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def get_line(self, text, on_unicode_error='strict'): """ Split a line of text into words and labels. Labels must start with the prefix used to create the model (__label__ by default). """ def check(entry): if entry.find('\n') != -1: raise ValueError( ...
def quantize( self, input=None, qout=False, cutoff=0, retrain=False, epoch=None, lr=None, thread=None, verbose=None, dsub=2, qnorm=False ): """ Quantize the model reducing the size of the model and it's m...
def forward(self, # pylint: disable=arguments-differ inputs: PackedSequence, initial_state: Optional[Tuple[torch.Tensor, torch.Tensor]] = None ) -> Tuple[PackedSequence, Tuple[torch.Tensor, torch.Tensor]]: """ Parameters ---------- inputs :...
def from_params(cls, params: Iterable[Tuple[str, Params]] = ()) -> Optional['RegularizerApplicator']: """ Converts a List of pairs (regex, params) into an RegularizerApplicator. This list should look like [["regex1", {"type": "l2", "alpha": 0.01}], ["regex2", "l1"]] where each ...
def list_available(cls) -> List[str]: """List default first if it exists""" keys = list(Registrable._registry[cls].keys()) default = cls.default_implementation if default is None: return keys elif default not in keys: message = "Default implementation %s ...
def sanitize(x: Any) -> Any: # pylint: disable=invalid-name,too-many-return-statements """ Sanitize turns PyTorch and Numpy types into basic Python types so they can be serialized into JSON. """ if isinstance(x, (str, float, int, bool)): # x is already serializable return x elif...
def group_by_count(iterable: List[Any], count: int, default_value: Any) -> List[List[Any]]: """ Takes a list and groups it into sublists of size ``count``, using ``default_value`` to pad the list at the end if the list is not divisable by ``count``. For example: >>> group_by_count([1, 2, 3, 4, 5, 6...
def lazy_groups_of(iterator: Iterator[A], group_size: int) -> Iterator[List[A]]: """ Takes an iterator and batches the individual instances into lists of the specified size. The last list may be smaller if there are instances left over. """ return iter(lambda: list(islice(iterator, 0, group_size)), ...
def pad_sequence_to_length(sequence: List, desired_length: int, default_value: Callable[[], Any] = lambda: 0, padding_on_right: bool = True) -> List: """ Take a list of objects and pads it to the desired length, returning the padde...
def add_noise_to_dict_values(dictionary: Dict[A, float], noise_param: float) -> Dict[A, float]: """ Returns a new dictionary with noise added to every key in ``dictionary``. The noise is uniformly distributed within ``noise_param`` percent of the value for every value in the dictionary. """ new...
def namespace_match(pattern: str, namespace: str): """ Matches a namespace pattern against a namespace string. For example, ``*tags`` matches ``passage_tags`` and ``question_tags`` and ``tokens`` matches ``tokens`` but not ``stemmed_tokens``. """ if pattern[0] == '*' and namespace.endswith(patt...
def prepare_environment(params: Params): """ Sets random seeds for reproducible experiments. This may not work as expected if you use this from within a python project in which you have already imported Pytorch. If you use the scripts/run_model.py entry point to training models with this library, yo...
def prepare_global_logging(serialization_dir: str, file_friendly_logging: bool) -> logging.FileHandler: """ This function configures 3 global logging attributes - streaming stdout and stderr to a file as well as the terminal, setting the formatting for the python logging library and setting the interval...
def cleanup_global_logging(stdout_handler: logging.FileHandler) -> None: """ This function closes any open file handles and logs set up by `prepare_global_logging`. Parameters ---------- stdout_handler : ``logging.FileHandler``, required. The file handler returned from `prepare_global_loggi...
def get_spacy_model(spacy_model_name: str, pos_tags: bool, parse: bool, ner: bool) -> SpacyModelType: """ In order to avoid loading spacy models a whole bunch of times, we'll save references to them, keyed by the options we used to create the spacy model, so any particular configuration only gets loaded...
