BoghdadyJR/codesearch_python · Datasets at Hugging Face

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def setSpeciesFromJson(self, speciesJson): """ Sets the species, an OntologyTerm, to the specified value, given as a JSON string. See the documentation for details of this field. """ try: parsed = protocol.fromJson(speciesJson, protocol.OntologyTerm) ...
def getReferenceByName(self, name): """ Returns the reference with the specified name. """ if name not in self._referenceNameMap: raise exceptions.ReferenceNameNotFoundException(name) return self._referenceNameMap[name]
def getReference(self, id_): """ Returns the Reference with the specified ID or raises a ReferenceNotFoundException if it does not exist. """ if id_ not in self._referenceIdMap: raise exceptions.ReferenceNotFoundException(id_) return self._referenceIdMap[id_]
def getMd5Checksum(self): """ Returns the MD5 checksum for this reference set. This checksum is calculated by making a list of `Reference.md5checksum` for all `Reference`s in this set. We then sort this list, and take the MD5 hash of all the strings concatenated together. ...
def toProtocolElement(self): """ Returns the GA4GH protocol representation of this ReferenceSet. """ ret = protocol.ReferenceSet() ret.assembly_id = pb.string(self.getAssemblyId()) ret.description = pb.string(self.getDescription()) ret.id = self.getId() re...
def toProtocolElement(self): """ Returns the GA4GH protocol representation of this Reference. """ reference = protocol.Reference() reference.id = self.getId() reference.is_derived = self.getIsDerived() reference.length = self.getLength() reference.md5check...
def checkQueryRange(self, start, end): """ Checks to ensure that the query range is valid within this reference. If not, raise ReferenceRangeErrorException. """ condition = ( (start < 0 or end > self.getLength()) or start > end or start == end) if ...
def populateFromFile(self, dataUrl): """ Populates the instance variables of this ReferencSet from the data URL. """ self._dataUrl = dataUrl fastaFile = self.getFastaFile() for referenceName in fastaFile.references: reference = HtslibReference(self, re...
def populateFromRow(self, referenceSetRecord): """ Populates this reference set from the values in the specified DB row. """ self._dataUrl = referenceSetRecord.dataurl self._description = referenceSetRecord.description self._assemblyId = referenceSetRecord.assembl...
def populateFromRow(self, referenceRecord): """ Populates this reference from the values in the specified DB row. """ self._length = referenceRecord.length self._isDerived = bool(referenceRecord.isderived) self._md5checksum = referenceRecord.md5checksum species = ...
def _extractAssociationsDetails(self, associations): """ Given a set of results from our search query, return the `details` (feature,environment,phenotype) """ detailedURIRef = [] for row in associations.bindings: if 'feature' in row: detailedU...
def _detailTuples(self, uriRefs): """ Given a list of uriRefs, return a list of dicts: {'subject': s, 'predicate': p, 'object': o } all values are strings """ details = [] for uriRef in uriRefs: for subject, predicate, object_ in self._rdfGraph.triples...
def _bindingsToDict(self, bindings): """ Given a binding from the sparql query result, create a dict of plain text """ myDict = {} for key, val in bindings.iteritems(): myDict[key.toPython().replace('?', '')] = val.toPython() return myDict
def _addDataFile(self, filename): """ Given a filename, add it to the graph """ if filename.endswith('.ttl'): self._rdfGraph.parse(filename, format='n3') else: self._rdfGraph.parse(filename, format='xml')
def _getDetails(self, uriRef, associations_details): """ Given a uriRef, return a dict of all the details for that Ref use the uriRef as the 'id' of the dict """ associationDetail = {} for detail in associations_details: if detail['subject'] == uriRef: ...
def _formatExternalIdentifiers(self, element, element_type): """ Formats several external identifiers for query """ elementClause = None elements = [] if not issubclass(element.__class__, dict): element = protocol.toJsonDict(element) if element['extern...
def _formatExternalIdentifier(self, element, element_type): """ Formats a single external identifier for query """ if "http" not in element['database']: term = "{}:{}".format(element['database'], element['identifier']) namespaceTerm = self._toNamespaceURL(term) ...
def _formatOntologyTerm(self, element, element_type): """ Formats the ontology terms for query """ elementClause = None if isinstance(element, dict) and element.get('terms'): elements = [] for _term in element['terms']: if _term.get('id'): ...
def _formatOntologyTermObject(self, terms, element_type): """ Formats the ontology term object for query """ elementClause = None if not isinstance(terms, collections.Iterable): terms = [terms] elements = [] for term in terms: if term.term_...
def _formatIds(self, element, element_type): """ Formats a set of identifiers for query """ elementClause = None if isinstance(element, collections.Iterable): elements = [] for _id in element: elements.append('?{} = <{}> '.format( ...
def _formatEvidence(self, elements): """ Formats elements passed into parts of a query for filtering """ elementClause = None filters = [] for evidence in elements: if evidence.description: elementClause = 'regex(?{}, "{}")'.format( ...
def _getIdentifier(self, url): """ Given a url identifier return identifier portion Leverages prefixes already in graph namespace Returns None if no match Ex. "http://www.drugbank.ca/drugs/DB01268" -> "DB01268" """ for prefix, namespace in self._rdfGraph.namespac...
def _getPrefixURL(self, url): """ Given a url return namespace prefix. Leverages prefixes already in graph namespace Ex. "http://www.drugbank.ca/drugs/DDD" -> "http://www.drugbank.ca/drugs/" """ for prefix, namespace in self._rdfGraph.namespaces(): ...
def _toGA4GH(self, association, featureSets=[]): """ given an association dict, return a protocol.FeaturePhenotypeAssociation """ # The association dict has the keys: environment, environment # label, evidence, feature label, phenotype and sources. Each # key's v...
def getAssociations( self, request=None, featureSets=[]): """ This query is the main search mechanism. It queries the graph for annotations that match the AND of [feature,environment,phenotype]. """ if len(featureSets) == 0: featureSets = self.getP...
def _formatFilterQuery(self, request=None, featureSets=[]): """ Generate a formatted sparql query with appropriate filters """ query = self._baseQuery() filters = [] if issubclass(request.__class__, protocol.SearchGenotypePhenotypeRequest): ...
def _filterSearchPhenotypesRequest(self, request): """ Filters request for phenotype search requests """ filters = [] if request.id: filters.append("?phenotype = <{}>".format(request.id)) if request.description: filters.append( 're...
def parseStep(self, line): """ Parse the line describing the mode. One of: variableStep chrom=<reference> [span=<window_size>] fixedStep chrom=<reference> start=<position> step=<step_interval> [span=<window_size>] Span is optional, defaulting to 1. It ...
