
return no_hash_fields(row, {"status": "ok", "path": str(dest), "bytes": len(data),
"matched_on": "lichess_game_export", "url": url},
h.digests()["sha256"], "single-game export; sha256 computed on download")
# decompressing a fetched .gz, .bz2 or .zst file (--decompress)
DECOMPRESS = {".gz": "gzip", ".bz2": "bz2", ".zst": "zstd"}
def decompress_target(path: Path, row: dict):
"""(kind, output path) for a compressed file, or (None, None)."""
kind = DECOMPRESS.get(path.suffix.lower())
if kind:
return kind, path.with_suffix("")
kind = DECOMPRESS.get("." + str(row.get("ext") or "").lower().lstrip("."))
return (kind, path.with_name(path.name + ".decompressed")) if kind else (None, None)
def _decompressor(kind: str, f):
if kind == "gzip":
return gzip.GzipFile(fileobj=f)
if kind == "bz2":
return bz2.BZ2File(f)
try:
import zstandard
except ImportError:
raise Unsupported("decompressing .zst needs the zstandard package (pip install zstandard)") from None
return zstandard.ZstdDecompressor().stream_reader(f, read_across_frames=True)
def decompress_file(path: Path, row: dict, limit: int):
"""Stream-decompress a fetched file next to it (every gzip member, bz2 stream or zstd frame), at most limit
bytes. On success the compressed file is deleted; otherwise it is kept. -> manifest fields, or None when
the file is not compressed."""
kind, out = decompress_target(path, row)
if kind is None:
return None
part = out.with_name(out.name + ".part")
h = Hasher(None)
try:
with open(path, "rb") as f, _decompressor(kind, f) as src, open(part, "wb") as o:
while True:
b = src.read(CHUNK)
if not b:
break
h.update(b)
if h.n > limit:
break
o.write(b)
except Unsupported as e:
part.unlink(missing_ok=True)
return {"status": "unsupported", "reason": str(e)}
except Exception as e: # noqa: BLE001 (any decoder error: the compressed file stays)
part.unlink(missing_ok=True)
return {"status": "failed", "reason": f"cannot decompress ({kind}): {type(e).__name__}: {e}"}
if h.n > limit:
part.unlink(missing_ok=True)
return {"status": "too_large", "reason": f"decompressed size is more than the cap of {limit} bytes; "
"the compressed file is kept"}
os.replace(part, out)
path.unlink()
return {"status": "ok", "path": str(out), "bytes": h.n, "sha256": h.digests()["sha256"],
"compressed_path": str(path)}
def method_of(row: dict) -> str:
if lichess_game_id(row):
return "lichess_game"
if row.get("zip_entry") is not None:
return "zip_member"
scope = row.get("hash_scope") or "file"
if scope == "gzip_member":
return "gzip_member"
if row.get("member_path") is not None and not _rng(row):
kind = package_kind(row.get("uri"))
if kind:
return kind
path = urllib.parse.urlsplit(str(row.get("uri") or "")).path
return f"unsupported:member of {posixpath.basename(path) or 'an unknown container'}"
if scope == "http_payload":
return "warc_record"
if scope == "api_body":
return "api_body"
if scope != "file":
return f"unsupported:{scope}"
return "range" if _rng(row) else "file"
FETCHERS = {"file": fetch_file, "range": fetch_file, "warc_record": fetch_payload, "api_body": fetch_api_body,
"zip_member": fetch_member, "zip_package": fetch_zip_package, "tar_package": fetch_tar_package,
"sevenzip_member": fetch_sevenzip_member, "gzip_member": fetch_gzip_member,
"lichess_game": fetch_lichess_game}
def skip_reason(row: dict):
na = (row.get("access") or {}).get("needs_auth")
if na == "guestbook":
