Add dataset card with metadata and links
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by nielsr HF Staff - opened
README.md
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---
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license: mit
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task_categories:
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- text-classification
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language:
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- en
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tags:
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- dna
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- genomics
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---
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# EvoLen: Evolution-Guided Tokenization for DNA Language Model
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This repository contains datasets and tokenizer files from the paper **EvoLen: Evolution-Guided Tokenization for DNA Language Model** (COLM 2026). EvoLen is a DNA tokenizer that combines evolutionary stratification with length-aware decoding to preserve functional sequence patterns.
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- **Paper**: [Hugging Face Paper Page](https://huggingface.co/papers/2604.08698)
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- **GitHub**: [https://github.com/HN020719/EvoLen](https://github.com/HN020719/EvoLen)
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- **Hugging Face Organization**: [EvoLenTokenizer](https://huggingface.co/EvoLenTokenizer)
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## Contents
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The dataset includes benchmark datasets for downstream sequence classification tasks:
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- **NT-benchmarks** (Nucleotide Transformer, 18 tasks)
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- **GUE-benchmarks** (Genome Understanding Evaluation, 27 tasks)
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- **GBM-benchmarks** (GenomicBenchmarks, 9 tasks)
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- **ATAC-benchmarks** (human/mouse superclass classification)
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- **Screen-benchmarks** (ENCODE cCRE classification, 8-way)
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It also contains the EvoLen tokenizer, baseline BPE tokenizer, and ablation variant tokenizers.
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## Usage
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For detailed instructions on downloading the data, training models, and reproducing experiments, please refer to the [GitHub repository](https://github.com/HN020719/EvoLen). The repository provides scripts and a CLI (`sft_evolen.py`) for fine-tuning on the benchmarks.
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## License
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The datasets and code are released under the MIT License. See the LICENSE file in the GitHub repository for details.
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## Citation
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If you use this dataset in your work, please cite the paper:
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```bibtex
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@inproceedings{huang2026evolen,
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title = {EvoLen: Evolution-Guided Tokenization for DNA Language Model},
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author = {Huang, Nan and Zhou, Xiaoxiao and Cui, Junxia and
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Tapia-Pacheco, Mario and Amariuta, Tiffany and Li, Yang and
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Shang, Jingbo},
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booktitle = {Conference on Language Modeling (COLM)},
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year = {2026}
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}
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```
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