def readWiggleLine(self, line): """ Read a wiggle line. If it is a data line, add values to the protocol object. """ if(line.isspace() or line.startswith("#") or line.startswith("browser") or line.startswith("track")): return elif line.startswi...
def wiggleFileHandleToProtocol(self, fileHandle): """ Return a continuous protocol object satsifiying the given query parameters from the given wiggle file handle. """ for line in fileHandle: self.readWiggleLine(line) return self._data
def checkReference(self, reference): """ Check the reference for security. Tries to avoid any characters necessary for doing a script injection. """ pattern = re.compile(r'[\s,;"\'&\\]') if pattern.findall(reference.strip()): return False return True
def readValuesPyBigWig(self, reference, start, end): """ Use pyBigWig package to read a BigWig file for the given range and return a protocol object. pyBigWig returns an array of values that fill the query range. Not sure if it is possible to get the step and span. This...
def readValuesBigWigToWig(self, reference, start, end): """ Read a bigwig file and return a protocol object with values within the query range. This method uses the bigWigToWig command line tool from UCSC GoldenPath. The tool is used to return values within a query region. ...
def toProtocolElement(self): """ Returns the representation of this ContinuousSet as the corresponding ProtocolElement. """ gaContinuousSet = protocol.ContinuousSet() gaContinuousSet.id = self.getId() gaContinuousSet.dataset_id = self.getParentContainer().getId() ...
def populateFromRow(self, continuousSetRecord): """ Populates the instance variables of this ContinuousSet from the specified DB row. """ self._filePath = continuousSetRecord.dataurl self.setAttributesJson(continuousSetRecord.attributes)
def getContinuous(self, referenceName=None, start=None, end=None): """ Method passed to runSearchRequest to fulfill the request to yield continuous protocol objects that satisfy the given query. :param str referenceName: name of reference (ex: "chr1") :param start: castable to i...
def getContinuousData(self, referenceName=None, start=None, end=None): """ Returns a set number of simulated continuous data. :param referenceName: name of reference to "search" on :param start: start coordinate of query :param end: end coordinate of query :return: Yield...
def load_template(self, template_name, template_source=None, template_path=None, **template_vars): """ Will load a templated configuration on the device. :param cls: Instance of the driver class. :param template_name: Identifies the template name. :param te...
def ping(self, destination, source=c.PING_SOURCE, ttl=c.PING_TTL, timeout=c.PING_TIMEOUT, size=c.PING_SIZE, count=c.PING_COUNT, vrf=c.PING_VRF): """ Executes ping on the device and returns a dictionary with the result :param destination: Host or IP Address of the destination ...
def run_commands(self, commands): """Only useful for EOS""" if "eos" in self.profile: return list(self.parent.cli(commands).values())[0] else: raise AttributeError("MockedDriver instance has not attribute '_rpc'")
def textfsm_extractor(cls, template_name, raw_text): """ Applies a TextFSM template over a raw text and return the matching table. Main usage of this method will be to extract data form a non-structured output from a network device and return the values in a table format. :param cls: Instance of t...
def find_txt(xml_tree, path, default=''): """ Extracts the text value from an XML tree, using XPath. In case of error, will return a default value. :param xml_tree: the XML Tree object. Assumed is <type 'lxml.etree._Element'>. :param path: XPath to be applied, in order to extract the desired da...
def convert(to, who, default=u''): """ Converts data to a specific datatype. In case of error, will return a default value. :param to: datatype to be casted to. :param who: value to cast. :param default: value to return in case of error. :return: a str value. """ if who is ...
def mac(raw): """ Converts a raw string to a standardised MAC Address EUI Format. :param raw: the raw string containing the value of the MAC Address :return: a string with the MAC Address in EUI format Example: .. code-block:: python >>> mac('0123.4567.89ab') u'01:23:45:67:89...
def compare_numeric(src_num, dst_num): """Compare numerical values. You can use '<%d','>%d'.""" dst_num = float(dst_num) match = numeric_compare_regex.match(src_num) if not match: error = "Failed numeric comparison. Collected: {}. Expected: {}".format(dst_num, src_num) raise ValueError(...
def colon_separated_string_to_dict(string, separator=':'): ''' Converts a string in the format: Name: Et3 Switchport: Enabled Administrative Mode: trunk Operational Mode: trunk MAC Address Learning: enabled Access Mode VLAN: 3 (VLAN0003) Trunking Native M...
def hyphen_range(string): ''' Expands a string of numbers separated by commas and hyphens into a list of integers. For example: 2-3,5-7,20-21,23,100-200 ''' list_numbers = list() temporary_list = string.split(',') for element in temporary_list: sub_element = element.split('-') ...
def convert_uptime_string_seconds(uptime): '''Convert uptime strings to seconds. The string can be formatted various ways.''' regex_list = [ # n years, n weeks, n days, n hours, n minutes where each of the fields except minutes # is optional. Additionally, can be either singular or plural ...
def create_endpoint(EndpointIdentifier=None, EndpointType=None, EngineName=None, Username=None, Password=None, ServerName=None, Port=None, DatabaseName=None, ExtraConnectionAttributes=None, KmsKeyId=None, Tags=None, CertificateArn=None, SslMode=None, DynamoDbSettings=None, S3Settings=None, MongoDbSettings=None): ""...
def create_replication_instance(ReplicationInstanceIdentifier=None, AllocatedStorage=None, ReplicationInstanceClass=None, VpcSecurityGroupIds=None, AvailabilityZone=None, ReplicationSubnetGroupIdentifier=None, PreferredMaintenanceWindow=None, MultiAZ=None, EngineVersion=None, AutoMinorVersionUpgrade=None, Tags=None, Km...
def create_replication_task(ReplicationTaskIdentifier=None, SourceEndpointArn=None, TargetEndpointArn=None, ReplicationInstanceArn=None, MigrationType=None, TableMappings=None, ReplicationTaskSettings=None, CdcStartTime=None, Tags=None): """ Creates a replication task using the specified parameters. See als...
def describe_events(SourceIdentifier=None, SourceType=None, StartTime=None, EndTime=None, Duration=None, EventCategories=None, Filters=None, MaxRecords=None, Marker=None): """ Lists events for a given source identifier and source type. You can also specify a start and end time. For more information on AWS DMS e...
def modify_endpoint(EndpointArn=None, EndpointIdentifier=None, EndpointType=None, EngineName=None, Username=None, Password=None, ServerName=None, Port=None, DatabaseName=None, ExtraConnectionAttributes=None, CertificateArn=None, SslMode=None, DynamoDbSettings=None, S3Settings=None, MongoDbSettings=None): """ Mo...
def modify_replication_instance(ReplicationInstanceArn=None, AllocatedStorage=None, ApplyImmediately=None, ReplicationInstanceClass=None, VpcSecurityGroupIds=None, PreferredMaintenanceWindow=None, MultiAZ=None, EngineVersion=None, AllowMajorVersionUpgrade=None, AutoMinorVersionUpgrade=None, ReplicationInstanceIdentifie...
