| --- |
| task_categories: |
| - zero-shot-classification |
| tags: |
| - biology |
| - genomics |
| - long-context |
| configs: |
| - config_name: hg38 |
| data_files: |
| - split: test |
| path: hg38.parquet |
| - config_name: ClinVar_VEP_results |
| data_files: |
| - split: test |
| path: ClinVar_VEP_results.parquet |
| --- |
| |
| ## Updates |
| **[2025-09-09]** We have added ClinVar variant effect prediction results to the repository. The evaluation dataset was sourced from [SongLab](https://huggingface.co/datasets/songlab/clinvar/tree/main). The benchmark includes comparisons of GENERator against Evo2, NT, NT-v2, HyenaDNA, GPN-MSA, CADD, phyloP, and phastCons. |
|
|
| ## Abouts |
| The human reference genome data is sourced from the [NCBI website](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000001405.40/). |
|
|
| We have applied minor formatting adjustments to the dataset to facilitate streamlined data analysis. |
|
|
| ## How to use |
| ```python |
| from datasets import load_dataset |
| |
| datasets = load_dataset("GenerTeam/variant-effect-prediction") |
| ``` |