return "the dataset asks for a guestbook form before download; not filled in, no request sent"
if na == "restricted":
return "restricted file; access must be requested from the dataset authors, no request sent"
if na == "requester_pays" and aws_credentials() is None:
return ("requester-pays bucket: set AWS_ACCESS_KEY_ID and AWS_SECRET_ACCESS_KEY (your own AWS account pays "
"the request and transfer charges); no request sent")
return None
def fetch_one(row: dict, out: Path, *, timeout: float = 120, opener=open_url, retries: int = RETRIES,
backoff: float = BACKOFF, sleep=time.sleep) -> dict:
base = {"pointer_id": row.get("pointer_id")}
why = skip_reason(row)
if why:
return {**base, "status": "skipped", "reason": why}
method = method_of(row)
fn = FETCHERS.get(method)
size, cap = row.get("size_bytes"), cap_of(row)
if size is not None and int(size) > cap:
return {**base, "status": "too_large", "method": method,
"reason": f"size {int(size)} is more than the cap of {cap} bytes; not downloaded"}
if method == "lichess_game":
urls = [f"{LICHESS_BASE}/game/export/{lichess_game_id(row)}"]
fn = (lambda f: lambda *a: f(*a, sleep=sleep))(fn)
else:
urls = [u for u in candidates(row) if method in ("file", "api_body")
or u.startswith(("https://", "http://", "file://"))]
if fn is None or not urls:
return {**base, "status": "unsupported", "method": method,
"reason": "no supported address" if fn else f"fetch method {method}"}
if (row.get("access") or {}).get("needs_auth") == "requester_pays":
opener = requester_pays_opener(opener, aws_credentials(), (row.get("access") or {}).get("region") or AWS_REGION)
dest = dest_path(out, row)
dest.parent.mkdir(parents=True, exist_ok=True)
errors, n_retry = [], 0
for url in urls:
for k in range(retries + 1):
try:
res = fn(row, dest, url, timeout, opener)
except TooLarge as e:
return {**base, "status": "too_large", "method": method, "reason": str(e), "url": url,
**({"retries": n_retry} if n_retry else {})}
except Unsupported as e:
errors.append(f"{url}: {e}")
break
except Exception as e: # noqa: BLE001 (network errors: retry the transient ones, then the next address)
if transient(e) and k < retries:
n_retry += 1
sleep(backoff * 2 ** k)
continue
errors.append(f"{url}: {type(e).__name__}: {e}")
break
return {**base, "method": method, **res, **({"retries": n_retry} if n_retry else {})}
return {**base, "status": "failed", "method": method, "reason": "; ".join(errors) or "no address answered",
**({"retries": n_retry} if n_retry else {})}
# ---------- content check ----------
CONTENT_CHECKS = ("scanned_pdf", "error_page", "ext_mismatch")
CHECK_TIMEOUT = 60
CHECK_READ = 200_000
PDF_PAGES_READ = 5
PDF_MIN_CHARS_PER_PAGE = 20
ERROR_BODY_SHORT = 3000
ERROR_BODY_HEAD = 1500
ERROR_WORDS = re.compile(
r"\b(404|403|500|502|503)\b|not\s+found|page\s+cannot\s+be|cannot\s+be\s+(found|displayed)|\berror\b|"
r"access\s+denied|forbidden|object\s+moved|has\s+moved|moved\s+permanently|no\s+longer\s+(available|exists)|"
r"temporarily\s+unavailable|session\s+(has\s+)?expired|server\s+error|bad\s+request|invalid\s+(request|url)|"
r"unauthori[sz]ed|redirect", re.I)
TEXT_EXTS = frozenset({"html", "htm", "xhtml", "txt", "text", "xml", "csv", "log", "kml", "sql"})
_OLE = frozenset({"application/cdfv2", "application/vnd.ms-office", "application/x-ole-storage",
"application/cdfv2-unknown"})
_TXT = frozenset({"text/plain", "text/html", "text/xml"})
_OOXML = "application/vnd.openxmlformats-officedocument."
