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def _add_name_mapping(self, name: str, translated_name: str, name_type: Type = None): """ Utility method to add a name and its translation to the local name mapping, and the corresponding signature, if available to the local type signatures. This method also updates the reverse name mapp...
def forward(self, # pylint: disable=arguments-differ inputs: PackedSequence, initial_state: Optional[Tuple[torch.Tensor, torch.Tensor]] = None): """ Parameters ---------- inputs : PackedSequence, required. A tensor of shape (batch_size, num_ti...
def _create_sempre_executor(self) -> None: """ Creates a server running SEMPRE that we can send logical forms to for evaluation. This uses inter-process communication, because SEMPRE is java code. We also need to be careful to clean up the process when our program exits. """ ...
def b_cubed(clusters, mention_to_gold): """ Averaged per-mention precision and recall. <https://pdfs.semanticscholar.org/cfe3/c24695f1c14b78a5b8e95bcbd1c666140fd1.pdf> """ numerator, denominator = 0, 0 for cluster in clusters: if len(cluster) == 1: ...
def muc(clusters, mention_to_gold): """ Counts the mentions in each predicted cluster which need to be re-allocated in order for each predicted cluster to be contained by the respective gold cluster. <http://aclweb.org/anthology/M/M95/M95-1005.pdf> """ true_p, all_p = 0, ...
def phi4(gold_clustering, predicted_clustering): """ Subroutine for ceafe. Computes the mention F measure between gold and predicted mentions in a cluster. """ return 2 * len([mention for mention in gold_clustering if mention in predicted_clustering]) \ / float(len...
def ceafe(clusters, gold_clusters): """ Computes the Constrained EntityAlignment F-Measure (CEAF) for evaluating coreference. Gold and predicted mentions are aligned into clusterings which maximise a metric - in this case, the F measure between gold and predicted clusters. <htt...
def take_action(self, production_rule: str) -> 'GrammarStatelet': """ Takes an action in the current grammar state, returning a new grammar state with whatever updates are necessary. The production rule is assumed to be formatted as "LHS -> RHS". This will update the non-terminal stack...
def sparse_clip_norm(parameters, max_norm, norm_type=2) -> float: """Clips gradient norm of an iterable of parameters. The norm is computed over all gradients together, as if they were concatenated into a single vector. Gradients are modified in-place. Supports sparse gradients. Parameters ---...
def move_optimizer_to_cuda(optimizer): """ Move the optimizer state to GPU, if necessary. After calling, any parameter specific state in the optimizer will be located on the same device as the parameter. """ for param_group in optimizer.param_groups: for param in param_group['params']: ...
def get_batch_size(batch: Union[Dict, torch.Tensor]) -> int: """ Returns the size of the batch dimension. Assumes a well-formed batch, returns 0 otherwise. """ if isinstance(batch, torch.Tensor): return batch.size(0) # type: ignore elif isinstance(batch, Dict): return get_batch_s...
def time_to_str(timestamp: int) -> str: """ Convert seconds past Epoch to human readable string. """ datetimestamp = datetime.datetime.fromtimestamp(timestamp) return '{:04d}-{:02d}-{:02d}-{:02d}-{:02d}-{:02d}'.format( datetimestamp.year, datetimestamp.month, datetimestamp.day, ...
def str_to_time(time_str: str) -> datetime.datetime: """ Convert human readable string to datetime.datetime. """ pieces: Any = [int(piece) for piece in time_str.split('-')] return datetime.datetime(*pieces)
def datasets_from_params(params: Params, cache_directory: str = None, cache_prefix: str = None) -> Dict[str, Iterable[Instance]]: """ Load all the datasets specified by the config. Parameters ---------- params : ``Params`` cache_directory : ``st...
def create_serialization_dir( params: Params, serialization_dir: str, recover: bool, force: bool) -> None: """ This function creates the serialization directory if it doesn't exist. If it already exists and is non-empty, then it verifies that we're recovering from a training...
def data_parallel(batch_group: List[TensorDict], model: Model, cuda_devices: List) -> Dict[str, torch.Tensor]: """ Performs a forward pass using multiple GPUs. This is a simplification of torch.nn.parallel.data_parallel to support the allennlp model interface. ""...
