| UniProt search (6/17/2025): |
| (cc_scl_term_exp:SL-0086) OR (cc_scl_term_exp:SL-0191) OR (cc_scl_term_exp:SL-0243) OR (cc_scl_term_exp:SL-0162) OR (cc_scl_term_exp:SL-0173) OR (cc_scl_term_exp:SL-0209) OR (cc_scl_term_exp:SL-0095) OR (cc_scl_term_exp:SL-0272) OR (cc_scl_term_exp:SL-0158) OR (cc_scl_term_exp:SL-0132) OR (cc_scl_term_exp:SL-0204) OR (cc_scl_term_exp:SL-0049) OR (cc_scl_term_exp:SL-0041) |
| |
| Filtered for specific subcellular location terms: |
| (1) Cytoplasm |
| (2) Nucleus |
| (3) Secreted |
| (4) Membrane |
| (5) Mitochondria |
| (6) Plastid |
| (7) Endoplasmic Reticulum |
| (8) Vacuole |
| (9) Lysosome |
| (10) Golgi Apparatus |
| (11) Peroxisome |
| (12) Chloroplast |
| (13) Cell Wall |
| |
| Curation steps: |
| - Filtered for sequence length >=20 and <=2048 |
| - CD-HIT using Docker at 80% similarity threshold and n=5 |
| - Keep representative sequences |
| - Parse subcellular locations into a clean list of labels (remove notes & ECO numbers) |
| - Keep only examples with label in the location map (above) |
| - Remove duplicates |
| - Unique label list (assign 0 or 1 to a bitstring), convert to vector |
| - Shuffle and split randomly into train, valid (1k), and test (1k) |
| |
| --- |
| dataset_info: |
| features: |
| - name: labels |
| dtype: string |
| - name: seqs |
| dtype: string |
| splits: |
| - name: train |
| num_bytes: 15913904 |
| num_examples: 32638 |
| - name: valid |
| num_bytes: 472742 |
| num_examples: 1000 |
| - name: test |
| num_bytes: 484576 |
| num_examples: 1000 |
| download_size: 15433449 |
| dataset_size: 16871222 |
| configs: |
| - config_name: default |
| data_files: |
| - split: train |
| path: data/train-* |
| - split: valid |
| path: data/valid-* |
| - split: test |
| path: data/test-* |
| --- |
| |