EXT_MIME = {
"pdf": {"application/pdf"},
"html": _TXT, "htm": _TXT, "xhtml": _TXT | {"application/xhtml+xml"},
"txt": _TXT | {"text/x-c", "text/x-c++", "text/x-fortran", "text/x-makefile", "text/x-shellscript", "text/x-tex",
"text/x-asm", "text/x-po", "text/x-java", "text/x-perl", "text/csv", "text/x-diff", "text/x-ruby",
"text/x-script.python", "text/rtf", "text/x-pascal", "text/troff", "text/x-lisp", "text/x-awk",
"text/x-msdos-batch", "application/csv", "application/json"},
"text": _TXT, "log": {"text/plain"},
"xml": _TXT | {"application/xml", "image/svg+xml"},
"kml": _TXT | {"application/xml", "application/vnd.google-earth.kml+xml"},
"csv": {"text/csv", "text/plain", "application/csv"},
"json": {"application/json", "text/plain"},
"sql": {"text/plain", "text/x-c", "text/x-c++"},
"jpg": {"image/jpeg"}, "jpeg": {"image/jpeg"}, "gif": {"image/gif"}, "png": {"image/png"},
"doc": {"application/msword"} | _OLE, "xls": {"application/vnd.ms-excel"} | _OLE,
"ppt": {"application/vnd.ms-powerpoint"} | _OLE, "pps": {"application/vnd.ms-powerpoint"} | _OLE,
"docx": {_OOXML + "wordprocessingml.document", "application/zip"},
"xlsx": {_OOXML + "spreadsheetml.sheet", "application/zip"},
"pptx": {_OOXML + "presentationml.presentation", "application/zip"},
"ps": {"application/postscript"}, "eps": {"application/postscript", "image/x-eps"},
"rtf": {"text/rtf"},
"zip": {"application/zip"}, "gz": {"application/gzip", "application/x-gzip"},
"swf": {"application/x-shockwave-flash"},
}
def run_tool(cmd: list, timeout: float = CHECK_TIMEOUT):
"""Run a system tool; returns (returncode, stdout) or None when the tool is not installed."""
if shutil.which(cmd[0]) is None:
return None
try:
r = subprocess.run(cmd, capture_output=True, timeout=timeout, check=False)
except subprocess.TimeoutExpired:
return -9, ""
except OSError:
return None
return r.returncode, r.stdout.decode("utf-8", "replace")
def _text_of(data: bytes):
s = data.decode("latin-1")
m = re.search(r"<title[^>]*>(.*?)</title>", s, re.I | re.S)
title = re.sub(r"\s+", " ", m.group(1)).strip() if m else ""
body = re.sub(r"(?is)<(script|style)[^>]*>.*?</\1>", " ", s)
body = re.sub(r"(?s)<[^>]+>", " ", body)
body = re.sub(r"&nbsp;|&#160;", " ", body)
return title, re.sub(r"\s+", " ", body).strip()
def _scanned_pdf(path: Path):
"""(result, detail, skip reason) for one PDF."""
fonts = run_tool(["pdffonts", str(path)])
if fonts is None:
return "skipped", {}, "pdffonts not installed (poppler-utils)"
if fonts[0] != 0:
return "skipped", {}, "pdffonts could not read the file"
text = run_tool(["pdftotext", "-l", str(PDF_PAGES_READ), "-q", str(path), "-"])
if text is None:
return "skipped", {}, "pdftotext not installed (poppler-utils)"
if text[0] != 0:
return "skipped", {}, "pdftotext could not read the file"
n_fonts = max(0, len(fonts[1].strip().splitlines()) - 2)
pages = max(1, min(PDF_PAGES_READ, text[1].count("\f")))
chars = len(re.sub(r"\s", "", text[1]))
detail = {"pdf_fonts": n_fonts, "pdf_text_chars": chars, "pdf_pages_read": pages}
flagged = n_fonts == 0 and chars < PDF_MIN_CHARS_PER_PAGE * pages
return ("flagged" if flagged else "clean"), detail, None
def check_content(path: Path, ext: str | None = None) -> dict:
"""The three content checks for one downloaded file (see the module docstring)."""
path = Path(path)
ext = (ext or path.suffix).lower().lstrip(".")