def rescale_gradients(model: Model, grad_norm: Optional[float] = None) -> Optional[float]: """ Performs gradient rescaling. Is a no-op if gradient rescaling is not enabled. """ if grad_norm: parameters_to_clip = [p for p in model.parameters() if p.grad is not None] ...
def get_metrics(model: Model, total_loss: float, num_batches: int, reset: bool = False) -> Dict[str, float]: """ Gets the metrics but sets ``"loss"`` to the total loss divided by the ``num_batches`` so that the ``"loss"`` metric is "average loss per batch". """ metrics = model.get_metrics(reset=...
def parse_requirements() -> Tuple[PackagesType, PackagesType, Set[str]]: """Parse all dependencies out of the requirements.txt file.""" essential_packages: PackagesType = {} other_packages: PackagesType = {} duplicates: Set[str] = set() with open("requirements.txt", "r") as req_file: section...
def parse_setup() -> Tuple[PackagesType, PackagesType, Set[str], Set[str]]: """Parse all dependencies out of the setup.py script.""" essential_packages: PackagesType = {} test_packages: PackagesType = {} essential_duplicates: Set[str] = set() test_duplicates: Set[str] = set() with open('setup.p...
def enumerate_spans(sentence: List[T], offset: int = 0, max_span_width: int = None, min_span_width: int = 1, filter_function: Callable[[List[T]], bool] = None) -> List[Tuple[int, int]]: """ Given a sentence, return all token spans w...
def bio_tags_to_spans(tag_sequence: List[str], classes_to_ignore: List[str] = None) -> List[TypedStringSpan]: """ Given a sequence corresponding to BIO tags, extracts spans. Spans are inclusive and can be of zero length, representing a single word span. Ill-formed spans are also in...
def iob1_tags_to_spans(tag_sequence: List[str], classes_to_ignore: List[str] = None) -> List[TypedStringSpan]: """ Given a sequence corresponding to IOB1 tags, extracts spans. Spans are inclusive and can be of zero length, representing a single word span. Ill-formed spans are also...
def bioul_tags_to_spans(tag_sequence: List[str], classes_to_ignore: List[str] = None) -> List[TypedStringSpan]: """ Given a sequence corresponding to BIOUL tags, extracts spans. Spans are inclusive and can be of zero length, representing a single word span. Ill-formed spans are n...
def to_bioul(tag_sequence: List[str], encoding: str = "IOB1") -> List[str]: """ Given a tag sequence encoded with IOB1 labels, recode to BIOUL. In the IOB1 scheme, I is a token inside a span, O is a token outside a span and B is the beginning of span immediately following another span of the same t...
def bmes_tags_to_spans(tag_sequence: List[str], classes_to_ignore: List[str] = None) -> List[TypedStringSpan]: """ Given a sequence corresponding to BMES tags, extracts spans. Spans are inclusive and can be of zero length, representing a single word span. Ill-formed spans are also...
def dry_run_from_args(args: argparse.Namespace): """ Just converts from an ``argparse.Namespace`` object to params. """ parameter_path = args.param_path serialization_dir = args.serialization_dir overrides = args.overrides params = Params.from_file(parameter_path, overrides) dry_run_fr...
def search(self, initial_state: State, transition_function: TransitionFunction) -> Dict[int, List[State]]: """ Parameters ---------- initial_state : ``State`` The starting state of our search. This is assumed to be `batched`, and our beam search...
def url_ok(match_tuple: MatchTuple) -> bool: """Check if a URL is reachable.""" try: result = requests.get(match_tuple.link, timeout=5) return result.ok except (requests.ConnectionError, requests.Timeout): return False
def path_ok(match_tuple: MatchTuple) -> bool: """Check if a file in this repository exists.""" relative_path = match_tuple.link.split("#")[0] full_path = os.path.join(os.path.dirname(str(match_tuple.source)), relative_path) return os.path.exists(full_path)
def infer_and_cast(value: Any): """ In some cases we'll be feeding params dicts to functions we don't own; for example, PyTorch optimizers. In that case we can't use ``pop_int`` or similar to force casts (which means you can't specify ``int`` parameters using environment variables). This function ta...
