Blame for show_material_memory.py

#!/usr/bin/env python3
"""Show two zero-strain states with different stresses in published train data.

Install: pip install numpy matplotlib huggingface_hub
Run: python show_material_memory.py
Offline: python show_material_memory.py --shard /path/to/part-00002.h5
Code: Apache-2.0; source data: CC BY 4.0, Haoming Luo / AgentFEM.
This reads a synthetic material-point history, not a DENIM prediction.
"""
import argparse
import hashlib
import json
from pathlib import Path

import numpy as np

REPO = "HaomingLuo/AgentFEM-Material-Loading-Memory"
REVISION = "cc9644aa5b51ac4f0ff5cccc9a42452de0d220a3"
FILE = "data/t2_material_loading_memory_v1/shards/part-00002.h5"
SHA256 = "952b90eed1ce3ac288487cf31180384fc12f79aa03d95e4885bfd73b85c9a46d"
SAMPLE = "00252"  # First training trajectory in the symmetric-cyclic J2 cohort.
EXCERPT_REVISION = "62cedc709b159c9faa652e0aff34ff48771b3f07"
EXCERPT_FILE = "example/training-history-00252.npz"
EXCERPT_SHA256 = "c16bd5da346dd6926d32c730ad9ad040c5bd9a51dccba92b1f8c4ae1dce8717f"
ARRAY_NAMES = ("total_strain", "signed_equivalent_strain",
               "signed_equivalent_stress_pa", "equivalent_plastic_strain")


def read_sample(path, excerpt=False):
    digest = hashlib.sha256(Path(path).read_bytes()).hexdigest()
    if digest != (EXCERPT_SHA256 if excerpt else SHA256):
        raise ValueError("Input checksum mismatch; use the pinned published file.")
    if excerpt:
        with np.load(path, allow_pickle=False) as packed:
            if (str(packed["split"]) != "train" or str(packed["sample_id"]) != SAMPLE
                    or str(packed["source_sha256"]) != SHA256):
                raise ValueError("Unexpected excerpt provenance.")
            arrays = {name: packed[name] for name in ARRAY_NAMES}
            case_id = str(packed["case_id"])
    else:
        import h5py  # Only needed when inspecting the complete source shard.
        with h5py.File(path, "r") as f:
            g = f[SAMPLE]
            if str(g.attrs["split"]) != "train":
                raise ValueError("Illustration must use training data only.")
            arrays = {name: g[name][:] for name in ARRAY_NAMES}
            case_id = str(g.attrs["case_id"])
    if not all(np.isfinite(a).all() for a in arrays.values()):
        raise ValueError("Non-finite trajectory.")
    # First two returns to zero after the virgin state, not maximum-gap selection.
    zero = np.flatnonzero(np.max(np.abs(arrays["total_strain"]), axis=(1, 2)) < 1e-12)
    zero = zero[zero > 0]
    if len(zero) < 2:
        raise ValueError("No two noninitial zero-strain states.")
    a, b = map(int, zero[:2])
    if not np.allclose(arrays["total_strain"][a], arrays["total_strain"][b], atol=1e-12, rtol=0):
        raise ValueError("The complete strain tensors differ.")
    return arrays, a, b, case_id


