Remove the May 2026 loose upload from main (69 GSE folders, test/); release unchanged

These loose files were uploaded before the first versioned release and are not in any release catalog. releases/2026-09-17 is unchanged; the files stay reachable under the existing tags.

CHANGELOG.md

@@ -1,5 +1,11 @@
 # Release notes
 
+## Repository cleanup, 2026-11-11 (no new release tag)
+
+- Removed an older upload from `main`: 69 top-level folders named by GEO series (`GSE...`) from May 2026 (4,130 loose files, about 185 GB) and the `test/` folder. These loose files were uploaded before the first versioned release and are not listed in any release catalog.
+- The release under `releases/2026-09-17/` did not change. Tag `2026-09-17-v1.6` still names the current release: 4,682 samples from 530 studies. If you download packages through the catalog, nothing changes for you.
+- The removed files stay reachable under all existing tags (`2026-09-17-v1` to `2026-09-17-v1.6`).
+
 ## 2026-09-17-v1.6 — nine misaligned samples withdrawn, 2026-11-11
 
 - Withdrew 9 packages from 5 studies because their spots do not sit on the tissue in the image: `GSM7156292` to `GSM7156295` (GSE229175), `GSM9097318` and `GSM9097320` (GSE302160), `GSM8925216` (GSE294844), `GSM8770960` (GSE288607) and `GSM9317397` (GSE311123). Their expression values and coordinates are equal to the GEO deposit; only the match between spots and image is wrong.

GSE196882/.sentinel_report.json

@@ -1,416 +0,0 @@
-{
-  "gse_id": "GSE196882",
-  "scan_time": "2026-04-14T20:54:13",
-  "assets": [
-    {
-      "path": "GSE196882_Images_capture_area/Images_capture_area/raw_capture_area_images/XGE21_A1.tif",
-      "type": "File",
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-      "status": "OK",
-      "category": "Image",
-      "shape": [
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-      "dtype": "uint8",
-      "is_ome": false,
-      "channels": 3,
-      "mode": "RGB"
-    },
-    {
-      "path": "GSE196882_RAW/GSM5903598_XGE20_UL04/XGE20_UL04/XGE20_UL04_cloupe.cloupe",
-      "type": "File",
-      "file_size_mb": 434.09,
-      "status": "OK",
-      "category": "Large_Blob"
-    },
-    {
-      "path": "GSE196882_Images_capture_area/Images_capture_area/raw_capture_area_images/XGE20_A1.tif",
-      "type": "File",
-      "file_size_mb": 371.32,
-      "status": "OK",
-      "category": "Image",
-      "shape": [
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-        15291,
-        3
-      ],
-      "dtype": "uint8",
-      "is_ome": false,
-      "channels": 3,
-      "mode": "RGB"
-    },
-    {
-      "path": "GSE196882_RAW/GSM5903596_XGE20_UL01/XGE20_UL01/tissue_hires_image.png",
-      "type": "File",
-      "file_size_mb": 4.44,
-      "status": "OK",
-      "category": "Image",
-      "shape": [
-        2000,
-        1952
-      ],
-      "mode": "RGB",
-      "channels": 3
-    },
-    {
-      "path": "GSE196882_XGE22_image/Images/075_GE_A1_DQ01.TIF",
-      "type": "File",
-      "file_size_mb": 337.02,
-      "status": "OK",
-      "category": "Image",
-      "shape": [
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-        14054,
-        3
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-      "is_ome": true,
-      "channels": 3,
-      "mode": "RGB"
-    },
-    {
-      "path": "GSE196882_Images_capture_area/Images_capture_area/raw_capture_area_images/XGE20_C1.tif",
-      "type": "File",
-      "file_size_mb": 374.79,
-      "status": "OK",
-      "category": "Image",
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-        3
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-      "is_ome": false,
-      "channels": 3,
-      "mode": "RGB"
-    },
-    {
-      "path": "GSE196882_RAW/GSM5903593_XGE21_VR03/XGE21_VR03/XGE21_VR03cloupe.cloupe",
-      "type": "File",
-      "file_size_mb": 246.7,
-      "status": "OK",
-      "category": "Large_Blob"
-    },
-    {
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-      "type": "File",
-      "file_size_mb": 5.84,
-      "status": "OK",
-      "category": "Image",
-      "shape": [
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-      "channels": 3
-    },
-    {
-      "path": "GSE196882_Layout_of_datasets.png.gz",
-      "type": "File",
-      "file_size_mb": 1.68,
-      "status": "OK",
-      "category": "Image",
-      "shape": [
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-        1174
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-      "mode": "RGBA",
-      "channels": 4,
-      "is_compressed": true
-    },
-    {
-      "path": "GSE196882_XGE22_image/Images/096_GE_A1_DQ05.TIF",
-      "type": "File",
-      "file_size_mb": 345.17,
-      "status": "OK",
-      "category": "Image",
-      "shape": [
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-      "dtype": "uint8",
-      "is_ome": true,
-      "channels": 3,
-      "mode": "RGB"
-    },
-    {
-      "path": "GSE196882_XGE22_image/Images/096_GE_D1_DQ08.TIF",
-      "type": "File",
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-      "status": "OK",
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-    },
-    {
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-      "type": "File",
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-      "status": "OK",
-      "category": "Image",
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-    {
-      "path": "GSE196882_RAW/GSM5903594_XGE21_VR02/XGE21_VR02/XGE21_VR02_cloupe.cloupe",
-      "type": "File",
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-      "status": "OK",
-      "category": "Large_Blob"
-    },
-    {
-      "path": "GSE196882_Images_capture_area/Images_capture_area/raw_capture_area_images/XGE21_B1.tif",
-      "type": "File",
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-      "status": "OK",
-      "category": "Image",
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-      "is_ome": false,
-      "channels": 3,
-      "mode": "RGB"
-    },
-    {
-      "path": "GSE196882_XGE22_image/Images/075_GE_C1_DQ03.TIF",
-      "type": "File",
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-      "status": "OK",
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-      "status": "OK",
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-    },
-    {
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-      "status": "OK",
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-    },
-    {
-      "path": "GSE196882_RAW/GSM5903593_XGE21_VR03/XGE21_VR03/tissue_hires_image.png",
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-      "status": "OK",
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-      "type": "File",
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-      "status": "OK",
-      "category": "Large_Blob"
-    },
-    {
-      "path": "GSE196882_RAW/GSM5903597_XGE20_UL02/XGE20_UL02/XGE20_UL02_cloupe.cloupe",
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-      "status": "OK",
-      "category": "Large_Blob"
-    },
-    {
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-    {
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-    }
-  ]
-}

GSE196882/GSM5903592/.standardization_success

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