def import_submodules(package_name: str) -> None: """ Import all submodules under the given package. Primarily useful so that people using AllenNLP as a library can specify their own custom packages and have their custom classes get loaded and registered. """ importlib.invalidate_caches() ...
def peak_memory_mb() -> float: """ Get peak memory usage for this process, as measured by max-resident-set size: https://unix.stackexchange.com/questions/30940/getrusage-system-call-what-is-maximum-resident-set-size Only works on OSX and Linux, returns 0.0 otherwise. """ if resource is Non...
def gpu_memory_mb() -> Dict[int, int]: """ Get the current GPU memory usage. Based on https://discuss.pytorch.org/t/access-gpu-memory-usage-in-pytorch/3192/4 Returns ------- ``Dict[int, int]`` Keys are device ids as integers. Values are memory usage as integers in MB. Re...
def ensure_list(iterable: Iterable[A]) -> List[A]: """ An Iterable may be a list or a generator. This ensures we get a list without making an unnecessary copy. """ if isinstance(iterable, list): return iterable else: return list(iterable)
def update(self, action: torch.Tensor) -> 'ChecklistStatelet': """ Takes an action index, updates checklist and returns an updated state. """ checklist_addition = (self.terminal_actions == action).float() new_checklist = self.checklist + checklist_addition new_checklist_s...
def _remove_action_from_type(valid_actions: Dict[str, List[str]], type_: str, filter_function: Callable[[str], bool]) -> None: """ Finds the production rule matching the filter function in the given type's valid action list, and r...
def forward(self, # pylint: disable=arguments-differ inputs: torch.FloatTensor, batch_lengths: List[int], initial_state: Optional[Tuple[torch.Tensor, torch.Tensor]] = None): """ Parameters ---------- inputs : ``torch.FloatTensor``, require...
def linkcode_resolve(domain, info): """ Determine the URL corresponding to Python object This code is from https://github.com/numpy/numpy/blob/master/doc/source/conf.py#L290 and https://github.com/Lasagne/Lasagne/pull/262 """ if domain != 'py': return None modname = info['module...
def _get_initial_rnn_and_grammar_state(self, question: Dict[str, torch.LongTensor], table: Dict[str, torch.LongTensor], world: List[WikiTablesWorld], ...
def _get_neighbor_indices(worlds: List[WikiTablesWorld], num_entities: int, tensor: torch.Tensor) -> torch.LongTensor: """ This method returns the indices of each entity's neighbors. A tensor is accepted as a parameter for copying purpo...
def _get_type_vector(worlds: List[WikiTablesWorld], num_entities: int, tensor: torch.Tensor) -> Tuple[torch.LongTensor, Dict[int, int]]: """ Produces a tensor with shape ``(batch_size, num_entities)`` that encodes each entity's type. In addition,...
def _get_linking_probabilities(self, worlds: List[WikiTablesWorld], linking_scores: torch.FloatTensor, question_mask: torch.LongTensor, entity_type_dict: Dict[int, int]) -> torch.F...
def get_metrics(self, reset: bool = False) -> Dict[str, float]: """ We track three metrics here: 1. dpd_acc, which is the percentage of the time that our best output action sequence is in the set of action sequences provided by DPD. This is an easy-to-compute lower bound ...
def _create_grammar_state(self, world: WikiTablesWorld, possible_actions: List[ProductionRule], linking_scores: torch.Tensor, entity_types: torch.Tensor) -> LambdaGrammarStatelet: """ ...
def _compute_validation_outputs(self, actions: List[List[ProductionRule]], best_final_states: Mapping[int, Sequence[GrammarBasedState]], world: List[WikiTablesWorld], example_l...
def decode(self, output_dict: Dict[str, torch.Tensor]) -> Dict[str, torch.Tensor]: """ This method overrides ``Model.decode``, which gets called after ``Model.forward``, at test time, to finalize predictions. This is (confusingly) a separate notion from the "decoder" in "encoder/decoder...
def _get_linked_logits_addition(checklist_state: ChecklistStatelet, action_ids: List[int], action_logits: torch.Tensor) -> torch.Tensor: """ Gets the logits of desired terminal actions yet to be produced by the decoder, and ...
