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TOAST 2 database (toast.duckdb)
A DuckDB database of NASA OSDR GeneLab differential-expression results for 40 Arabidopsis
thaliana studies (596 single-factor contrasts), with GO, KEGG, PlantTFDB and PANTHER
annotations. It is built by the pipeline at https://github.com/dr-richard-barker/toast2. That repository's
docs/verification_report.md lists the contents and the checks run against the raw GeneLab
files. Source and annotation provenance is in the provenance table.
The data keep the licences of their sources (NASA OSDR, Gene Ontology CC BY 4.0, KEGG academic use, PlantTFDB, PANTHER, UniProt CC BY 4.0). See the repository README.
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