Hemaxi/3DVesselSegmentation

How to cite

@article{narotamo20243dvascnet,
  title={3DVascNet: An Automated Software for Segmentation and Quantification of Mouse Vascular Networks in 3D},
  author={Narotamo, Hemaxi and Silveira, Margarida and Franco, Cl{\'a}udio A},
  journal={Arteriosclerosis, Thrombosis, and Vascular Biology},
  year={2024},
  publisher={Am Heart Assoc}
}

This repository contains the dataset used in our work.

• masks: contains the 2D segmentation masks;

• stl: contains the 3D masks obtained using PolNet;

• Dataset 1:

Image	Size (X×Y×Z)	Train/Test Split
PBS_ret1	5409×2979×31	Train
PBS_ret2	3375×4599×56	Test
PBS_ret3	6237×3384×38	Test
PBS_ret4	5013×2979×43	Test
PBS_ret5	4838×5561×39	Test
PBS_ret6	4864×4864×88	Test
PBS_ret7	6144×8192×20	Test
sFLT1_ret1	4617×5418×35	Train
sFLT1_ret2	4365×3978×73	Test
sFLT1_ret3	4365×3600×66	Test
VEGF_ret1	2979×4599×42	Train
VEGF_ret2	5319×4878×61	Test
VEGF_ret3	5427×4194×46	Test
VEGF_ret4	5013×4194×38	Test
VEGF_ret5	4365×3978×40	Test
VEGF_ret6	4743×4365×61	Test
VEGF_ret7	4365×4743×42	Test
AngII_ret1	6273×3780×33	Train
AngII_ret2	4851×5571×42	Test
AngII_ret3	4864×3584×48	Test
AngII_ret4	4864×5120×40	Test

• Datasets 2, 3 and 4:

	Image	Size (X×Y×Z)
Dataset 2	Captopril_ret1	4212×5427×35
	Captopril_ret2	4194×5013×34
	Captopril_ret3	4599×3789×36
	Captopril_ret4	3206×3972×37
	Captopril_ret5	3204×4365×54
	Captopril_ret6	3600×4365×60
	RGDS_ret1	3553×4000×67
	RGDS_ret2	2258×3997×42
	RGDS_ret3	3555×4428×48
Dataset 3	FLIJ_ret1	4590×2160×27
	FLIJ_ret2	3384×5427×35
	FLIJ_ret3	2709×5733×41
	FLIJ_ret4	3402×5445×35
	FLIO_ret1	3388×2969×32
	FLIO_ret2	3783×3375×43
	FLIO_ret3	3378×3787×28
	FLIO_ret4	5004×3798×27
	FLIO_ret5	4428×2700×40
	FLIO_ret6	4203×4212×31
	FLIO_ret7	4608×5022×44
	FLIO_ret8	5004×3798×38
Dataset 4	YES_ret1	5632×6656×36
	YES_ret2	4608×5632×36
	YES_ret3	4608×4608×28
	YES_ret4	4608×4608×32
	YES_ret5	4608×4608×24
	YES_ret6	4608×5632×20
	YES_ret7	4608×5632×24