Add dataset card with metadata and links
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by nielsr HF Staff - opened
README.md
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---
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license: mit
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task_categories:
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- other
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tags:
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- dna
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- genomics
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- tokenization
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- language-model
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---
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This dataset accompanies the paper **EvoLen: Evolution-Guided Tokenization for DNA Language Model** ([Hugging Face paper](https://huggingface.co/papers/2604.08698)). It contains the tokenizer files, pretrained and fine-tuned model checkpoints, and benchmark datasets used for evaluating the EvoLen tokenizer.
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The official code and additional resources are available at [github.com/HN020719/EvoLen](https://github.com/HN020719/EvoLen). Pretrained and fine-tuned models, as well as the benchmark datasets, are hosted under the [EvoLenTokenizer Hugging Face organization](https://huggingface.co/EvoLenTokenizer).
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### Contents
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- Tokenizer files (EvoLen and baseline BPE) for various vocabulary sizes
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- Pretrained MLM checkpoints (100k and 200k steps)
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- Benchmark datasets: Nucleotide Transformer (NT), GUE, GenomicBenchmarks (GBM), ATAC-seq, and SCREEN cCRE tasks
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### Sample Usage
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The following example demonstrates how to run a fine-tuning task using the provided scripts (from the GitHub README):
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```bash
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cd ~/evolen
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python sft_evolen.py \
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--model evolen \
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--scale 100k \
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--benchmark ATAC \
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--task human_mouse_superclass_allchr \
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--data-path ~/evolen_data/ATAC \
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--output-path ~/sft_outputs \
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--project-name EvoLen-ATAC \
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--gpu-id 0 \
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--wandb
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```
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For full instructions, please refer to the [GitHub repository](https://github.com/HN020719/EvoLen).
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