Histochemichael commited on
Commit
3e38d92
·
verified ·
1 Parent(s): b9ec8d6

Preserve raw simulation records batch 13

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/learning_states.npz +3 -0
  2. raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/physics_history.parquet +3 -0
  3. raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/replay.npz +3 -0
  4. raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/state_history.parquet +3 -0
  5. raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/summary.json +29 -0
  6. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/individual_configuration.json +103 -0
  7. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/learning_history.parquet +3 -0
  8. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/learning_states.npz +3 -0
  9. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/physics_history.parquet +3 -0
  10. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/replay.npz +3 -0
  11. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/state_history.parquet +3 -0
  12. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/summary.json +29 -0
  13. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/individual_configuration.json +103 -0
  14. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/learning_history.parquet +3 -0
  15. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/learning_states.npz +3 -0
  16. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/physics_history.parquet +3 -0
  17. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/replay.npz +3 -0
  18. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/state_history.parquet +3 -0
  19. raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/summary.json +29 -0
  20. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/individual_configuration.json +103 -0
  21. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/learning_history.parquet +3 -0
  22. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/learning_states.npz +3 -0
  23. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/physics_history.parquet +3 -0
  24. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/replay.npz +3 -0
  25. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/state_history.parquet +3 -0
  26. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/summary.json +29 -0
  27. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/individual_configuration.json +103 -0
  28. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/learning_history.parquet +3 -0
  29. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/learning_states.npz +3 -0
  30. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/physics_history.parquet +3 -0
  31. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/replay.npz +3 -0
  32. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/state_history.parquet +3 -0
  33. raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/summary.json +29 -0
  34. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/individual_configuration.json +103 -0
  35. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/learning_history.parquet +3 -0
  36. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/learning_states.npz +3 -0
  37. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/physics_history.parquet +3 -0
  38. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/replay.npz +3 -0
  39. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/state_history.parquet +3 -0
  40. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/summary.json +29 -0
  41. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/individual_configuration.json +103 -0
  42. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/learning_history.parquet +3 -0
  43. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/learning_states.npz +3 -0
  44. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/physics_history.parquet +3 -0
  45. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/replay.npz +3 -0
  46. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/state_history.parquet +3 -0
  47. raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/summary.json +29 -0
  48. raw/v4b/validation/dan_silenced/24h/rep03_odor0_side0/individual_configuration.json +103 -0
  49. raw/v4b/validation/dan_silenced/24h/rep03_odor0_side0/learning_history.parquet +3 -0
  50. raw/v4b/validation/dan_silenced/24h/rep03_odor0_side0/learning_states.npz +3 -0
raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3d83a51acd3bf62f9e75fb278fc2a075b9c709d2841bfd93ab0ba60516527e47
3
+ size 134152
raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:614b5694754e95a60696987b9100bd9e464cb4d5f876a8de981bcd99afde5ccc
3
+ size 2464999
raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:35b6b2edf0a189fb7583b4704389fae86e4c9171a209991c56c0717546146b21
3
+ size 83805
raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b0357373788e904b3fd0ab7ee4c18af2949a89191298511bc7a16698181c51eb
3
+ size 369243
raw/v4b/validation/dan_silenced/24h/rep01_odor0_side1/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "dan_silenced",
4
+ "delay_h": 24.0,
5
+ "replicate": 1,
6
+ "paired_odor": "A",
7
+ "b_left": true,
8
+ "fly_id": "consolidating_dan_silenced_24h_1_0_1",
9
+ "gait_seed": 1612451658,
10
+ "sensory_seed": 1104669688,
11
+ "motor_seed": 1986686919,
12
+ "heading_seed": 2293744346,
13
+ "motor_noise_sd": 0.2056477707059677,
14
+ "seed": 1831561266,
15
+ "learning_gain": 0.6434955824022562,
16
+ "choice": "A",
17
+ "choice_latency_s": 5.8483,
18
+ "termination": "test_window_complete",
19
+ "score": 1,
20
+ "neural_value_difference": -0.0005824139054526619,
21
+ "physics_ticks": 58483,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 96000.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.8483,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 932868379
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 932868379,
96
+ "sensory_seed": 124855937,
97
+ "motor_seed": 2967772083,
98
+ "heading_seed": 3320688067,
99
+ "motor_noise_sd": 0.2698603573828778
100
+ },
101
+ "learning_gain": 1.187901225847195,
102
+ "seed": 1576828645
103
+ }
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dce5a634054901dc6bf34f153347d25284ede58e82cd506f28f5da2c0deead8c
3
+ size 8218865
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5e5b3d14a67efc02b9655176afc1ef8ceff3979fa83549e719d469d22426e007
3
+ size 134159
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:85e9223eabfc69100692e6f7e54d024f694b646796f04ba15575f66048b63460
3
+ size 2423062
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:257d2d9574805e1f505d767696f40f80a65846c40f6be050db3563a974a57368
3
+ size 82142
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d4652f484420fc3956eb852be0325f1a53857df0a359182092f71142627e76b1
3
+ size 369029
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side0/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "dan_silenced",
4
+ "delay_h": 24.0,
5
+ "replicate": 1,
6
+ "paired_odor": "B",
7
+ "b_left": false,
8
+ "fly_id": "consolidating_dan_silenced_24h_1_1_0",
9
+ "gait_seed": 932868379,
10
+ "sensory_seed": 124855937,
11
+ "motor_seed": 2967772083,
12
+ "heading_seed": 3320688067,
13
+ "motor_noise_sd": 0.2698603573828778,
14
+ "seed": 1576828645,
15
+ "learning_gain": 1.187901225847195,
16
+ "choice": "B",
17
+ "choice_latency_s": 5.7517000000000005,
18
+ "termination": "test_window_complete",
19
+ "score": 1,
20
+ "neural_value_difference": -0.0009680884424489014,
21
+ "physics_ticks": 57517,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 96000.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.7517000000000005,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 1701640648
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 1701640648,
96
+ "sensory_seed": 1265396502,
97
+ "motor_seed": 2325769307,
98
+ "heading_seed": 2745518678,
99
+ "motor_noise_sd": 0.1726732563993123
100
+ },
101
+ "learning_gain": 2.0640641632979406,
102
+ "seed": 3762185218
103
+ }
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b1ef780abc089986b8c075da53ce8983b4cd9b0fb5994407de3e773958e9a8c2
3
+ size 8214008
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6e39fd26fb378cb3ca5d9a024c096644453d44f0ddd66f0166108873c148be5c
3
+ size 134029
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7b7c199d50acfd24271d213af595a54813c1737547ba8bc851cf7a3f93ae5ccd
3
+ size 2418934
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5f71af40db3a9055dc0431e1b30cb6220cc22a3a984e698c9aa239a853fec92c
3
+ size 82110
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2c9b498f50d0597c928bdb3084af74e4af8c68c0154e16bdde755f69770ea349
3
+ size 369562
raw/v4b/validation/dan_silenced/24h/rep01_odor1_side1/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "dan_silenced",
4
+ "delay_h": 24.0,
5
+ "replicate": 1,