def _environment_variables() -> Dict[str, str]: """ Wraps `os.environ` to filter out non-encodable values. """ return {key: value for key, value in os.environ.items() if _is_encodable(value)}
def unflatten(flat_dict: Dict[str, Any]) -> Dict[str, Any]: """ Given a "flattened" dict with compound keys, e.g. {"a.b": 0} unflatten it: {"a": {"b": 0}} """ unflat: Dict[str, Any] = {} for compound_key, value in flat_dict.items(): curr_dict = unflat parts = com...
def with_fallback(preferred: Dict[str, Any], fallback: Dict[str, Any]) -> Dict[str, Any]: """ Deep merge two dicts, preferring values from `preferred`. """ def merge(preferred_value: Any, fallback_value: Any) -> Any: if isinstance(preferred_value, dict) and isinstance(fallback_value, dict): ...
def pop_choice(params: Dict[str, Any], key: str, choices: List[Any], default_to_first_choice: bool = False, history: str = "?.") -> Any: """ Performs the same function as :func:`Params.pop_choice`, but is required in order to deal with places that ...
def add_file_to_archive(self, name: str) -> None: """ Any class in its ``from_params`` method can request that some of its input files be added to the archive by calling this method. For example, if some class ``A`` had an ``input_file`` parameter, it could call ``` par...
def pop(self, key: str, default: Any = DEFAULT) -> Any: """ Performs the functionality associated with dict.pop(key), along with checking for returned dictionaries, replacing them with Param objects with an updated history. If ``key`` is not present in the dictionary, and no default was...
def pop_int(self, key: str, default: Any = DEFAULT) -> int: """ Performs a pop and coerces to an int. """ value = self.pop(key, default) if value is None: return None else: return int(value)
def pop_float(self, key: str, default: Any = DEFAULT) -> float: """ Performs a pop and coerces to a float. """ value = self.pop(key, default) if value is None: return None else: return float(value)
def pop_bool(self, key: str, default: Any = DEFAULT) -> bool: """ Performs a pop and coerces to a bool. """ value = self.pop(key, default) if value is None: return None elif isinstance(value, bool): return value elif value == "true": ...
def get(self, key: str, default: Any = DEFAULT): """ Performs the functionality associated with dict.get(key) but also checks for returned dicts and returns a Params object in their place with an updated history. """ if default is self.DEFAULT: try: va...
def pop_choice(self, key: str, choices: List[Any], default_to_first_choice: bool = False) -> Any: """ Gets the value of ``key`` in the ``params`` dictionary, ensuring that the value is one of the given choices. Note that this `pops` the key from params, modifying the dictionary, consiste...
def as_dict(self, quiet: bool = False, infer_type_and_cast: bool = False): """ Sometimes we need to just represent the parameters as a dict, for instance when we pass them to PyTorch code. Parameters ---------- quiet: bool, optional (default = False) Whether ...
def as_flat_dict(self): """ Returns the parameters of a flat dictionary from keys to values. Nested structure is collapsed with periods. """ flat_params = {} def recurse(parameters, path): for key, value in parameters.items(): newpath = path + ...
def assert_empty(self, class_name: str): """ Raises a ``ConfigurationError`` if ``self.params`` is not empty. We take ``class_name`` as an argument so that the error message gives some idea of where an error happened, if there was one. ``class_name`` should be the name of the `calling`...
def from_file(params_file: str, params_overrides: str = "", ext_vars: dict = None) -> 'Params': """ Load a `Params` object from a configuration file. Parameters ---------- params_file : ``str`` The path to the configuration file to load. params_overrides : ``...
def as_ordered_dict(self, preference_orders: List[List[str]] = None) -> OrderedDict: """ Returns Ordered Dict of Params from list of partial order preferences. Parameters ---------- preference_orders: List[List[str]], optional ``preference_orders`` is list of partial...
def get_hash(self) -> str: """ Returns a hash code representing the current state of this ``Params`` object. We don't want to implement ``__hash__`` because that has deeper python implications (and this is a mutable object), but this will give you a representation of the current state. ...
def clear(self) -> None: """ Clears out the tracked metrics, but keeps the patience and should_decrease settings. """ self._best_so_far = None self._epochs_with_no_improvement = 0 self._is_best_so_far = True self._epoch_number = 0 self.best_epoch = None
def state_dict(self) -> Dict[str, Any]: """ A ``Trainer`` can use this to serialize the state of the metric tracker. """ return { "best_so_far": self._best_so_far, "patience": self._patience, "epochs_with_no_improvement": self._epochs_with_...