def create_fleet(Name=None, ImageName=None, InstanceType=None, ComputeCapacity=None, VpcConfig=None, MaxUserDurationInSeconds=None, DisconnectTimeoutInSeconds=None, Description=None, DisplayName=None, EnableDefaultInternetAccess=None): """ Creates a new fleet. See also: AWS API Documentation :...
def update_fleet(ImageName=None, Name=None, InstanceType=None, ComputeCapacity=None, VpcConfig=None, MaxUserDurationInSeconds=None, DisconnectTimeoutInSeconds=None, DeleteVpcConfig=None, Description=None, DisplayName=None, EnableDefaultInternetAccess=None): """ Updates an existing fleet. All the attributes exce...
def create_deployment(applicationName=None, deploymentGroupName=None, revision=None, deploymentConfigName=None, description=None, ignoreApplicationStopFailures=None, targetInstances=None, autoRollbackConfiguration=None, updateOutdatedInstancesOnly=None, fileExistsBehavior=None): """ Deploys an application revis...
def create_deployment_group(applicationName=None, deploymentGroupName=None, deploymentConfigName=None, ec2TagFilters=None, onPremisesInstanceTagFilters=None, autoScalingGroups=None, serviceRoleArn=None, triggerConfigurations=None, alarmConfiguration=None, autoRollbackConfiguration=None, deploymentStyle=None, blueGreenD...
def update_deployment_group(applicationName=None, currentDeploymentGroupName=None, newDeploymentGroupName=None, deploymentConfigName=None, ec2TagFilters=None, onPremisesInstanceTagFilters=None, autoScalingGroups=None, serviceRoleArn=None, triggerConfigurations=None, alarmConfiguration=None, autoRollbackConfiguration=No...
def create_nfs_file_share(ClientToken=None, NFSFileShareDefaults=None, GatewayARN=None, KMSEncrypted=None, KMSKey=None, Role=None, LocationARN=None, DefaultStorageClass=None, ClientList=None, Squash=None, ReadOnly=None): """ Creates a file share on an existing file gateway. In Storage Gateway, a file share is a...
def create_target_group(Name=None, Protocol=None, Port=None, VpcId=None, HealthCheckProtocol=None, HealthCheckPort=None, HealthCheckPath=None, HealthCheckIntervalSeconds=None, HealthCheckTimeoutSeconds=None, HealthyThresholdCount=None, UnhealthyThresholdCount=None, Matcher=None): """ Creates a target group. ...
def modify_target_group(TargetGroupArn=None, HealthCheckProtocol=None, HealthCheckPort=None, HealthCheckPath=None, HealthCheckIntervalSeconds=None, HealthCheckTimeoutSeconds=None, HealthyThresholdCount=None, UnhealthyThresholdCount=None, Matcher=None): """ Modifies the health checks used when evaluating the hea...
def create_fleet(Name=None, Description=None, BuildId=None, ServerLaunchPath=None, ServerLaunchParameters=None, LogPaths=None, EC2InstanceType=None, EC2InboundPermissions=None, NewGameSessionProtectionPolicy=None, RuntimeConfiguration=None, ResourceCreationLimitPolicy=None, MetricGroups=None): """ Creates a new...
def send_email(Source=None, Destination=None, Message=None, ReplyToAddresses=None, ReturnPath=None, SourceArn=None, ReturnPathArn=None, Tags=None, ConfigurationSetName=None): """ Composes an email message based on input data, and then immediately queues the message for sending. There are several important p...
def get_metric_statistics(Namespace=None, MetricName=None, Dimensions=None, StartTime=None, EndTime=None, Period=None, Statistics=None, ExtendedStatistics=None, Unit=None): """ Gets statistics for the specified metric. Amazon CloudWatch retains metric data as follows: Note that CloudWatch started retain...
def put_metric_alarm(AlarmName=None, AlarmDescription=None, ActionsEnabled=None, OKActions=None, AlarmActions=None, InsufficientDataActions=None, MetricName=None, Namespace=None, Statistic=None, ExtendedStatistic=None, Dimensions=None, Period=None, Unit=None, EvaluationPeriods=None, Threshold=None, ComparisonOperator=N...
def create_auto_scaling_group(AutoScalingGroupName=None, LaunchConfigurationName=None, InstanceId=None, MinSize=None, MaxSize=None, DesiredCapacity=None, DefaultCooldown=None, AvailabilityZones=None, LoadBalancerNames=None, TargetGroupARNs=None, HealthCheckType=None, HealthCheckGracePeriod=None, PlacementGroup=None, VP...
def create_launch_configuration(LaunchConfigurationName=None, ImageId=None, KeyName=None, SecurityGroups=None, ClassicLinkVPCId=None, ClassicLinkVPCSecurityGroups=None, UserData=None, InstanceId=None, InstanceType=None, KernelId=None, RamdiskId=None, BlockDeviceMappings=None, InstanceMonitoring=None, SpotPrice=None, Ia...
def put_scaling_policy(AutoScalingGroupName=None, PolicyName=None, PolicyType=None, AdjustmentType=None, MinAdjustmentStep=None, MinAdjustmentMagnitude=None, ScalingAdjustment=None, Cooldown=None, MetricAggregationType=None, StepAdjustments=None, EstimatedInstanceWarmup=None): """ Creates or updates a policy fo...
def put_scheduled_update_group_action(AutoScalingGroupName=None, ScheduledActionName=None, Time=None, StartTime=None, EndTime=None, Recurrence=None, MinSize=None, MaxSize=None, DesiredCapacity=None): """ Creates or updates a scheduled scaling action for an Auto Scaling group. When updating a scheduled scaling a...
def update_auto_scaling_group(AutoScalingGroupName=None, LaunchConfigurationName=None, MinSize=None, MaxSize=None, DesiredCapacity=None, DefaultCooldown=None, AvailabilityZones=None, HealthCheckType=None, HealthCheckGracePeriod=None, PlacementGroup=None, VPCZoneIdentifier=None, TerminationPolicies=None, NewInstancesPro...
def search(cursor=None, expr=None, facet=None, filterQuery=None, highlight=None, partial=None, query=None, queryOptions=None, queryParser=None, returnFields=None, size=None, sort=None, start=None, stats=None): """ Retrieves a list of documents that match the specified search criteria. How you specify the search...
def clone_stack(SourceStackId=None, Name=None, Region=None, VpcId=None, Attributes=None, ServiceRoleArn=None, DefaultInstanceProfileArn=None, DefaultOs=None, HostnameTheme=None, DefaultAvailabilityZone=None, DefaultSubnetId=None, CustomJson=None, ConfigurationManager=None, ChefConfiguration=None, UseCustomCookbooks=Non...
def create_app(StackId=None, Shortname=None, Name=None, Description=None, DataSources=None, Type=None, AppSource=None, Domains=None, EnableSsl=None, SslConfiguration=None, Attributes=None, Environment=None): """ Creates an app for a specified stack. For more information, see Creating Apps . See also: AWS AP...
def create_instance(StackId=None, LayerIds=None, InstanceType=None, AutoScalingType=None, Hostname=None, Os=None, AmiId=None, SshKeyName=None, AvailabilityZone=None, VirtualizationType=None, SubnetId=None, Architecture=None, RootDeviceType=None, BlockDeviceMappings=None, InstallUpdatesOnBoot=None, EbsOptimized=None, Ag...
def create_layer(StackId=None, Type=None, Name=None, Shortname=None, Attributes=None, CloudWatchLogsConfiguration=None, CustomInstanceProfileArn=None, CustomJson=None, CustomSecurityGroupIds=None, Packages=None, VolumeConfigurations=None, EnableAutoHealing=None, AutoAssignElasticIps=None, AutoAssignPublicIps=None, Cust...
def create_stack(Name=None, Region=None, VpcId=None, Attributes=None, ServiceRoleArn=None, DefaultInstanceProfileArn=None, DefaultOs=None, HostnameTheme=None, DefaultAvailabilityZone=None, DefaultSubnetId=None, CustomJson=None, ConfigurationManager=None, ChefConfiguration=None, UseCustomCookbooks=None, UseOpsworksSecur...