def main():
    parser = argparse.ArgumentParser(description=__doc__)
    inputs = parser.add_mutually_exclusive_group()
    inputs.add_argument("--shard", type=Path, help="Original HDF5 shard (requires h5py)")
    inputs.add_argument("--sample", type=Path, help="Local 4.5 KB NPZ training excerpt")
    parser.add_argument("--out", type=Path, default=Path("memory-example"))
    args = parser.parse_args()
    if args.shard is None and args.sample is None:
        from huggingface_hub import hf_hub_download
        args.sample = Path(hf_hub_download(REPO, EXCERPT_FILE, repo_type="dataset", revision=EXCERPT_REVISION))
    using_excerpt = args.sample is not None
    d, a, b, case_id = read_sample(args.sample if using_excerpt else args.shard, excerpt=using_excerpt)
    strain = d["signed_equivalent_strain"] * 100
    stress = d["signed_equivalent_stress_pa"] / 1e6
    report = {"repository": REPO, "revision": REVISION, "shard_sha256": SHA256,
              "input_kind": "lossless_training_excerpt" if using_excerpt else "original_shard",
              "input_sha256": EXCERPT_SHA256 if using_excerpt else SHA256,
              "excerpt_revision": EXCERPT_REVISION if using_excerpt else None,
              "sample_id": SAMPLE, "case_id": case_id, "split": "train",
              "selection": "First two noninitial returns to zero strain; no interpolation",
              "states": [{"index": i, "signed_equivalent_strain": float(strain[i]/100),
                          "signed_equivalent_stress_MPa": float(stress[i]),
                          "equivalent_plastic_strain": float(d["equivalent_plastic_strain"][i])}
                         for i in (a, b)],
              "stress_difference_MPa": float(abs(stress[b]-stress[a])),
              "scope": "Synthetic proportional deviatoric J2 material-point history; not experiment or model accuracy."}
    args.out.mkdir(parents=True, exist_ok=True)
    (args.out / "memory-evidence.json").write_text(json.dumps(report, indent=2)+"\n")
    np.savetxt(args.out / "memory-history.csv", np.column_stack((np.arange(len(strain)), strain/100, stress,
               d["equivalent_plastic_strain"])), delimiter=",", comments="",
               header="state,signed_equivalent_strain,signed_equivalent_stress_MPa,equivalent_plastic_strain")
    import matplotlib
    matplotlib.use("Agg")
    import matplotlib.pyplot as plt
    plt.rcParams.update({"font.family": "DejaVu Sans", "font.size": 11})
    bg, panel, fg, muted = "#081418", "#102127", "#edf3f1", "#97afb2"
    colors = ["#85d6cb", "#e9b16d"]
    fig, axes = plt.subplots(1, 2, figsize=(12, 5.7), facecolor=bg)
    fig.subplots_adjust(left=.085, right=.97, bottom=.23, top=.76, wspace=.3)
    for ax in axes:
        ax.set_facecolor(panel)
        ax.tick_params(colors=muted)
        ax.xaxis.label.set_color(fg); ax.yaxis.label.set_color(fg)
        for spine in ax.spines.values(): spine.set_color("#344a50")
        ax.grid(alpha=.12, color=muted)
    steps = np.arange(b+1)
    axes[0].plot(steps, strain[:b+1], color=fg, lw=2)
    axes[0].axhline(0, color=muted, lw=.8, ls="--")
    axes[0].set(xlabel="Loading state (not physical time)", ylabel="Signed equivalent strain / %")
    axes[1].plot(strain[:a+1], stress[:a+1], color=colors[0], lw=2)
    axes[1].plot(strain[a:b+1], stress[a:b+1], color=colors[1], lw=2)
    axes[1].axvline(0, color=muted, lw=.8, ls="--")
    axes[1].set(xlabel="Signed equivalent strain / %", ylabel="Signed equivalent stress / MPa")
    for label, i, color in zip(["A", "B"], (a, b), colors):
        axes[0].scatter(i, strain[i], color=color, s=65, zorder=5)
        axes[0].annotate(label, (i, strain[i]), xytext=(0, 12), textcoords="offset points", ha="center", color=color)
        axes[1].scatter(strain[i], stress[i], color=color, s=65, zorder=5)
        axes[1].annotate(f"{label}  {stress[i]:+.1f} MPa", (strain[i], stress[i]),
                         xytext=(12, 5), textcoords="offset points", color=color, fontsize=10,
                         bbox={"facecolor": panel, "edgecolor": "none", "pad": 2})
    fig.text(.085, .92, "Same strain. Different stress.", color=fg, size=25, weight="bold")
    fig.text(.085, .85, "The loading path leaves a material memory.", color=muted, size=14)
    fig.text(.085, .105, "A and B: zero total strain, different plastic states. No interpolation or neural prediction.", color=fg, size=10)
    fig.text(.085, .055, "AgentFEM  |  Synthetic J2 training history 00252  |  Data: CC BY 4.0", color=muted, size=9)
    fig.savefig(args.out / "material-memory.png", dpi=160, facecolor=bg)
    plt.close(fig)
    print(json.dumps(report, indent=2))


if __name__ == "__main__":
    main()