def add_metric(self, metric: float) -> None: """ Record a new value of the metric and update the various things that depend on it. """ new_best = ((self._best_so_far is None) or (self._should_decrease and metric < self._best_so_far) or (not self._s...
def add_metrics(self, metrics: Iterable[float]) -> None: """ Helper to add multiple metrics at once. """ for metric in metrics: self.add_metric(metric)
def should_stop_early(self) -> bool: """ Returns true if improvement has stopped for long enough. """ if self._patience is None: return False else: return self._epochs_with_no_improvement >= self._patience
def archive_model(serialization_dir: str, weights: str = _DEFAULT_WEIGHTS, files_to_archive: Dict[str, str] = None, archive_path: str = None) -> None: """ Archive the model weights, its training configuration, and its vocabulary to `model.tar.gz`. Includ...
def load_archive(archive_file: str, cuda_device: int = -1, overrides: str = "", weights_file: str = None) -> Archive: """ Instantiates an Archive from an archived `tar.gz` file. Parameters ---------- archive_file: ``str`` The archive file t...
def extract_module(self, path: str, freeze: bool = True) -> Module: """ This method can be used to load a module from the pretrained model archive. It is also used implicitly in FromParams based construction. So instead of using standard params to construct a module, you can instead loa...
def _get_action_strings(cls, possible_actions: List[List[ProductionRule]], action_indices: Dict[int, List[List[int]]]) -> List[List[List[str]]]: """ Takes a list of possible actions and indices of decoded actions into those possible actions ...
def decode(self, output_dict: Dict[str, torch.Tensor]) -> Dict[str, torch.Tensor]: """ This method overrides ``Model.decode``, which gets called after ``Model.forward``, at test time, to finalize predictions. We only transform the action string sequences into logical forms here. ...
def _check_state_denotations(self, state: GrammarBasedState, worlds: List[NlvrLanguage]) -> List[bool]: """ Returns whether action history in the state evaluates to the correct denotations over all worlds. Only defined when the state is finished. """ assert state.is_finished(), "...
def find_learning_rate_from_args(args: argparse.Namespace) -> None: """ Start learning rate finder for given args """ params = Params.from_file(args.param_path, args.overrides) find_learning_rate_model(params, args.serialization_dir, start_lr=args.start_lr, ...
def find_learning_rate_model(params: Params, serialization_dir: str, start_lr: float = 1e-5, end_lr: float = 10, num_batches: int = 100, linear_steps: bool = False, stopping_f...
def search_learning_rate(trainer: Trainer, start_lr: float = 1e-5, end_lr: float = 10, num_batches: int = 100, linear_steps: bool = False, stopping_factor: float = None) -> Tuple[List[float], Lis...
def _smooth(values: List[float], beta: float) -> List[float]: """ Exponential smoothing of values """ avg_value = 0. smoothed = [] for i, value in enumerate(values): avg_value = beta * avg_value + (1 - beta) * value smoothed.append(avg_value / (1 - beta ** (i + 1))) return smoothed
def forward(self, tensors: List[torch.Tensor], # pylint: disable=arguments-differ mask: torch.Tensor = None) -> torch.Tensor: """ Compute a weighted average of the ``tensors``. The input tensors an be any shape with at least two dimensions, but must all be the same shape. ...
def predicate_with_side_args(side_arguments: List[str]) -> Callable: # pylint: disable=invalid-name """ Like :func:`predicate`, but used when some of the arguments to the function are meant to be provided by the decoder or other state, instead of from the language. For example, you might want to have ...
def nltk_tree_to_logical_form(tree: Tree) -> str: """ Given an ``nltk.Tree`` representing the syntax tree that generates a logical form, this method produces the actual (lisp-like) logical form, with all of the non-terminal symbols converted into the correct number of parentheses. This is used in t...
def get_type(type_: Type) -> 'PredicateType': """ Converts a python ``Type`` (as you might get from a type annotation) into a ``PredicateType``. If the ``Type`` is callable, this will return a ``FunctionType``; otherwise, it will return a ``BasicType``. ``BasicTypes`` have a si...