def update_app(AppId=None, Name=None, Description=None, DataSources=None, Type=None, AppSource=None, Domains=None, EnableSsl=None, SslConfiguration=None, Attributes=None, Environment=None): """ Updates a specified app. See also: AWS API Documentation :example: response = client.update_app( ...
def update_instance(InstanceId=None, LayerIds=None, InstanceType=None, AutoScalingType=None, Hostname=None, Os=None, AmiId=None, SshKeyName=None, Architecture=None, InstallUpdatesOnBoot=None, EbsOptimized=None, AgentVersion=None): """ Updates a specified instance. See also: AWS API Documentation ...
def update_layer(LayerId=None, Name=None, Shortname=None, Attributes=None, CloudWatchLogsConfiguration=None, CustomInstanceProfileArn=None, CustomJson=None, CustomSecurityGroupIds=None, Packages=None, VolumeConfigurations=None, EnableAutoHealing=None, AutoAssignElasticIps=None, AutoAssignPublicIps=None, CustomRecipes=N...
def update_stack(StackId=None, Name=None, Attributes=None, ServiceRoleArn=None, DefaultInstanceProfileArn=None, DefaultOs=None, HostnameTheme=None, DefaultAvailabilityZone=None, DefaultSubnetId=None, CustomJson=None, ConfigurationManager=None, ChefConfiguration=None, UseCustomCookbooks=None, CustomCookbooksSource=None,...
def create_project(name=None, description=None, source=None, artifacts=None, environment=None, serviceRole=None, timeoutInMinutes=None, encryptionKey=None, tags=None): """ Creates a build project. See also: AWS API Documentation :example: response = client.create_project( name='string'...
def put_bot(name=None, description=None, intents=None, clarificationPrompt=None, abortStatement=None, idleSessionTTLInSeconds=None, voiceId=None, checksum=None, processBehavior=None, locale=None, childDirected=None): """ Creates an Amazon Lex conversational bot or replaces an existing bot. When you create or up...
def put_intent(name=None, description=None, slots=None, sampleUtterances=None, confirmationPrompt=None, rejectionStatement=None, followUpPrompt=None, conclusionStatement=None, dialogCodeHook=None, fulfillmentActivity=None, parentIntentSignature=None, checksum=None): """ Creates an intent or replaces an existing...
def create_cache_cluster(CacheClusterId=None, ReplicationGroupId=None, AZMode=None, PreferredAvailabilityZone=None, PreferredAvailabilityZones=None, NumCacheNodes=None, CacheNodeType=None, Engine=None, EngineVersion=None, CacheParameterGroupName=None, CacheSubnetGroupName=None, CacheSecurityGroupNames=None, SecurityGro...
def create_replication_group(ReplicationGroupId=None, ReplicationGroupDescription=None, PrimaryClusterId=None, AutomaticFailoverEnabled=None, NumCacheClusters=None, PreferredCacheClusterAZs=None, NumNodeGroups=None, ReplicasPerNodeGroup=None, NodeGroupConfiguration=None, CacheNodeType=None, Engine=None, EngineVersion=N...
def modify_cache_cluster(CacheClusterId=None, NumCacheNodes=None, CacheNodeIdsToRemove=None, AZMode=None, NewAvailabilityZones=None, CacheSecurityGroupNames=None, SecurityGroupIds=None, PreferredMaintenanceWindow=None, NotificationTopicArn=None, CacheParameterGroupName=None, NotificationTopicStatus=None, ApplyImmediate...
def modify_replication_group(ReplicationGroupId=None, ReplicationGroupDescription=None, PrimaryClusterId=None, SnapshottingClusterId=None, AutomaticFailoverEnabled=None, CacheSecurityGroupNames=None, SecurityGroupIds=None, PreferredMaintenanceWindow=None, NotificationTopicArn=None, CacheParameterGroupName=None, Notific...
def run_job_flow(Name=None, LogUri=None, AdditionalInfo=None, AmiVersion=None, ReleaseLabel=None, Instances=None, Steps=None, BootstrapActions=None, SupportedProducts=None, NewSupportedProducts=None, Applications=None, Configurations=None, VisibleToAllUsers=None, JobFlowRole=None, ServiceRole=None, Tags=None, SecurityC...
def describe_batch_predictions(FilterVariable=None, EQ=None, GT=None, LT=None, GE=None, LE=None, NE=None, Prefix=None, SortOrder=None, NextToken=None, Limit=None): """ Returns a list of BatchPrediction operations that match the search criteria in the request. See also: AWS API Documentation :e...
def delete_item(TableName=None, Key=None, Expected=None, ConditionalOperator=None, ReturnValues=None, ReturnConsumedCapacity=None, ReturnItemCollectionMetrics=None, ConditionExpression=None, ExpressionAttributeNames=None, ExpressionAttributeValues=None): """ Deletes a single item in a table by primary key. You ...
def put_item(TableName=None, Item=None, Expected=None, ReturnValues=None, ReturnConsumedCapacity=None, ReturnItemCollectionMetrics=None, ConditionalOperator=None, ConditionExpression=None, ExpressionAttributeNames=None, ExpressionAttributeValues=None): """ Creates a new item, or replaces an old item with a new ...
def query(TableName=None, IndexName=None, Select=None, AttributesToGet=None, Limit=None, ConsistentRead=None, KeyConditions=None, QueryFilter=None, ConditionalOperator=None, ScanIndexForward=None, ExclusiveStartKey=None, ReturnConsumedCapacity=None, ProjectionExpression=None, FilterExpression=None, KeyConditionExpressi...
def scan(TableName=None, IndexName=None, AttributesToGet=None, Limit=None, Select=None, ScanFilter=None, ConditionalOperator=None, ExclusiveStartKey=None, ReturnConsumedCapacity=None, TotalSegments=None, Segment=None, ProjectionExpression=None, FilterExpression=None, ExpressionAttributeNames=None, ExpressionAttributeVa...
def update_item(TableName=None, Key=None, AttributeUpdates=None, Expected=None, ConditionalOperator=None, ReturnValues=None, ReturnConsumedCapacity=None, ReturnItemCollectionMetrics=None, UpdateExpression=None, ConditionExpression=None, ExpressionAttributeNames=None, ExpressionAttributeValues=None): """ Edits a...
def create_service(cluster=None, serviceName=None, taskDefinition=None, loadBalancers=None, desiredCount=None, clientToken=None, role=None, deploymentConfiguration=None, placementConstraints=None, placementStrategy=None): """ Runs and maintains a desired number of tasks from a specified task definition. If the ...
def register_domain(DomainName=None, IdnLangCode=None, DurationInYears=None, AutoRenew=None, AdminContact=None, RegistrantContact=None, TechContact=None, PrivacyProtectAdminContact=None, PrivacyProtectRegistrantContact=None, PrivacyProtectTechContact=None): """ This operation registers a domain. Domains are reg...
def transfer_domain(DomainName=None, IdnLangCode=None, DurationInYears=None, Nameservers=None, AuthCode=None, AutoRenew=None, AdminContact=None, RegistrantContact=None, TechContact=None, PrivacyProtectAdminContact=None, PrivacyProtectRegistrantContact=None, PrivacyProtectTechContact=None): """ This operation tr...
def simulate_custom_policy(PolicyInputList=None, ActionNames=None, ResourceArns=None, ResourcePolicy=None, ResourceOwner=None, CallerArn=None, ContextEntries=None, ResourceHandlingOption=None, MaxItems=None, Marker=None): """ Simulate how a set of IAM policies and optionally a resource-based policy works with a...
def simulate_principal_policy(PolicySourceArn=None, PolicyInputList=None, ActionNames=None, ResourceArns=None, ResourcePolicy=None, ResourceOwner=None, CallerArn=None, ContextEntries=None, ResourceHandlingOption=None, MaxItems=None, Marker=None): """ Simulate how a set of IAM policies attached to an IAM entity ...

