Submit central-storage portal smoke test
#2
by danieltslz - opened
- incoming/hf_portal_central_smoke_20260728_v1/README.md +16 -0
- incoming/hf_portal_central_smoke_20260728_v1/embeddings.npz +3 -0
- incoming/hf_portal_central_smoke_20260728_v1/genes.tsv +1501 -0
- incoming/hf_portal_central_smoke_20260728_v1/metadata.json +19 -0
- incoming/hf_portal_central_smoke_20260728_v1/submission.yaml +35 -0
incoming/hf_portal_central_smoke_20260728_v1/README.md
ADDED
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# HF Portal Central Storage Smoke Test
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Embedding ID: `hf_portal_central_smoke_20260728_v1`
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This package contains deterministic synthetic vectors created solely
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to verify the direct Hugging Face Pull Request submission pipeline.
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It contains 1,500 human Ensembl gene IDs and eight-dimensional
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float32 vectors. It makes no biological or scientific claims.
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The submitted modality is `Spatial Omics`, which is intentionally
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outside the official catalog taxonomy. The expected displayed
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category is therefore `Other`.
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After the portal implementation is approved, this synthetic package
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can be removed from the staging library.
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incoming/hf_portal_central_smoke_20260728_v1/embeddings.npz
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:ce19349f7940480d919da1477c5881cf8472d073ab22cd9f971219e7b393b02f
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size 39203
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incoming/hf_portal_central_smoke_20260728_v1/genes.tsv
ADDED
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@@ -0,0 +1,1501 @@
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| 1 |
+
ensembl_gene_id
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| 2 |
+
ENSG00000000003
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| 3 |
+
ENSG00000000005
|
| 4 |
+
ENSG00000000419
|
| 5 |
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ENSG00000000457
|
| 6 |
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ENSG00000000460
|
| 7 |
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ENSG00000000938
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| 8 |
+
ENSG00000000971
|
| 9 |
+
ENSG00000001036
|
| 10 |
+
ENSG00000001084
|
| 11 |
+
ENSG00000001167
|
| 12 |
+
ENSG00000001460
|
| 13 |
+
ENSG00000001461
|
| 14 |
+
ENSG00000001497
|
| 15 |
+
ENSG00000001561
|
| 16 |
+
ENSG00000001617
|
| 17 |
+
ENSG00000001626
|
| 18 |
+
ENSG00000001629
|
| 19 |
+
ENSG00000001630
|
| 20 |
+
ENSG00000001631
|
| 21 |
+
ENSG00000002016
|
| 22 |
+
ENSG00000002330
|
| 23 |
+
ENSG00000002549
|
| 24 |
+
ENSG00000002586
|
| 25 |
+
ENSG00000002587
|
| 26 |
+
ENSG00000002726
|
| 27 |
+
ENSG00000002745
|
| 28 |
+
ENSG00000002746
|
| 29 |
+
ENSG00000002822
|
| 30 |
+
ENSG00000002834
|
| 31 |
+
ENSG00000002919
|
| 32 |
+
ENSG00000002933
|
| 33 |
+
ENSG00000003056
|
| 34 |
+
ENSG00000003096
|
| 35 |
+
ENSG00000003137
|
| 36 |
+
ENSG00000003147
|
| 37 |
+
ENSG00000003249
|
| 38 |
+
ENSG00000003393
|
| 39 |
+
ENSG00000003400
|
| 40 |
+
ENSG00000003402
|
| 41 |
+
ENSG00000003436
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| 42 |
+
ENSG00000003509
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| 43 |
+
ENSG00000003756
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| 44 |
+
ENSG00000003987
|
| 45 |
+
ENSG00000003989
|
| 46 |
+
ENSG00000004059
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| 47 |
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ENSG00000004139
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| 48 |
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ENSG00000004142
