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BrentLab
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mahendrawada_2025

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transcription-factors

gene-expression

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mahendrawada_2025

8.39 GB

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3 contributors

History: 68 commits

Chase Mateusiak

adding roles to datacard

8bb5313 about 18 hours ago

chec_genome_map
Restructure repository with new dataset organization 9 months ago
chec_genome_map_control
Restructure repository with new dataset organization 9 months ago
scripts
adding actual control fastqs to scripts/data 1 day ago
.gitattributes

2.46 kB
initial commit about 1 year ago
.gitignore

33 Bytes
addressing typos in readme about 21 hours ago
README.md

72 kB
adding roles to datacard about 18 hours ago
bp500_peaks.parquet

5.15 MB
xet

updating peak calls such that no peak promoters are included with NA 2 days ago
chec_genome_map_control_meta.parquet

1.16 kB
xet

Restructure repository with new dataset organization 9 months ago
chec_genome_map_meta.parquet

12.6 kB
xet

Restructure repository with new dataset organization 9 months ago
chec_mahendrawada_2025.parquet

1.22 MB
xet

Upload chec_mahendrawada_2025.parquet with huggingface_hub 11 months ago
chec_mahendrawada_m2025_af_combined.parquet

65.6 MB
xet

updating yiming after finding bug in background calculation 15 days ago
chec_mahendrawada_m2025_af_combined_intergenic.parquet

59.9 MB
xet

updating intergenic replicates and combined after finding bug in total background count, counting inserts rather than depth 15 days ago
chec_mahendrawada_m2025_af_combined_meta.parquet

6.64 kB
xet

Restructure repository with new dataset organization 9 months ago
chec_mahendrawada_m2025_af_combined_mindel.parquet

330 MB
xet

updating mindel after finding bug in background calculation 15 days ago
chec_mahendrawada_m2025_af_combined_start_codon_500bp.parquet

65.7 MB
xet

updating 500bp promoter enrichment after finding bug in background calculation 15 days ago
chec_mahendrawada_m2025_af_replicates.parquet

197 MB
xet

updating yiming after finding bug in background calculation 15 days ago
chec_mahendrawada_m2025_af_replicates_intergenic.parquet

180 MB
xet

updating intergenic replicates and combined after finding bug in total background count, counting inserts rather than depth 15 days ago
chec_mahendrawada_m2025_af_replicates_mindel.parquet

994 MB
xet

updating mindel after finding bug in background calculation 15 days ago
chec_mahendrawada_m2025_af_replicates_start_codon_500bp.parquet

197 MB
xet

updating 500bp promoter enrichment after finding bug in background calculation 15 days ago
degron_counts.parquet

95.5 MB
xet

updating rnaseq data 9 months ago
degron_counts_meta.parquet

26 kB
xet

Restructure repository with new dataset organization 9 months ago
features_mahendrawada_2025.parquet

431 kB
xet

Upload 3 files about 1 year ago
intergenic_peaks.parquet

5.23 MB
xet

updating peak calls such that no peak promoters are included with NA 2 days ago
kang_peaks.parquet

5.75 MB
xet

updating peak calls such that no peak promoters are included with NA 2 days ago
mindel_peaks.parquet

4.82 MB
xet

updating peak calls such that no peak promoters are included with NA 2 days ago
mnase_fusion_rnaseq_counts.parquet

1.34 MB
xet

updating rnaseq data 9 months ago
mnase_fusion_rnaseq_counts_meta.parquet

5.62 kB
xet

Restructure repository with new dataset organization 9 months ago
rnaseq_mahendrawada_2025.parquet

288 kB
xet

Upload rnaseq_mahendrawada_2025.parquet with huggingface_hub 11 months ago
rnaseq_reprocessed.parquet

41.6 MB
xet

removing responsive column from rnaseq reprocessed and updating readme 1 day ago
wt_baseline_counts.parquet

1.01 MB
xet

updating rnaseq data 9 months ago
wt_baseline_counts_meta.parquet

4.61 kB
xet

Restructure repository with new dataset organization 9 months ago
wt_degron_control_counts.parquet

658 kB
xet

updating rnaseq data 9 months ago
wt_degron_control_counts_meta.parquet

4.5 kB
xet

Restructure repository with new dataset organization 9 months ago