def setSpeciesFromJson(self, speciesJson): """ Sets the species, an OntologyTerm, to the specified value, given as a JSON string. See the documentation for details of this field. """ try: parsed = protocol.fromJson(speciesJson, protocol.OntologyTerm) ...

def getReferenceByName(self, name): """ Returns the reference with the specified name. """ if name not in self._referenceNameMap: raise exceptions.ReferenceNameNotFoundException(name) return self._referenceNameMap[name]

def getReference(self, id_): """ Returns the Reference with the specified ID or raises a ReferenceNotFoundException if it does not exist. """ if id_ not in self._referenceIdMap: raise exceptions.ReferenceNotFoundException(id_) return self._referenceIdMap[id_]

def getMd5Checksum(self): """ Returns the MD5 checksum for this reference set. This checksum is calculated by making a list of `Reference.md5checksum` for all `Reference`s in this set. We then sort this list, and take the MD5 hash of all the strings concatenated together. ...

def toProtocolElement(self): """ Returns the GA4GH protocol representation of this ReferenceSet. """ ret = protocol.ReferenceSet() ret.assembly_id = pb.string(self.getAssemblyId()) ret.description = pb.string(self.getDescription()) ret.id = self.getId() re...

def toProtocolElement(self): """ Returns the GA4GH protocol representation of this Reference. """ reference = protocol.Reference() reference.id = self.getId() reference.is_derived = self.getIsDerived() reference.length = self.getLength() reference.md5check...

def checkQueryRange(self, start, end): """ Checks to ensure that the query range is valid within this reference. If not, raise ReferenceRangeErrorException. """ condition = ( (start < 0 or end > self.getLength()) or start > end or start == end) if ...

def populateFromFile(self, dataUrl): """ Populates the instance variables of this ReferencSet from the data URL. """ self._dataUrl = dataUrl fastaFile = self.getFastaFile() for referenceName in fastaFile.references: reference = HtslibReference(self, re...

def populateFromRow(self, referenceSetRecord): """ Populates this reference set from the values in the specified DB row. """ self._dataUrl = referenceSetRecord.dataurl self._description = referenceSetRecord.description self._assemblyId = referenceSetRecord.assembl...

def populateFromRow(self, referenceRecord): """ Populates this reference from the values in the specified DB row. """ self._length = referenceRecord.length self._isDerived = bool(referenceRecord.isderived) self._md5checksum = referenceRecord.md5checksum species = ...

def _extractAssociationsDetails(self, associations): """ Given a set of results from our search query, return the `details` (feature,environment,phenotype) """ detailedURIRef = [] for row in associations.bindings: if 'feature' in row: detailedU...

def _detailTuples(self, uriRefs): """ Given a list of uriRefs, return a list of dicts: {'subject': s, 'predicate': p, 'object': o } all values are strings """ details = [] for uriRef in uriRefs: for subject, predicate, object_ in self._rdfGraph.triples...

def _bindingsToDict(self, bindings): """ Given a binding from the sparql query result, create a dict of plain text """ myDict = {} for key, val in bindings.iteritems(): myDict[key.toPython().replace('?', '')] = val.toPython() return myDict

def _addDataFile(self, filename): """ Given a filename, add it to the graph """ if filename.endswith('.ttl'): self._rdfGraph.parse(filename, format='n3') else: self._rdfGraph.parse(filename, format='xml')

def _getDetails(self, uriRef, associations_details): """ Given a uriRef, return a dict of all the details for that Ref use the uriRef as the 'id' of the dict """ associationDetail = {} for detail in associations_details: if detail['subject'] == uriRef: ...

def _formatExternalIdentifiers(self, element, element_type): """ Formats several external identifiers for query """ elementClause = None elements = [] if not issubclass(element.__class__, dict): element = protocol.toJsonDict(element) if element['extern...

def _formatExternalIdentifier(self, element, element_type): """ Formats a single external identifier for query """ if "http" not in element['database']: term = "{}:{}".format(element['database'], element['identifier']) namespaceTerm = self._toNamespaceURL(term) ...

def _formatOntologyTerm(self, element, element_type): """ Formats the ontology terms for query """ elementClause = None if isinstance(element, dict) and element.get('terms'): elements = [] for _term in element['terms']: if _term.get('id'): ...

def _formatOntologyTermObject(self, terms, element_type): """ Formats the ontology term object for query """ elementClause = None if not isinstance(terms, collections.Iterable): terms = [terms] elements = [] for term in terms: if term.term_...

def _formatIds(self, element, element_type): """ Formats a set of identifiers for query """ elementClause = None if isinstance(element, collections.Iterable): elements = [] for _id in element: elements.append('?{} = <{}> '.format( ...

def _formatEvidence(self, elements): """ Formats elements passed into parts of a query for filtering """ elementClause = None filters = [] for evidence in elements: if evidence.description: elementClause = 'regex(?{}, "{}")'.format( ...

def _getIdentifier(self, url): """ Given a url identifier return identifier portion Leverages prefixes already in graph namespace Returns None if no match Ex. "http://www.drugbank.ca/drugs/DB01268" -> "DB01268" """ for prefix, namespace in self._rdfGraph.namespac...

def _getPrefixURL(self, url): """ Given a url return namespace prefix. Leverages prefixes already in graph namespace Ex. "http://www.drugbank.ca/drugs/DDD" -> "http://www.drugbank.ca/drugs/" """ for prefix, namespace in self._rdfGraph.namespaces(): ...

def _toGA4GH(self, association, featureSets=[]): """ given an association dict, return a protocol.FeaturePhenotypeAssociation """ # The association dict has the keys: environment, environment # label, evidence, feature label, phenotype and sources. Each # key's v...

def getAssociations( self, request=None, featureSets=[]): """ This query is the main search mechanism. It queries the graph for annotations that match the AND of [feature,environment,phenotype]. """ if len(featureSets) == 0: featureSets = self.getP...

def _formatFilterQuery(self, request=None, featureSets=[]): """ Generate a formatted sparql query with appropriate filters """ query = self._baseQuery() filters = [] if issubclass(request.__class__, protocol.SearchGenotypePhenotypeRequest): ...

def _filterSearchPhenotypesRequest(self, request): """ Filters request for phenotype search requests """ filters = [] if request.id: filters.append("?phenotype = <{}>".format(request.id)) if request.description: filters.append( 're...

def parseStep(self, line): """ Parse the line describing the mode. One of: variableStep chrom=<reference> [span=<window_size>] fixedStep chrom=<reference> start=<position> step=<step_interval> [span=<window_size>] Span is optional, defaulting to 1. It ...

def readWiggleLine(self, line): """ Read a wiggle line. If it is a data line, add values to the protocol object. """ if(line.isspace() or line.startswith("#") or line.startswith("browser") or line.startswith("track")): return elif line.startswi...

def wiggleFileHandleToProtocol(self, fileHandle): """ Return a continuous protocol object satsifiying the given query parameters from the given wiggle file handle. """ for line in fileHandle: self.readWiggleLine(line) return self._data

def checkReference(self, reference): """ Check the reference for security. Tries to avoid any characters necessary for doing a script injection. """ pattern = re.compile(r'[\s,;"\'&\\]') if pattern.findall(reference.strip()): return False return True

def readValuesPyBigWig(self, reference, start, end): """ Use pyBigWig package to read a BigWig file for the given range and return a protocol object. pyBigWig returns an array of values that fill the query range. Not sure if it is possible to get the step and span. This...