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| 49 |
+
ENSG00000004399
|
| 50 |
+
ENSG00000004455
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| 51 |
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ENSG00000004468
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| 52 |
+
ENSG00000004478
|
| 53 |
+
ENSG00000004487
|
| 54 |
+
ENSG00000004534
|
| 55 |
+
ENSG00000004660
|
| 56 |
+
ENSG00000004700
|
| 57 |
+
ENSG00000004766
|
| 58 |
+
ENSG00000004776
|
| 59 |
+
ENSG00000004777
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| 60 |
+
ENSG00000004779
|
| 61 |
+
ENSG00000004799
|
| 62 |
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ENSG00000004809
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| 63 |
+
ENSG00000004838
|
| 64 |
+
ENSG00000004846
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| 65 |
+
ENSG00000004848
|
| 66 |
+
ENSG00000004864
|
| 67 |
+
ENSG00000004866
|
| 68 |
+
ENSG00000004897
|
| 69 |
+
ENSG00000004939
|
| 70 |
+
ENSG00000004948
|
| 71 |
+
ENSG00000004961
|
| 72 |
+
ENSG00000004975
|
| 73 |
+
ENSG00000005001
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| 74 |
+
ENSG00000005007
|
| 75 |
+
ENSG00000005020
|
| 76 |
+
ENSG00000005022
|
| 77 |
+
ENSG00000005059
|
| 78 |
+
ENSG00000005073
|
| 79 |
+
ENSG00000005075
|
| 80 |
+
ENSG00000005100
|
| 81 |
+
ENSG00000005102
|
| 82 |
+
ENSG00000005108
|
| 83 |
+
ENSG00000005156
|
| 84 |
+
ENSG00000005175
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| 85 |
+
ENSG00000005187
|
| 86 |
+
ENSG00000005189
|
| 87 |
+
ENSG00000005194
|
| 88 |
+
ENSG00000005206
|
| 89 |
+
ENSG00000005238
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| 90 |
+
ENSG00000005243
|
| 91 |
+
ENSG00000005249
|
| 92 |
+
ENSG00000005302
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| 93 |
+
ENSG00000005339
|
| 94 |
+
ENSG00000005379
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| 95 |
+
ENSG00000005381
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| 96 |
+
ENSG00000005421
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| 97 |
+
ENSG00000005436
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| 98 |
+
ENSG00000005448
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| 99 |
+
ENSG00000005469
|
| 100 |
+
ENSG00000005471
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| 101 |
+
ENSG00000005483
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| 102 |
+
ENSG00000005486
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| 103 |
+
ENSG00000005513
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| 104 |
+
ENSG00000005700
|
| 105 |
+
ENSG00000005801
|
| 106 |
+
ENSG00000005810
|
| 107 |
+
ENSG00000005812
|
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|
| 1409 |
+
ENSG00000078237
|
| 1410 |
+
ENSG00000078246
|
| 1411 |
+
ENSG00000078269
|
| 1412 |
+
ENSG00000078295
|
| 1413 |
+
ENSG00000078304
|
| 1414 |
+
ENSG00000078328
|
| 1415 |
+
ENSG00000078369
|
| 1416 |
+
ENSG00000078399
|
| 1417 |
+
ENSG00000078401
|
| 1418 |
+
ENSG00000078403
|
| 1419 |
+
ENSG00000078487
|
| 1420 |
+
ENSG00000078549
|
| 1421 |
+
ENSG00000078579
|
| 1422 |
+
ENSG00000078589
|
| 1423 |
+
ENSG00000078596
|
| 1424 |
+
ENSG00000078618
|
| 1425 |
+
ENSG00000078668
|
| 1426 |
+
ENSG00000078674
|
| 1427 |
+
ENSG00000078687
|
| 1428 |
+
ENSG00000078699
|
| 1429 |
+
ENSG00000078725
|
| 1430 |
+
ENSG00000078747
|
| 1431 |
+
ENSG00000078795
|
| 1432 |
+
ENSG00000078804
|
| 1433 |
+
ENSG00000078808
|
| 1434 |
+
ENSG00000078814
|
| 1435 |
+
ENSG00000078898
|
| 1436 |
+
ENSG00000078900
|
| 1437 |
+
ENSG00000078902
|
| 1438 |
+
ENSG00000078967
|
| 1439 |
+
ENSG00000079101
|
| 1440 |
+
ENSG00000079102
|
| 1441 |
+
ENSG00000079112
|
| 1442 |
+
ENSG00000079134
|
| 1443 |
+
ENSG00000079150
|
| 1444 |
+
ENSG00000079156
|
| 1445 |
+
ENSG00000079215
|
| 1446 |
+
ENSG00000079246
|
| 1447 |
+
ENSG00000079257
|
| 1448 |
+
ENSG00000079263
|
| 1449 |
+
ENSG00000079277
|
| 1450 |
+
ENSG00000079308
|
| 1451 |
+
ENSG00000079313
|
| 1452 |
+
ENSG00000079332
|
| 1453 |
+
ENSG00000079335
|
| 1454 |
+
ENSG00000079337
|
| 1455 |
+
ENSG00000079385
|
| 1456 |
+
ENSG00000079387
|
| 1457 |
+
ENSG00000079393