out: dict = {}
skipped: dict = {}
with open(path, "rb") as f:
head = f.read(CHECK_READ)
m = run_tool(["file", "-b", "--mime-type", str(path)])
mime = m[1].strip().lower() if m and m[0] == 0 and m[1].strip() else None
if mime:
out["mime"] = mime
is_pdf = mime == "application/pdf" if mime else head[:1024].lstrip().startswith(b"%PDF-")
if is_pdf:
res, detail, why = _scanned_pdf(path)
out["scanned_pdf"] = res
out.update(detail)
if why:
skipped["scanned_pdf"] = why
else:
out["scanned_pdf"] = "not_applicable"
if ext in TEXT_EXTS or mime in ("text/html", "text/xml", "application/xhtml+xml"):
title, body = _text_of(head)
hit = bool(ERROR_WORDS.search(title)) or (
len(body) < ERROR_BODY_SHORT and bool(ERROR_WORDS.search(body[:ERROR_BODY_HEAD])))
out["error_page"] = "flagged" if hit else "clean"
if hit:
out["error_hint"] = (title + " | " + body[:200])[:300]
else:
out["error_page"] = "not_applicable"
allowed = EXT_MIME.get(ext)
if allowed is None:
out["ext_mismatch"] = "not_applicable"
elif path.stat().st_size == 0:
out["ext_mismatch"] = "not_applicable"
out["empty"] = True
elif mime is None:
out["ext_mismatch"] = "skipped"
skipped["ext_mismatch"] = "file not installed" if m is None else "file could not read the file"
else:
out["ext_mismatch"] = "clean" if mime in allowed else "flagged"
out["flags"] = [c for c in CONTENT_CHECKS if out[c] == "flagged"]
if skipped:
out["skipped"] = skipped
return out
# ---------- command line ----------
def _key(row: dict) -> dict:
rng = row.get("range") if isinstance(row.get("range"), dict) else {}
return {"source": row.get("source"), "uri": row.get("uri"), "range_offset": rng.get("offset"),
"member_path": row.get("member_path")}
def selected_rows(con, sql: str, specs: dict):
cur = con.execute(sql)
names = [d[0] for d in cur.description]
while True:
batch = cur.fetchmany(1000)
if not batch:
break
for t in batch:
col = dict(zip(names, t))
spec = specs.get(col["source"])
if spec is None:
yield {**_key({"source": col["source"], "uri": col["uri"], "member_path": col.get("member_path")}),
"status": "unsupported", "reason": "source missing from meta/sources.json"}, None
continue
row = restore(col, spec)
row["_size_cap"] = col.get("size_cap_bytes")
row["_batch_cap"] = col.get("batch_cap_bytes")
row["_nk_conflict"] = bool(col.get("natural_key_conflict"))
yield None, row
def parse_args(argv=None):
ap = argparse.ArgumentParser(description=__doc__.split("\n\n")[0], formatter_class=argparse.RawTextHelpFormatter)
ap.add_argument("--repo", default=DEFAULT_REPO, help=f"dataset repository (default {DEFAULT_REPO})")
ap.add_argument("--data", help="read the tables from this local copy or URL prefix instead of the repository")
ap.add_argument("--tag", action="append", help="use tag (repeatable; see meta/tags.parquet)")
ap.add_argument("--ext", action="append", help="file extension without the dot (repeatable)")
ap.add_argument("--source", action="append", help="source name (repeatable)")
ap.add_argument("--tier", type=lambda s: [x for x in s.split(",") if x],
help="training license tiers, comma separated (default: all tiers)")
ap.add_argument("--min-size", type=int, help="smallest size in bytes")
ap.add_argument("--cap", choices=CAP_MODES, default="overall",
help="size cap used when fetching (default overall: the 99th percentile of all benchmark task\n"
"files; per-class: the cap of the row's content class, see meta/size_caps.json)")
ap.add_argument("--max-size", type=int,
help="size cap in bytes used when fetching, for every row (replaces --cap); it does not\n"
"remove rows from the selection")
ap.add_argument("--where", help="extra SQL condition on the row table p (and the batch table b)")
ap.add_argument("--limit", type=int, help="at most this many rows (spread over the selection in a fixed order)")