def attend_on_question(self, query: torch.Tensor, encoder_outputs: torch.Tensor, encoder_output_mask: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]: """ Given a query (which is typically the decoder hidden state), comp...
def _walk(self) -> None: """ Walk over action space to collect completed paths of at most ``self._max_path_length`` steps. """ # Buffer of NTs to expand, previous actions incomplete_paths = [([str(type_)], [f"{START_SYMBOL} -> {type_}"]) for type_ in s...
def _check_types(self) -> None: """ Check that all the instances have the same types. """ all_instance_fields_and_types: List[Dict[str, str]] = [{k: v.__class__.__name__ for k, v in x.fields.items()} ...
def get_padding_lengths(self) -> Dict[str, Dict[str, int]]: """ Gets the maximum padding lengths from all ``Instances`` in this batch. Each ``Instance`` has multiple ``Fields``, and each ``Field`` could have multiple things that need padding. We look at all fields in all instances, and ...
def as_tensor_dict(self, padding_lengths: Dict[str, Dict[str, int]] = None, verbose: bool = False) -> Dict[str, Union[torch.Tensor, Dict[str, torch.Tensor]]]: # This complex return type is actually predefined elsewhere as a DataArray, # but we can't use it b...
def get_strings_from_utterance(tokenized_utterance: List[Token]) -> Dict[str, List[int]]: """ Based on the current utterance, return a dictionary where the keys are the strings in the database that map to lists of the token indices that they are linked to. """ string_linking_scores: Dict[str, List[i...
def _update_grammar(self): """ We create a new ``Grammar`` object from the one in ``AtisSqlTableContext``, that also has the new entities that are extracted from the utterance. Stitching together the expressions to form the grammar is a little tedious here, but it is worth it because we ...
def _update_expression_reference(self, # pylint: disable=no-self-use grammar: Grammar, parent_expression_nonterminal: str, child_expression_nonterminal: str) -> None: """ When we add a new expr...
def _get_sequence_with_spacing(self, # pylint: disable=no-self-use new_grammar, expressions: List[Expression], name: str = '') -> Sequence: """ This is a helper method for generating sequences, since...
def add_to_number_linking_scores(self, all_numbers: Set[str], number_linking_scores: Dict[str, Tuple[str, str, List[int]]], get_number_linking_dict: Callable[[str, List[Token]], ...
def _get_linked_entities(self) -> Dict[str, Dict[str, Tuple[str, str, List[int]]]]: """ This method gets entities from the current utterance finds which tokens they are linked to. The entities are divided into two main groups, ``numbers`` and ``strings``. We rely on these entities later ...
def all_possible_actions(self) -> List[str]: """ Return a sorted list of strings representing all possible actions of the form: nonterminal -> [right_hand_side] """ all_actions = set() for _, action_list in self.valid_actions.items(): for action in action_list...
def _flatten_entities(self) -> Tuple[List[str], numpy.ndarray]: """ When we first get the entities and the linking scores in ``_get_linked_entities`` we represent as dictionaries for easier updates to the grammar and valid actions. In this method, we flatten them for the model so that th...
def make_app(include_packages: Sequence[str] = ()) -> Flask: """ Creates a Flask app that serves up a simple configuration wizard. """ # Load modules for package_name in include_packages: import_submodules(package_name) app = Flask(__name__) # pylint: disable=invalid-name @app.err...
def train_model_from_args(args: argparse.Namespace): """ Just converts from an ``argparse.Namespace`` object to string paths. """ train_model_from_file(args.param_path, args.serialization_dir, args.overrides, args.file_friendl...
def train_model_from_file(parameter_filename: str, serialization_dir: str, overrides: str = "", file_friendly_logging: bool = False, recover: bool = False, force: bool = False, ...
def train_model(params: Params, serialization_dir: str, file_friendly_logging: bool = False, recover: bool = False, force: bool = False, cache_directory: str = None, cache_prefix: str = None) -> Model: """ Trains the...