6
+ "paired_odor": "B",
7
+ "b_left": true,
8
+ "fly_id": "consolidating_dan_silenced_24h_1_1_1",
9
+ "gait_seed": 1701640648,
10
+ "sensory_seed": 1265396502,
11
+ "motor_seed": 2325769307,
12
+ "heading_seed": 2745518678,
13
+ "motor_noise_sd": 0.1726732563993123,
14
+ "seed": 3762185218,
15
+ "learning_gain": 2.0640641632979406,
16
+ "choice": "A",
17
+ "choice_latency_s": 5.7462,
18
+ "termination": "test_window_complete",
19
+ "score": -1,
20
+ "neural_value_difference": -0.0013206126450084233,
21
+ "physics_ticks": 57462,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 96000.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.7462,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 434438594
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 434438594,
96
+ "sensory_seed": 2136720531,
97
+ "motor_seed": 2030434503,
98
+ "heading_seed": 4242831422,
99
+ "motor_noise_sd": 0.15202684144989953
100
+ },
101
+ "learning_gain": 0.647784808005143,
102
+ "seed": 2884202046
103
+ }
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:242c03ba958476716b4f2bb261027ff9db46d8fc12449115e03e453457c8c8cb
3
+ size 8228711
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:efb60f5b0bb8b749ce5dfa06ec95dce0f69ae03cc60bdb51caf8557e5e8e627f
3
+ size 134190
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5ec13b3a693fcfed7a74c896e1eb1017d6e60090719bb8086adc26e04362ddad
3
+ size 2435854
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0e262791053ce50cca57e3a0192c3638514ef908e1ae3a234339a575713a758f
3
+ size 82674
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:71cbd0bb07e0eacef986e3b1b29759edbfcb8461ceb5c243b73d23065eb45500
3
+ size 368886
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side0/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "dan_silenced",
4
+ "delay_h": 24.0,
5
+ "replicate": 2,
6
+ "paired_odor": "A",
7
+ "b_left": false,
8
+ "fly_id": "consolidating_dan_silenced_24h_2_0_0",
9
+ "gait_seed": 434438594,
10
+ "sensory_seed": 2136720531,
11
+ "motor_seed": 2030434503,
12
+ "heading_seed": 4242831422,
13
+ "motor_noise_sd": 0.15202684144989953,
14
+ "seed": 2884202046,
15
+ "learning_gain": 0.647784808005143,
16
+ "choice": "B",
17
+ "choice_latency_s": 5.7851,
18
+ "termination": "test_window_complete",
19
+ "score": -1,
20
+ "neural_value_difference": -0.0005855371088797564,
21
+ "physics_ticks": 57851,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 96000.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.7851,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 3248101659
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 3248101659,
96
+ "sensory_seed": 2402709296,
97
+ "motor_seed": 366634821,
98
+ "heading_seed": 3844372427,
99
+ "motor_noise_sd": 0.18310368963890525
100
+ },
101
+ "learning_gain": 0.9329634247272025,
102
+ "seed": 737404338
103
+ }
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c9c47a8d9fbb7a1b9d7d9aecf6a4815c7bc046cde2218a0dd5dd07d612935adb
3
+ size 8222682
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6160f82fed2db27d299ef12457f2b4b6b96f0f62d3f5e2023362501f310beeba
3
+ size 134198
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e55286a4ad348890d3b3892344260625ca047642ac0cf8bf15c86d811f1d71ce
3
+ size 2423815
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:32dc685a2286056efe2a928b94caa93e6ad381c87bc87c98f05857ef8e737697
3
+ size 82093
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f8d0bc4d40529e56ece307187ab82b781ca931e72c88934a03b69aded495ea20
3
+ size 368766
raw/v4b/validation/dan_silenced/24h/rep02_odor0_side1/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "dan_silenced",
4
+ "delay_h": 24.0,
5
+ "replicate": 2,
6
+ "paired_odor": "A",
7
+ "b_left": true,
8
+ "fly_id": "consolidating_dan_silenced_24h_2_0_1",
9
+ "gait_seed": 3248101659,
10
+ "sensory_seed": 2402709296,
11
+ "motor_seed": 366634821,
12
+ "heading_seed": 3844372427,
13
+ "motor_noise_sd": 0.18310368963890525,
14
+ "seed": 737404338,
15
+ "learning_gain": 0.9329634247272025,
16
+ "choice": "A",
17
+ "choice_latency_s": 5.7527,
18
+ "termination": "test_window_complete",
19
+ "score": 1,
20
+ "neural_value_difference": -0.0007756006535826297,
21
+ "physics_ticks": 57527,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 96000.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.7527,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 126951463