def readValuesBigWigToWig(self, reference, start, end): """ Read a bigwig file and return a protocol object with values within the query range. This method uses the bigWigToWig command line tool from UCSC GoldenPath. The tool is used to return values within a query region. ...

def toProtocolElement(self): """ Returns the representation of this ContinuousSet as the corresponding ProtocolElement. """ gaContinuousSet = protocol.ContinuousSet() gaContinuousSet.id = self.getId() gaContinuousSet.dataset_id = self.getParentContainer().getId() ...

def populateFromRow(self, continuousSetRecord): """ Populates the instance variables of this ContinuousSet from the specified DB row. """ self._filePath = continuousSetRecord.dataurl self.setAttributesJson(continuousSetRecord.attributes)

def getContinuous(self, referenceName=None, start=None, end=None): """ Method passed to runSearchRequest to fulfill the request to yield continuous protocol objects that satisfy the given query. :param str referenceName: name of reference (ex: "chr1") :param start: castable to i...

def getContinuousData(self, referenceName=None, start=None, end=None): """ Returns a set number of simulated continuous data. :param referenceName: name of reference to "search" on :param start: start coordinate of query :param end: end coordinate of query :return: Yield...

def load_template(self, template_name, template_source=None, template_path=None, **template_vars): """ Will load a templated configuration on the device. :param cls: Instance of the driver class. :param template_name: Identifies the template name. :param te...

def ping(self, destination, source=c.PING_SOURCE, ttl=c.PING_TTL, timeout=c.PING_TIMEOUT, size=c.PING_SIZE, count=c.PING_COUNT, vrf=c.PING_VRF): """ Executes ping on the device and returns a dictionary with the result :param destination: Host or IP Address of the destination ...

def run_commands(self, commands): """Only useful for EOS""" if "eos" in self.profile: return list(self.parent.cli(commands).values())[0] else: raise AttributeError("MockedDriver instance has not attribute '_rpc'")

def textfsm_extractor(cls, template_name, raw_text): """ Applies a TextFSM template over a raw text and return the matching table. Main usage of this method will be to extract data form a non-structured output from a network device and return the values in a table format. :param cls: Instance of t...

def find_txt(xml_tree, path, default=''): """ Extracts the text value from an XML tree, using XPath. In case of error, will return a default value. :param xml_tree: the XML Tree object. Assumed is <type 'lxml.etree._Element'>. :param path: XPath to be applied, in order to extract the desired da...

def convert(to, who, default=u''): """ Converts data to a specific datatype. In case of error, will return a default value. :param to: datatype to be casted to. :param who: value to cast. :param default: value to return in case of error. :return: a str value. """ if who is ...

def mac(raw): """ Converts a raw string to a standardised MAC Address EUI Format. :param raw: the raw string containing the value of the MAC Address :return: a string with the MAC Address in EUI format Example: .. code-block:: python >>> mac('0123.4567.89ab') u'01:23:45:67:89...

def compare_numeric(src_num, dst_num): """Compare numerical values. You can use '<%d','>%d'.""" dst_num = float(dst_num) match = numeric_compare_regex.match(src_num) if not match: error = "Failed numeric comparison. Collected: {}. Expected: {}".format(dst_num, src_num) raise ValueError(...

def colon_separated_string_to_dict(string, separator=':'): ''' Converts a string in the format: Name: Et3 Switchport: Enabled Administrative Mode: trunk Operational Mode: trunk MAC Address Learning: enabled Access Mode VLAN: 3 (VLAN0003) Trunking Native M...

def hyphen_range(string): ''' Expands a string of numbers separated by commas and hyphens into a list of integers. For example: 2-3,5-7,20-21,23,100-200 ''' list_numbers = list() temporary_list = string.split(',') for element in temporary_list: sub_element = element.split('-') ...

def convert_uptime_string_seconds(uptime): '''Convert uptime strings to seconds. The string can be formatted various ways.''' regex_list = [ # n years, n weeks, n days, n hours, n minutes where each of the fields except minutes # is optional. Additionally, can be either singular or plural ...

def create_endpoint(EndpointIdentifier=None, EndpointType=None, EngineName=None, Username=None, Password=None, ServerName=None, Port=None, DatabaseName=None, ExtraConnectionAttributes=None, KmsKeyId=None, Tags=None, CertificateArn=None, SslMode=None, DynamoDbSettings=None, S3Settings=None, MongoDbSettings=None): ""...

def create_replication_instance(ReplicationInstanceIdentifier=None, AllocatedStorage=None, ReplicationInstanceClass=None, VpcSecurityGroupIds=None, AvailabilityZone=None, ReplicationSubnetGroupIdentifier=None, PreferredMaintenanceWindow=None, MultiAZ=None, EngineVersion=None, AutoMinorVersionUpgrade=None, Tags=None, Km...

def create_replication_task(ReplicationTaskIdentifier=None, SourceEndpointArn=None, TargetEndpointArn=None, ReplicationInstanceArn=None, MigrationType=None, TableMappings=None, ReplicationTaskSettings=None, CdcStartTime=None, Tags=None): """ Creates a replication task using the specified parameters. See als...

def describe_events(SourceIdentifier=None, SourceType=None, StartTime=None, EndTime=None, Duration=None, EventCategories=None, Filters=None, MaxRecords=None, Marker=None): """ Lists events for a given source identifier and source type. You can also specify a start and end time. For more information on AWS DMS e...

def modify_endpoint(EndpointArn=None, EndpointIdentifier=None, EndpointType=None, EngineName=None, Username=None, Password=None, ServerName=None, Port=None, DatabaseName=None, ExtraConnectionAttributes=None, CertificateArn=None, SslMode=None, DynamoDbSettings=None, S3Settings=None, MongoDbSettings=None): """ Mo...

def modify_replication_instance(ReplicationInstanceArn=None, AllocatedStorage=None, ApplyImmediately=None, ReplicationInstanceClass=None, VpcSecurityGroupIds=None, PreferredMaintenanceWindow=None, MultiAZ=None, EngineVersion=None, AllowMajorVersionUpgrade=None, AutoMinorVersionUpgrade=None, ReplicationInstanceIdentifie...

def create_fleet(Name=None, ImageName=None, InstanceType=None, ComputeCapacity=None, VpcConfig=None, MaxUserDurationInSeconds=None, DisconnectTimeoutInSeconds=None, Description=None, DisplayName=None, EnableDefaultInternetAccess=None): """ Creates a new fleet. See also: AWS API Documentation :...

def update_fleet(ImageName=None, Name=None, InstanceType=None, ComputeCapacity=None, VpcConfig=None, MaxUserDurationInSeconds=None, DisconnectTimeoutInSeconds=None, DeleteVpcConfig=None, Description=None, DisplayName=None, EnableDefaultInternetAccess=None): """ Updates an existing fleet. All the attributes exce...

def create_deployment(applicationName=None, deploymentGroupName=None, revision=None, deploymentConfigName=None, description=None, ignoreApplicationStopFailures=None, targetInstances=None, autoRollbackConfiguration=None, updateOutdatedInstancesOnly=None, fileExistsBehavior=None): """ Deploys an application revis...

def create_deployment_group(applicationName=None, deploymentGroupName=None, deploymentConfigName=None, ec2TagFilters=None, onPremisesInstanceTagFilters=None, autoScalingGroups=None, serviceRoleArn=None, triggerConfigurations=None, alarmConfiguration=None, autoRollbackConfiguration=None, deploymentStyle=None, blueGreenD...