def _prf_divide(numerator, denominator): """Performs division and handles divide-by-zero. On zero-division, sets the corresponding result elements to zero. """ result = numerator / denominator mask = denominator == 0.0 if not mask.any(): return result # remove nan result[mask] ...
def load_data(file_path: str) -> Tuple[List[str], List[str]]: """ One sentence per line, formatted like The###DET dog###NN ate###V the###DET apple###NN Returns a list of pairs (tokenized_sentence, tags) """ data = [] with open(file_path) as f: for line in f: pairs ...
def pop_max_vocab_size(params: Params) -> Union[int, Dict[str, int]]: """ max_vocab_size limits the size of the vocabulary, not including the @@UNKNOWN@@ token. max_vocab_size is allowed to be either an int or a Dict[str, int] (or nothing). But it could also be a string representing an int (in the case...
def save_to_files(self, directory: str) -> None: """ Persist this Vocabulary to files so it can be reloaded later. Each namespace corresponds to one file. Parameters ---------- directory : ``str`` The directory where we save the serialized vocabulary. ...
def from_files(cls, directory: str) -> 'Vocabulary': """ Loads a ``Vocabulary`` that was serialized using ``save_to_files``. Parameters ---------- directory : ``str`` The directory containing the serialized vocabulary. """ logger.info("Loading token d...
def set_from_file(self, filename: str, is_padded: bool = True, oov_token: str = DEFAULT_OOV_TOKEN, namespace: str = "tokens"): """ If you already have a vocabulary file for a trained model somewhere, and you really w...
def from_instances(cls, instances: Iterable['adi.Instance'], min_count: Dict[str, int] = None, max_vocab_size: Union[int, Dict[str, int]] = None, non_padded_namespaces: Iterable[str] = DEFAULT_NON_PADDED_NAMESPACES, ...
def from_params(cls, params: Params, instances: Iterable['adi.Instance'] = None): # type: ignore """ There are two possible ways to build a vocabulary; from a collection of instances, using :func:`Vocabulary.from_instances`, or from a pre-saved vocabulary, using :func:`Vocabulary.from_f...
def _extend(self, counter: Dict[str, Dict[str, int]] = None, min_count: Dict[str, int] = None, max_vocab_size: Union[int, Dict[str, int]] = None, non_padded_namespaces: Iterable[str] = DEFAULT_NON_PADDED_NAMESPACES, pretrained_files: Option...
def extend_from_instances(self, params: Params, instances: Iterable['adi.Instance'] = ()) -> None: """ Extends an already generated vocabulary using a collection of instances. """ min_count = params.pop("min_count", None) ...
def is_padded(self, namespace: str) -> bool: """ Returns whether or not there are padding and OOV tokens added to the given namespace. """ return self._index_to_token[namespace][0] == self._padding_token
def add_token_to_namespace(self, token: str, namespace: str = 'tokens') -> int: """ Adds ``token`` to the index, if it is not already present. Either way, we return the index of the token. """ if not isinstance(token, str): raise ValueError("Vocabulary tokens must be...
def get_regularization_penalty(self) -> Union[float, torch.Tensor]: """ Computes the regularization penalty for the model. Returns 0 if the model was not configured to use regularization. """ if self._regularizer is None: return 0.0 else: return se...
def forward_on_instance(self, instance: Instance) -> Dict[str, numpy.ndarray]: """ Takes an :class:`~allennlp.data.instance.Instance`, which typically has raw text in it, converts that text into arrays using this model's :class:`Vocabulary`, passes those arrays through :func:`self.forwar...
def forward_on_instances(self, instances: List[Instance]) -> List[Dict[str, numpy.ndarray]]: """ Takes a list of :class:`~allennlp.data.instance.Instance`s, converts that text into arrays using this model's :class:`Vocabulary`, passes those arrays through :f...
def decode(self, output_dict: Dict[str, torch.Tensor]) -> Dict[str, torch.Tensor]: """ Takes the result of :func:`forward` and runs inference / decoding / whatever post-processing you need to do your model. The intent is that ``model.forward()`` should produce potentials or probabilitie...