ap.add_argument("--starter", help="read starter/<tag>.parquet instead of the full tables")
ap.add_argument("--no-default-filter", action="store_true", help="apply only the conditions given here")
ap.add_argument("--out", default="fetched", help="directory for the files and the manifest (default ./fetched)")
ap.add_argument("--dry-run", action="store_true", help="write the manifest of selected rows, download nothing")
ap.add_argument("--print-sql", action="store_true", help="print the query and exit")
ap.add_argument("--memory-limit", help="DuckDB memory limit, for example 4GB")
ap.add_argument("--temp-dir", help="DuckDB spill directory")
ap.add_argument("--decompress", action="store_true",
help="after a verified download, decompress .gz, .bz2 and .zst files (within the row's cap)\n"
"and delete the compressed file; .zst needs pip install zstandard")
ap.add_argument("--check-content", action="store_true",
help="after a verified download, flag scanned PDFs, error pages saved as files and extensions\n"
"that do not match the content (manifest field content_check); needs the file command\n"
"and poppler-utils (pdffonts, pdftotext), a missing tool skips its check")
ap.add_argument("--timeout", type=float, default=120)
a = ap.parse_args(argv)
for t in a.tier or ():
if t not in TIERS:
ap.error(f"unknown tier {t}; use {', '.join(TIERS)}")
return a
def main(argv=None, *, opener=open_url, sleep=time.sleep) -> int:
args = parse_args(argv)
root = _root(args)
conds = build_where(tags=args.tag or (), exts=args.ext or (), sources=args.source or (), tiers=args.tier,
min_size=args.min_size, where=args.where,
default=not args.no_default_filter)
if args.print_sql:
print(";\n".join(views_sql(root, sources=args.source or (), starter=args.starter)) + ";")
print(select_sql(conds, args.limit, args.max_size, args.cap) + ";")
return 0
root = pin_root(root, revision=lambda repo: repo_revision(repo, opener=opener))
con = connect(args.memory_limit, args.temp_dir, remote=is_remote(root))
for s in views_sql(root, sources=args.source or (), starter=args.starter):
con.execute(s)
specs = load_specs(con, root)
out = Path(args.out)
out.mkdir(parents=True, exist_ok=True)
counts: dict = {}
try:
with open(out / MANIFEST, "w", encoding="utf-8") as man:
for early, row in selected_rows(con, select_sql(conds, args.limit, args.max_size, args.cap), specs):
if early is not None:
res = early
elif args.dry_run:
res = {**_key(row), "pointer_id": row.get("pointer_id"), "status": "selected",
"method": method_of(row), "size_bytes": row.get("size_bytes"),
"size_cap_bytes": row.get("_size_cap")}
else:
res = {**_key(row), **fetch_one(row, out, timeout=args.timeout, opener=opener, sleep=sleep)}
if args.decompress and res.get("status") == "ok" and res.get("path"):
d = decompress_file(Path(res["path"]), row, cap_of(row))
if d is not None:
res["decompress"] = d
if d["status"] == "ok":
res["path"] = d["path"]
if args.check_content and res.get("status") == "ok" and res.get("path"):
p = Path(res["path"])
ext = None if res.get("decompress", {}).get("status") == "ok" else row.get("ext")
try:
res["content_check"] = check_content(p, ext)
except OSError as e:
res["content_check"] = {"skipped": {"all": f"could not read the file: {e}"}}
if row is not None and row.get("size_bytes") is None:
res["size_unknown"] = True
if row is not None and row.get("_nk_conflict"):
res["natural_key_conflict"] = True
counts[res["status"]] = counts.get(res["status"], 0) + 1
man.write(json.dumps(res, ensure_ascii=False, sort_keys=True) + "\n")
finally:
clear_package_cache()
print(json.dumps({"manifest": str(out / MANIFEST), "counts": counts}, sort_keys=True))
return 0 if not counts.get("failed") else 1
if __name__ == "__main__":
sys.exit(main())