def update_deployment_group(applicationName=None, currentDeploymentGroupName=None, newDeploymentGroupName=None, deploymentConfigName=None, ec2TagFilters=None, onPremisesInstanceTagFilters=None, autoScalingGroups=None, serviceRoleArn=None, triggerConfigurations=None, alarmConfiguration=None, autoRollbackConfiguration=No...

def create_nfs_file_share(ClientToken=None, NFSFileShareDefaults=None, GatewayARN=None, KMSEncrypted=None, KMSKey=None, Role=None, LocationARN=None, DefaultStorageClass=None, ClientList=None, Squash=None, ReadOnly=None): """ Creates a file share on an existing file gateway. In Storage Gateway, a file share is a...

def create_target_group(Name=None, Protocol=None, Port=None, VpcId=None, HealthCheckProtocol=None, HealthCheckPort=None, HealthCheckPath=None, HealthCheckIntervalSeconds=None, HealthCheckTimeoutSeconds=None, HealthyThresholdCount=None, UnhealthyThresholdCount=None, Matcher=None): """ Creates a target group. ...

def modify_target_group(TargetGroupArn=None, HealthCheckProtocol=None, HealthCheckPort=None, HealthCheckPath=None, HealthCheckIntervalSeconds=None, HealthCheckTimeoutSeconds=None, HealthyThresholdCount=None, UnhealthyThresholdCount=None, Matcher=None): """ Modifies the health checks used when evaluating the hea...

def create_fleet(Name=None, Description=None, BuildId=None, ServerLaunchPath=None, ServerLaunchParameters=None, LogPaths=None, EC2InstanceType=None, EC2InboundPermissions=None, NewGameSessionProtectionPolicy=None, RuntimeConfiguration=None, ResourceCreationLimitPolicy=None, MetricGroups=None): """ Creates a new...

def send_email(Source=None, Destination=None, Message=None, ReplyToAddresses=None, ReturnPath=None, SourceArn=None, ReturnPathArn=None, Tags=None, ConfigurationSetName=None): """ Composes an email message based on input data, and then immediately queues the message for sending. There are several important p...

def get_metric_statistics(Namespace=None, MetricName=None, Dimensions=None, StartTime=None, EndTime=None, Period=None, Statistics=None, ExtendedStatistics=None, Unit=None): """ Gets statistics for the specified metric. Amazon CloudWatch retains metric data as follows: Note that CloudWatch started retain...

def put_metric_alarm(AlarmName=None, AlarmDescription=None, ActionsEnabled=None, OKActions=None, AlarmActions=None, InsufficientDataActions=None, MetricName=None, Namespace=None, Statistic=None, ExtendedStatistic=None, Dimensions=None, Period=None, Unit=None, EvaluationPeriods=None, Threshold=None, ComparisonOperator=N...

def create_auto_scaling_group(AutoScalingGroupName=None, LaunchConfigurationName=None, InstanceId=None, MinSize=None, MaxSize=None, DesiredCapacity=None, DefaultCooldown=None, AvailabilityZones=None, LoadBalancerNames=None, TargetGroupARNs=None, HealthCheckType=None, HealthCheckGracePeriod=None, PlacementGroup=None, VP...

def create_launch_configuration(LaunchConfigurationName=None, ImageId=None, KeyName=None, SecurityGroups=None, ClassicLinkVPCId=None, ClassicLinkVPCSecurityGroups=None, UserData=None, InstanceId=None, InstanceType=None, KernelId=None, RamdiskId=None, BlockDeviceMappings=None, InstanceMonitoring=None, SpotPrice=None, Ia...

def put_scaling_policy(AutoScalingGroupName=None, PolicyName=None, PolicyType=None, AdjustmentType=None, MinAdjustmentStep=None, MinAdjustmentMagnitude=None, ScalingAdjustment=None, Cooldown=None, MetricAggregationType=None, StepAdjustments=None, EstimatedInstanceWarmup=None): """ Creates or updates a policy fo...

def put_scheduled_update_group_action(AutoScalingGroupName=None, ScheduledActionName=None, Time=None, StartTime=None, EndTime=None, Recurrence=None, MinSize=None, MaxSize=None, DesiredCapacity=None): """ Creates or updates a scheduled scaling action for an Auto Scaling group. When updating a scheduled scaling a...

def update_auto_scaling_group(AutoScalingGroupName=None, LaunchConfigurationName=None, MinSize=None, MaxSize=None, DesiredCapacity=None, DefaultCooldown=None, AvailabilityZones=None, HealthCheckType=None, HealthCheckGracePeriod=None, PlacementGroup=None, VPCZoneIdentifier=None, TerminationPolicies=None, NewInstancesPro...

def search(cursor=None, expr=None, facet=None, filterQuery=None, highlight=None, partial=None, query=None, queryOptions=None, queryParser=None, returnFields=None, size=None, sort=None, start=None, stats=None): """ Retrieves a list of documents that match the specified search criteria. How you specify the search...

def clone_stack(SourceStackId=None, Name=None, Region=None, VpcId=None, Attributes=None, ServiceRoleArn=None, DefaultInstanceProfileArn=None, DefaultOs=None, HostnameTheme=None, DefaultAvailabilityZone=None, DefaultSubnetId=None, CustomJson=None, ConfigurationManager=None, ChefConfiguration=None, UseCustomCookbooks=Non...

def create_app(StackId=None, Shortname=None, Name=None, Description=None, DataSources=None, Type=None, AppSource=None, Domains=None, EnableSsl=None, SslConfiguration=None, Attributes=None, Environment=None): """ Creates an app for a specified stack. For more information, see Creating Apps . See also: AWS AP...

def create_instance(StackId=None, LayerIds=None, InstanceType=None, AutoScalingType=None, Hostname=None, Os=None, AmiId=None, SshKeyName=None, AvailabilityZone=None, VirtualizationType=None, SubnetId=None, Architecture=None, RootDeviceType=None, BlockDeviceMappings=None, InstallUpdatesOnBoot=None, EbsOptimized=None, Ag...

def create_layer(StackId=None, Type=None, Name=None, Shortname=None, Attributes=None, CloudWatchLogsConfiguration=None, CustomInstanceProfileArn=None, CustomJson=None, CustomSecurityGroupIds=None, Packages=None, VolumeConfigurations=None, EnableAutoHealing=None, AutoAssignElasticIps=None, AutoAssignPublicIps=None, Cust...

def create_stack(Name=None, Region=None, VpcId=None, Attributes=None, ServiceRoleArn=None, DefaultInstanceProfileArn=None, DefaultOs=None, HostnameTheme=None, DefaultAvailabilityZone=None, DefaultSubnetId=None, CustomJson=None, ConfigurationManager=None, ChefConfiguration=None, UseCustomCookbooks=None, UseOpsworksSecur...

def update_app(AppId=None, Name=None, Description=None, DataSources=None, Type=None, AppSource=None, Domains=None, EnableSsl=None, SslConfiguration=None, Attributes=None, Environment=None): """ Updates a specified app. See also: AWS API Documentation :example: response = client.update_app( ...

def update_instance(InstanceId=None, LayerIds=None, InstanceType=None, AutoScalingType=None, Hostname=None, Os=None, AmiId=None, SshKeyName=None, Architecture=None, InstallUpdatesOnBoot=None, EbsOptimized=None, AgentVersion=None): """ Updates a specified instance. See also: AWS API Documentation ...