def execute(self, logical_form: str): """Executes a logical form, using whatever predicates you have defined.""" if not hasattr(self, '_functions'): raise RuntimeError("You must call super().__init__() in your Language constructor") logical_form = logical_form.replace(",", " ") ...
def execute_action_sequence(self, action_sequence: List[str], side_arguments: List[Dict] = None): """ Executes the program defined by an action sequence directly, without needing the overhead of translating to a logical form first. For any given program, :func:`execute` and this functio...
def get_nonterminal_productions(self) -> Dict[str, List[str]]: """ Induces a grammar from the defined collection of predicates in this language and returns all productions in that grammar, keyed by the non-terminal they are expanding. This includes terminal productions implied by each p...
def all_possible_productions(self) -> List[str]: """ Returns a sorted list of all production rules in the grammar induced by :func:`get_nonterminal_productions`. """ all_actions = set() for action_set in self.get_nonterminal_productions().values(): all_actions...
def logical_form_to_action_sequence(self, logical_form: str) -> List[str]: """ Converts a logical form into a linearization of the production rules from its abstract syntax tree. The linearization is top-down, depth-first. Each production rule is formatted as "LHS -> RHS", where "LHS" ...
def action_sequence_to_logical_form(self, action_sequence: List[str]) -> str: """ Takes an action sequence as produced by :func:`logical_form_to_action_sequence`, which is a linearization of an abstract syntax tree, and reconstructs the logical form defined by that abstract syntax tree. ...
def add_predicate(self, name: str, function: Callable, side_arguments: List[str] = None): """ Adds a predicate to this domain language. Typically you do this with the ``@predicate`` decorator on the methods in your class. But, if you need to for whatever reason, you can also call this ...
def add_constant(self, name: str, value: Any, type_: Type = None): """ Adds a constant to this domain language. You would typically just pass in a list of constants to the ``super().__init__()`` call in your constructor, but you can also call this method to add constants if it is more c...
def is_nonterminal(self, symbol: str) -> bool: """ Determines whether an input symbol is a valid non-terminal in the grammar. """ nonterminal_productions = self.get_nonterminal_productions() return symbol in nonterminal_productions
def _execute_expression(self, expression: Any): """ This does the bulk of the work of executing a logical form, recursively executing a single expression. Basically, if the expression is a function we know about, we evaluate its arguments then call the function. If it's a list, we eval...
def _execute_sequence(self, action_sequence: List[str], side_arguments: List[Dict]) -> Tuple[Any, List[str], List[Dict]]: """ This does the bulk of the work of :func:`execute_action_sequence`, recursively executing the functions it finds and tr...
def _get_transitions(self, expression: Any, expected_type: PredicateType) -> Tuple[List[str], PredicateType]: """ This is used when converting a logical form into an action sequence. This piece recursively translates a lisp expression into an action sequence, making sure we match the ex...
def _get_function_transitions(self, expression: Union[str, List], expected_type: PredicateType) -> Tuple[List[str], PredicateType, ...
def _construct_node_from_actions(self, current_node: Tree, remaining_actions: List[List[str]]) -> List[List[str]]: """ Given a current node in the logical form tree, and a list of actions in an action sequence, this method...
def _choice(num_words: int, num_samples: int) -> Tuple[np.ndarray, int]: """ Chooses ``num_samples`` samples without replacement from [0, ..., num_words). Returns a tuple (samples, num_tries). """ num_tries = 0 num_chosen = 0 def get_buffer() -> np.ndarray: log_samples = np.random.r...
def tokens_to_indices(self, tokens: List[Token], vocabulary: Vocabulary, index_name: str) -> Dict[str, List[TokenType]]: """ Takes a list of tokens and converts them to one or more sets of indices. This could be just a...
def pad_token_sequence(self, tokens: Dict[str, List[TokenType]], desired_num_tokens: Dict[str, int], padding_lengths: Dict[str, int]) -> Dict[str, List[TokenType]]: """ This method pads a list of tokens to ``desired_num_tok...