def _get_prediction_device(self) -> int: """ This method checks the device of the model parameters to determine the cuda_device this model should be run on for predictions. If there are no parameters, it returns -1. Returns ------- The cuda device this model should run ...
def _maybe_warn_for_unseparable_batches(self, output_key: str): """ This method warns once if a user implements a model which returns a dictionary with values which we are unable to split back up into elements of the batch. This is controlled by a class attribute ``_warn_for_unseperable_...
def _load(cls, config: Params, serialization_dir: str, weights_file: str = None, cuda_device: int = -1) -> 'Model': """ Instantiates an already-trained model, based on the experiment configuration and some optional overrides. """ ...
def load(cls, config: Params, serialization_dir: str, weights_file: str = None, cuda_device: int = -1) -> 'Model': """ Instantiates an already-trained model, based on the experiment configuration and some optional overrides. Parameters...
def extend_embedder_vocab(self, embedding_sources_mapping: Dict[str, str] = None) -> None: """ Iterates through all embedding modules in the model and assures it can embed with the extended vocab. This is required in fine-tuning or transfer learning scenarios where model was trained with...
def get_agenda(self, conservative: bool = False): """ Returns an agenda that can be used guide search. Parameters ---------- conservative : ``bool`` Setting this flag will return a subset of the agenda items that correspond to high conf...
def evaluate_logical_form(self, logical_form: str, target_list: List[str]) -> bool: """ Takes a logical form, and the list of target values as strings from the original lisp string, and returns True iff the logical form executes to the target list, using the official WikiTableQuestions e...
def select_string(self, rows: List[Row], column: StringColumn) -> List[str]: """ Select function takes a list of rows and a column name and returns a list of strings as in cells. """ return [str(row.values[column.name]) for row in rows if row.values[column.name] is not None]
def select_number(self, rows: List[Row], column: NumberColumn) -> Number: """ Select function takes a row (as a list) and a column name and returns the number in that column. If multiple rows are given, will return the first number that is not None. """ numbers: List[float] = [] ...
def select_date(self, rows: List[Row], column: DateColumn) -> Date: """ Select function takes a row as a list and a column name and returns the date in that column. """ dates: List[Date] = [] for row in rows: cell_value = row.values[column.name] if isinsta...
def same_as(self, rows: List[Row], column: Column) -> List[Row]: """ Takes a row and a column and returns a list of rows from the full set of rows that contain the same value under the given column as the given row. """ cell_value = rows[0].values[column.name] return_list...
def date(self, year: Number, month: Number, day: Number) -> Date: """ Takes three numbers and returns a ``Date`` object whose year, month, and day are the three numbers in that order. """ return Date(year, month, day)
def first(self, rows: List[Row]) -> List[Row]: """ Takes an expression that evaluates to a list of rows, and returns the first one in that list. """ if not rows: logger.warning("Trying to get first row from an empty list") return [] return [rows[0]...
def last(self, rows: List[Row]) -> List[Row]: """ Takes an expression that evaluates to a list of rows, and returns the last one in that list. """ if not rows: logger.warning("Trying to get last row from an empty list") return [] return [rows[-1]]
def previous(self, rows: List[Row]) -> List[Row]: """ Takes an expression that evaluates to a single row, and returns the row that occurs before the input row in the original set of rows. If the input row happens to be the top row, we will return an empty list. """ if not...
def next(self, rows: List[Row]) -> List[Row]: """ Takes an expression that evaluates to a single row, and returns the row that occurs after the input row in the original set of rows. If the input row happens to be the last row, we will return an empty list. """ if not row...
def mode_string(self, rows: List[Row], column: StringColumn) -> List[str]: """ Takes a list of rows and a column and returns the most frequent values (one or more) under that column in those rows. """ most_frequent_list = self._get_most_frequent_values(rows, column) if no...
def mode_number(self, rows: List[Row], column: NumberColumn) -> Number: """ Takes a list of rows and a column and returns the most frequent value under that column in those rows. """ most_frequent_list = self._get_most_frequent_values(rows, column) if not most_frequent_li...