|
| 1458 |
+
ENSG00000079432
|
| 1459 |
+
ENSG00000079435
|
| 1460 |
+
ENSG00000079459
|
| 1461 |
+
ENSG00000079462
|
| 1462 |
+
ENSG00000079482
|
| 1463 |
+
ENSG00000079557
|
| 1464 |
+
ENSG00000079616
|
| 1465 |
+
ENSG00000079689
|
| 1466 |
+
ENSG00000079691
|
| 1467 |
+
ENSG00000079739
|
| 1468 |
+
ENSG00000079785
|
| 1469 |
+
ENSG00000079805
|
| 1470 |
+
ENSG00000079819
|
| 1471 |
+
ENSG00000079841
|
| 1472 |
+
ENSG00000079931
|
| 1473 |
+
ENSG00000079950
|
| 1474 |
+
ENSG00000079974
|
| 1475 |
+
ENSG00000079999
|
| 1476 |
+
ENSG00000080007
|
| 1477 |
+
ENSG00000080031
|
| 1478 |
+
ENSG00000080166
|
| 1479 |
+
ENSG00000080189
|
| 1480 |
+
ENSG00000080200
|
| 1481 |
+
ENSG00000080224
|
| 1482 |
+
ENSG00000080293
|
| 1483 |
+
ENSG00000080298
|
| 1484 |
+
ENSG00000080345
|
| 1485 |
+
ENSG00000080371
|
| 1486 |
+
ENSG00000080493
|
| 1487 |
+
ENSG00000080503
|
| 1488 |
+
ENSG00000080511
|
| 1489 |
+
ENSG00000080546
|
| 1490 |
+
ENSG00000080561
|
| 1491 |
+
ENSG00000080572
|
| 1492 |
+
ENSG00000080573
|
| 1493 |
+
ENSG00000080603
|
| 1494 |
+
ENSG00000080608
|
| 1495 |
+
ENSG00000080618
|
| 1496 |
+
ENSG00000080644
|
| 1497 |
+
ENSG00000080709
|
| 1498 |
+
ENSG00000080802
|
| 1499 |
+
ENSG00000080815
|
| 1500 |
+
ENSG00000080819
|
| 1501 |
+
ENSG00000080822
|
incoming/hf_portal_central_smoke_20260728_v1/metadata.json
ADDED
|
@@ -0,0 +1,19 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"embedding_id": "hf_portal_central_smoke_20260728_v1",
|
| 3 |
+
"display_name": "HF Portal Central Storage Smoke Test",
|
| 4 |
+
"species": "Homo sapiens",
|
| 5 |
+
"broad_modality": "Spatial Omics",
|
| 6 |
+
"detailed_modality": "synthetic direct-upload portal test",
|
| 7 |
+
"original_method": "deterministic analytical fixture",
|
| 8 |
+
"model_checkpoint": "not-applicable",
|
| 9 |
+
"embedding_generated_by": "Gene Embeddings portal smoke-test generator",
|
| 10 |
+
"input_data_source": "synthetic deterministic values",
|
| 11 |
+
"input_data_release": "2026-07-28",
|
| 12 |
+
"pooling_strategy": "not-applicable",
|
| 13 |
+
"original_identifier_type": "Ensembl gene ID",
|
| 14 |
+
"mapping_method": "direct use of the first 1500 identifiers from the project master gene universe",
|
| 15 |
+
"source_license": "cc0-1.0",
|
| 16 |
+
"redistribution_allowed": true,
|
| 17 |
+
"source_url": "",
|
| 18 |
+
"publication": ""
|
| 19 |
+
}
|
incoming/hf_portal_central_smoke_20260728_v1/submission.yaml
ADDED
|
@@ -0,0 +1,35 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
schema_version: 1
|
| 2 |
+
embedding_id: hf_portal_central_smoke_20260728_v1
|
| 3 |
+
display_name: HF Portal Central Storage Smoke Test
|
| 4 |
+
contributor:
|
| 5 |
+
name: Daniel Tabares
|
| 6 |
+
affiliation: ETH Zürich
|
| 7 |
+
scientific:
|
| 8 |
+
broad_modality: Spatial Omics
|
| 9 |
+
detailed_modality: synthetic direct-upload portal test
|
| 10 |
+
original_method: deterministic analytical fixture
|
| 11 |
+
model_checkpoint: not-applicable
|
| 12 |
+
source_publication: ''
|
| 13 |
+
description: Deterministic synthetic gene vectors created solely to verify Hugging
|
| 14 |
+
Face Pull Request validation, central Dataset storage, registry publication, category
|
| 15 |
+
fallback, and static Space synchronization.
|
| 16 |
+
provenance:
|
| 17 |
+
embedding_generated_by: Gene Embeddings portal smoke-test generator
|
| 18 |
+
input_data_source: synthetic deterministic values
|
| 19 |
+
input_data_release: '2026-07-28'
|
| 20 |
+
species: Homo sapiens
|
| 21 |
+
pooling_strategy: not-applicable
|
| 22 |
+
identifier_before_mapping: Ensembl gene ID
|
| 23 |
+
mapping_method: direct use of the first 1500 identifiers from the project master
|
| 24 |
+
gene universe
|
| 25 |
+
licensing:
|
| 26 |
+
source_license: cc0-1.0
|
| 27 |
+
redistribution_allowed: true
|
| 28 |
+
terms_url: https://creativecommons.org/publicdomain/zero/1.0/
|
| 29 |
+
attestations:
|
| 30 |
+
information_is_accurate: true
|
| 31 |
+
rights_to_redistribute: true
|
| 32 |
+
no_sensitive_human_data: true
|
| 33 |
+
no_patient_level_data: true
|
| 34 |
+
source_terms_reviewed: true
|
| 35 |
+
acceptance_of_automatic_checks: true
|