def update_layer(LayerId=None, Name=None, Shortname=None, Attributes=None, CloudWatchLogsConfiguration=None, CustomInstanceProfileArn=None, CustomJson=None, CustomSecurityGroupIds=None, Packages=None, VolumeConfigurations=None, EnableAutoHealing=None, AutoAssignElasticIps=None, AutoAssignPublicIps=None, CustomRecipes=N...

def update_stack(StackId=None, Name=None, Attributes=None, ServiceRoleArn=None, DefaultInstanceProfileArn=None, DefaultOs=None, HostnameTheme=None, DefaultAvailabilityZone=None, DefaultSubnetId=None, CustomJson=None, ConfigurationManager=None, ChefConfiguration=None, UseCustomCookbooks=None, CustomCookbooksSource=None,...

def create_project(name=None, description=None, source=None, artifacts=None, environment=None, serviceRole=None, timeoutInMinutes=None, encryptionKey=None, tags=None): """ Creates a build project. See also: AWS API Documentation :example: response = client.create_project( name='string'...

def put_bot(name=None, description=None, intents=None, clarificationPrompt=None, abortStatement=None, idleSessionTTLInSeconds=None, voiceId=None, checksum=None, processBehavior=None, locale=None, childDirected=None): """ Creates an Amazon Lex conversational bot or replaces an existing bot. When you create or up...

def put_intent(name=None, description=None, slots=None, sampleUtterances=None, confirmationPrompt=None, rejectionStatement=None, followUpPrompt=None, conclusionStatement=None, dialogCodeHook=None, fulfillmentActivity=None, parentIntentSignature=None, checksum=None): """ Creates an intent or replaces an existing...

def create_cache_cluster(CacheClusterId=None, ReplicationGroupId=None, AZMode=None, PreferredAvailabilityZone=None, PreferredAvailabilityZones=None, NumCacheNodes=None, CacheNodeType=None, Engine=None, EngineVersion=None, CacheParameterGroupName=None, CacheSubnetGroupName=None, CacheSecurityGroupNames=None, SecurityGro...

def create_replication_group(ReplicationGroupId=None, ReplicationGroupDescription=None, PrimaryClusterId=None, AutomaticFailoverEnabled=None, NumCacheClusters=None, PreferredCacheClusterAZs=None, NumNodeGroups=None, ReplicasPerNodeGroup=None, NodeGroupConfiguration=None, CacheNodeType=None, Engine=None, EngineVersion=N...

def modify_cache_cluster(CacheClusterId=None, NumCacheNodes=None, CacheNodeIdsToRemove=None, AZMode=None, NewAvailabilityZones=None, CacheSecurityGroupNames=None, SecurityGroupIds=None, PreferredMaintenanceWindow=None, NotificationTopicArn=None, CacheParameterGroupName=None, NotificationTopicStatus=None, ApplyImmediate...

def modify_replication_group(ReplicationGroupId=None, ReplicationGroupDescription=None, PrimaryClusterId=None, SnapshottingClusterId=None, AutomaticFailoverEnabled=None, CacheSecurityGroupNames=None, SecurityGroupIds=None, PreferredMaintenanceWindow=None, NotificationTopicArn=None, CacheParameterGroupName=None, Notific...

def run_job_flow(Name=None, LogUri=None, AdditionalInfo=None, AmiVersion=None, ReleaseLabel=None, Instances=None, Steps=None, BootstrapActions=None, SupportedProducts=None, NewSupportedProducts=None, Applications=None, Configurations=None, VisibleToAllUsers=None, JobFlowRole=None, ServiceRole=None, Tags=None, SecurityC...

def describe_batch_predictions(FilterVariable=None, EQ=None, GT=None, LT=None, GE=None, LE=None, NE=None, Prefix=None, SortOrder=None, NextToken=None, Limit=None): """ Returns a list of BatchPrediction operations that match the search criteria in the request. See also: AWS API Documentation :e...

def delete_item(TableName=None, Key=None, Expected=None, ConditionalOperator=None, ReturnValues=None, ReturnConsumedCapacity=None, ReturnItemCollectionMetrics=None, ConditionExpression=None, ExpressionAttributeNames=None, ExpressionAttributeValues=None): """ Deletes a single item in a table by primary key. You ...

def put_item(TableName=None, Item=None, Expected=None, ReturnValues=None, ReturnConsumedCapacity=None, ReturnItemCollectionMetrics=None, ConditionalOperator=None, ConditionExpression=None, ExpressionAttributeNames=None, ExpressionAttributeValues=None): """ Creates a new item, or replaces an old item with a new ...

def query(TableName=None, IndexName=None, Select=None, AttributesToGet=None, Limit=None, ConsistentRead=None, KeyConditions=None, QueryFilter=None, ConditionalOperator=None, ScanIndexForward=None, ExclusiveStartKey=None, ReturnConsumedCapacity=None, ProjectionExpression=None, FilterExpression=None, KeyConditionExpressi...

def scan(TableName=None, IndexName=None, AttributesToGet=None, Limit=None, Select=None, ScanFilter=None, ConditionalOperator=None, ExclusiveStartKey=None, ReturnConsumedCapacity=None, TotalSegments=None, Segment=None, ProjectionExpression=None, FilterExpression=None, ExpressionAttributeNames=None, ExpressionAttributeVa...

def update_item(TableName=None, Key=None, AttributeUpdates=None, Expected=None, ConditionalOperator=None, ReturnValues=None, ReturnConsumedCapacity=None, ReturnItemCollectionMetrics=None, UpdateExpression=None, ConditionExpression=None, ExpressionAttributeNames=None, ExpressionAttributeValues=None): """ Edits a...

def create_service(cluster=None, serviceName=None, taskDefinition=None, loadBalancers=None, desiredCount=None, clientToken=None, role=None, deploymentConfiguration=None, placementConstraints=None, placementStrategy=None): """ Runs and maintains a desired number of tasks from a specified task definition. If the ...

def register_domain(DomainName=None, IdnLangCode=None, DurationInYears=None, AutoRenew=None, AdminContact=None, RegistrantContact=None, TechContact=None, PrivacyProtectAdminContact=None, PrivacyProtectRegistrantContact=None, PrivacyProtectTechContact=None): """ This operation registers a domain. Domains are reg...

def transfer_domain(DomainName=None, IdnLangCode=None, DurationInYears=None, Nameservers=None, AuthCode=None, AutoRenew=None, AdminContact=None, RegistrantContact=None, TechContact=None, PrivacyProtectAdminContact=None, PrivacyProtectRegistrantContact=None, PrivacyProtectTechContact=None): """ This operation tr...

def simulate_custom_policy(PolicyInputList=None, ActionNames=None, ResourceArns=None, ResourcePolicy=None, ResourceOwner=None, CallerArn=None, ContextEntries=None, ResourceHandlingOption=None, MaxItems=None, Marker=None): """ Simulate how a set of IAM policies and optionally a resource-based policy works with a...

def simulate_principal_policy(PolicySourceArn=None, PolicyInputList=None, ActionNames=None, ResourceArns=None, ResourcePolicy=None, ResourceOwner=None, CallerArn=None, ContextEntries=None, ResourceHandlingOption=None, MaxItems=None, Marker=None): """ Simulate how a set of IAM policies attached to an IAM entity ...