def mode_date(self, rows: List[Row], column: DateColumn) -> Date: """ Takes a list of rows and a column and returns the most frequent value under that column in those rows. """ most_frequent_list = self._get_most_frequent_values(rows, column) if not most_frequent_list: ...
def argmax(self, rows: List[Row], column: ComparableColumn) -> List[Row]: """ Takes a list of rows and a column name and returns a list containing a single row (dict from columns to cells) that has the maximum numerical value in the given column. We return a list instead of a single dict...
def argmin(self, rows: List[Row], column: ComparableColumn) -> List[Row]: """ Takes a list of rows and a column and returns a list containing a single row (dict from columns to cells) that has the minimum numerical value in the given column. We return a list instead of a single dict to b...
def max_date(self, rows: List[Row], column: DateColumn) -> Date: """ Takes a list of rows and a column and returns the max of the values under that column in those rows. """ cell_values = [row.values[column.name] for row in rows] if not cell_values: return Dat...
def max_number(self, rows: List[Row], column: NumberColumn) -> Number: """ Takes a list of rows and a column and returns the max of the values under that column in those rows. """ cell_values = [row.values[column.name] for row in rows] if not cell_values: retu...
def average(self, rows: List[Row], column: NumberColumn) -> Number: """ Takes a list of rows and a column and returns the mean of the values under that column in those rows. """ cell_values = [row.values[column.name] for row in rows] if not cell_values: return...
def diff(self, first_row: List[Row], second_row: List[Row], column: NumberColumn) -> Number: """ Takes a two rows and a number column and returns the difference between the values under that column in those two rows. """ if not first_row or not second_row: return 0.0 ...
def _get_row_index(self, row: Row) -> int: """ Takes a row and returns its index in the full list of rows. If the row does not occur in the table (which should never happen because this function will only be called with a row that is the result of applying one or more functions on the ta...
def is_terminal(self, symbol: str) -> bool: """ This function will be called on nodes of a logical form tree, which are either non-terminal symbols that can be expanded or terminal symbols that must be leaf nodes. Returns ``True`` if the given symbol is a terminal symbol. """ ...
def get_paths_to_root(self, action: str, max_path_length: int = 20, beam_size: int = 30, max_num_paths: int = 10) -> List[List[str]]: """ For a given action, returns at most ``max_num_paths`` paths to...
def get_multi_match_mapping(self) -> Dict[Type, List[Type]]: """ Returns a mapping from each `MultiMatchNamedBasicType` to all the `NamedBasicTypes` that it matches. """ if self._multi_match_mapping is None: self._multi_match_mapping = {} basic_types = sel...
def parse_logical_form(self, logical_form: str, remove_var_function: bool = True) -> Expression: """ Takes a logical form as a string, maps its tokens using the mapping and returns a parsed expression. Parameters ---------- l...
def get_action_sequence(self, expression: Expression) -> List[str]: """ Returns the sequence of actions (as strings) that resulted in the given expression. """ # Starting with the type of the whole expression return self._get_transitions(expression, ...
def get_logical_form(self, action_sequence: List[str], add_var_function: bool = True) -> str: """ Takes an action sequence and constructs a logical form from it. This is useful if you want to get a logical form from a decoded sequence of actions ...
def _construct_node_from_actions(self, current_node: Tree, remaining_actions: List[List[str]], add_var_function: bool) -> List[List[str]]: """ Given a current node in the logical form tree, and...
def _infer_num_arguments(cls, type_signature: str) -> int: """ Takes a type signature and infers the number of arguments the corresponding function takes. Examples: e -> 0 <r,e> -> 1 <e,<e,t>> -> 2 <b,<<b,#1>,<#1,b>>> -> 3 """ if no...
def _process_nested_expression(self, nested_expression) -> str: """ ``nested_expression`` is the result of parsing a logical form in Lisp format. We process it recursively and return a string in the format that NLTK's ``LogicParser`` would understand. """ expression_is_li...