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 126951463,
96
+ "sensory_seed": 39686645,
97
+ "motor_seed": 616572155,
98
+ "heading_seed": 298415770,
99
+ "motor_noise_sd": 0.1803552343030543
100
+ },
101
+ "learning_gain": 0.8849181186421206,
102
+ "seed": 1420700594
103
+ }
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8200718c80beeb03587c30063f8e9271064c2fcb6174f0db1aa97d579ca0834b
3
+ size 8220714
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:70b1f61e9da445595d980f91c149ec8e566aab20e0d14ce82c05cf7fe6a8e909
3
+ size 134201
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a66008d91d522809726ea40d7201c20f5181f8b4058a16ed4efbe3af014a2ca4
3
+ size 2435122
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c6b231ceaa2f89f770e20faca1b382e82ff01b183303fccb664152f124a6cbe6
3
+ size 82716
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dee85d29cbb1ee3de28ba5750b337aff1bd506c5a1452dd17531bfaeb04d02ea
3
+ size 369188
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side0/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "dan_silenced",
4
+ "delay_h": 24.0,
5
+ "replicate": 2,
6
+ "paired_odor": "B",
7
+ "b_left": false,
8
+ "fly_id": "consolidating_dan_silenced_24h_2_1_0",
9
+ "gait_seed": 126951463,
10
+ "sensory_seed": 39686645,
11
+ "motor_seed": 616572155,
12
+ "heading_seed": 298415770,
13
+ "motor_noise_sd": 0.1803552343030543,
14
+ "seed": 1420700594,
15
+ "learning_gain": 0.8849181186421206,
16
+ "choice": "A",
17
+ "choice_latency_s": 5.7854,
18
+ "termination": "test_window_complete",
19
+ "score": -1,
20
+ "neural_value_difference": -0.0007940305648758262,
21
+ "physics_ticks": 57854,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 96000.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.7854,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 2786451104
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 2786451104,
96
+ "sensory_seed": 1972063733,
97
+ "motor_seed": 4026158717,
98
+ "heading_seed": 3230679704,
99
+ "motor_noise_sd": 0.18632019178074644
100
+ },
101
+ "learning_gain": 0.7610093898561566,
102
+ "seed": 4069101657
103
+ }
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:215b206bae579d829b70053fca08b570b544c758d3674e04f19164ca0962fb95
3
+ size 8236876
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6a9cd12ecaed82fcd6ed0d9132730d02e844d68af101ee078a1b1bdcf6148260
3
+ size 134264
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c1304f2cdc484c0d4cec5553bb01bf6bb200bfd0d2a2389b539d6393840acbb8
3
+ size 2474835
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:18b49649e67ff654c656fd26208ebeb2d7c2b596339f7270bb53f8235f032b7c
3
+ size 83817
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2703f2838d23f18762190658c71b858adf9df493ae12c79ccd3095fca138f185
3
+ size 370152
raw/v4b/validation/dan_silenced/24h/rep02_odor1_side1/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "dan_silenced",
4
+ "delay_h": 24.0,
5
+ "replicate": 2,
6
+ "paired_odor": "B",
7
+ "b_left": true,
8
+ "fly_id": "consolidating_dan_silenced_24h_2_1_1",
9
+ "gait_seed": 2786451104,
10
+ "sensory_seed": 1972063733,
11
+ "motor_seed": 4026158717,
12
+ "heading_seed": 3230679704,
13
+ "motor_noise_sd": 0.18632019178074644,
14
+ "seed": 4069101657,
15
+ "learning_gain": 0.7610093898561566,
16
+ "choice": "A",
17
+ "choice_latency_s": 5.8756,
18
+ "termination": "test_window_complete",
19
+ "score": -1,
20
+ "neural_value_difference": -0.0007118004516767255,
21
+ "physics_ticks": 58756,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 96000.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.8756,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/dan_silenced/24h/rep03_odor0_side0/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 3643800938
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 3643800938,
96
+ "sensory_seed": 3821317130,
97
+ "motor_seed": 2575526219,
98
+ "heading_seed": 2312495925,
99
+ "motor_noise_sd": 0.2189455198221584
100
+ },
101
+ "learning_gain": 0.9530231114257486,
102
+ "seed": 244977469
103
+ }
raw/v4b/validation/dan_silenced/24h/rep03_odor0_side0/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9b3462f60b67121ad0662625cc5ff90909a7c0eaf551366757a0dd2c3ed8d07f
3
+ size 8211661
raw/v4b/validation/dan_silenced/24h/rep03_odor0_side0/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d769fa9a5829b8119b36b5e0155bead8ca8601259214e6e2e10c6c57e635efdc
3
+ size 134145