def canonicalize_clusters(clusters: DefaultDict[int, List[Tuple[int, int]]]) -> List[List[Tuple[int, int]]]: """ The CONLL 2012 data includes 2 annotated spans which are identical, but have different ids. This checks all clusters for spans which are identical, and if it finds any, merges the clusters co...
def join_mwp(tags: List[str]) -> List[str]: """ Join multi-word predicates to a single predicate ('V') token. """ ret = [] verb_flag = False for tag in tags: if "V" in tag: # Create a continuous 'V' BIO span prefix, _ = tag.split("-") if verb_flag:...
def make_oie_string(tokens: List[Token], tags: List[str]) -> str: """ Converts a list of model outputs (i.e., a list of lists of bio tags, each pertaining to a single word), returns an inline bracket representation of the prediction. """ frame = [] chunk = [] words = [token.text for toke...
def get_predicate_indices(tags: List[str]) -> List[int]: """ Return the word indices of a predicate in BIO tags. """ return [ind for ind, tag in enumerate(tags) if 'V' in tag]
def get_predicate_text(sent_tokens: List[Token], tags: List[str]) -> str: """ Get the predicate in this prediction. """ return " ".join([sent_tokens[pred_id].text for pred_id in get_predicate_indices(tags)])
def predicates_overlap(tags1: List[str], tags2: List[str]) -> bool: """ Tests whether the predicate in BIO tags1 overlap with those of tags2. """ # Get predicate word indices from both predictions pred_ind1 = get_predicate_indices(tags1) pred_ind2 = get_predicate_indices(tags2) # Return...
def get_coherent_next_tag(prev_label: str, cur_label: str) -> str: """ Generate a coherent tag, given previous tag and current label. """ if cur_label == "O": # Don't need to add prefix to an "O" label return "O" if prev_label == cur_label: return f"I-{cur_label}" else: ...
def merge_overlapping_predictions(tags1: List[str], tags2: List[str]) -> List[str]: """ Merge two predictions into one. Assumes the predicate in tags1 overlap with the predicate of tags2. """ ret_sequence = [] prev_label = "O" # Build a coherent sequence out of two # spans which predica...
def consolidate_predictions(outputs: List[List[str]], sent_tokens: List[Token]) -> Dict[str, List[str]]: """ Identify that certain predicates are part of a multiword predicate (e.g., "decided to run") in which case, we don't need to return the embedded predicate ("run"). """ pred_dict: Dict[str,...
def sanitize_label(label: str) -> str: """ Sanitize a BIO label - this deals with OIE labels sometimes having some noise, as parentheses. """ if "-" in label: prefix, suffix = label.split("-") suffix = suffix.split("(")[-1] return f"{prefix}-{suffix}" else: return...
def batch_to_ids(batch: List[List[str]]) -> torch.Tensor: """ Converts a batch of tokenized sentences to a tensor representing the sentences with encoded characters (len(batch), max sentence length, max word length). Parameters ---------- batch : ``List[List[str]]``, required A list of ...
def forward(self, # pylint: disable=arguments-differ inputs: torch.Tensor, word_inputs: torch.Tensor = None) -> Dict[str, Union[torch.Tensor, List[torch.Tensor]]]: """ Parameters ---------- inputs: ``torch.Tensor``, required. Shape ``(batch_size...
def forward(self, inputs: torch.Tensor) -> Dict[str, torch.Tensor]: # pylint: disable=arguments-differ """ Compute context insensitive token embeddings for ELMo representations. Parameters ---------- inputs: ``torch.Tensor`` Shape ``(batch_size, sequence_length, 50)...
def forward(self, # pylint: disable=arguments-differ inputs: torch.Tensor, word_inputs: torch.Tensor = None) -> Dict[str, Union[torch.Tensor, List[torch.Tensor]]]: """ Parameters ---------- inputs: ``torch.Tensor``, required. Shape ``(batch_si...
def create_cached_cnn_embeddings(self, tokens: List[str]) -> None: """ Given a list of tokens, this method precomputes word representations by running just the character convolutions and highway layers of elmo, essentially creating uncontextual word vectors. On subsequent forward passes,...
def normalize_text(text: str) -> str: """ Performs a normalization that is very similar to that done by the normalization functions in SQuAD and TriviaQA. This involves splitting and rejoining the text, and could be a somewhat expensive operation. """ return ' '.join([token ...