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Add dataset card with metadata and links

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by nielsr HF Staff - opened
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  1. README.md +39 -0
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+ ---
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+ license: mit
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+ task_categories:
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+ - other
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+ tags:
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+ - dna
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+ - genomics
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+ - tokenization
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+ - language-model
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+ ---
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+
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+ This dataset accompanies the paper **EvoLen: Evolution-Guided Tokenization for DNA Language Model** ([Hugging Face paper](https://huggingface.co/papers/2604.08698)). It contains the tokenizer files, pretrained and fine-tuned model checkpoints, and benchmark datasets used for evaluating the EvoLen tokenizer.
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+
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+ The official code and additional resources are available at [github.com/HN020719/EvoLen](https://github.com/HN020719/EvoLen). Pretrained and fine-tuned models, as well as the benchmark datasets, are hosted under the [EvoLenTokenizer Hugging Face organization](https://huggingface.co/EvoLenTokenizer).
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+
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+ ### Contents
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+ - Tokenizer files (EvoLen and baseline BPE) for various vocabulary sizes
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+ - Pretrained MLM checkpoints (100k and 200k steps)
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+ - Benchmark datasets: Nucleotide Transformer (NT), GUE, GenomicBenchmarks (GBM), ATAC-seq, and SCREEN cCRE tasks
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+
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+ ### Sample Usage
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+ The following example demonstrates how to run a fine-tuning task using the provided scripts (from the GitHub README):
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+
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+ ```bash
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+ cd ~/evolen
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+
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+ python sft_evolen.py \
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+ --model evolen \
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+ --scale 100k \
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+ --benchmark ATAC \
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+ --task human_mouse_superclass_allchr \
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+ --data-path ~/evolen_data/ATAC \
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+ --output-path ~/sft_outputs \
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+ --project-name EvoLen-ATAC \
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+ --gpu-id 0 \
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+ --wandb
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+ ```
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+
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+ For full instructions, please refer to the [GitHub repository](https://github.com/HN020719/EvoLen).