Hugging Face's logo

Datasets:
Histochemichael
/
fly-sud-simulation

Modalities:
Tabular
Text
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
neuroscience
drosophila
flywire
mujoco
simulation
associative-learning
Libraries:
Datasets
pandas
Polars
Dataset card Data Studio Files
xet
 Community
1
Histochemichael commited on
Commit
8bcdf06
·
verified ·
1 Parent(s): de2b9fe

Preserve remaining raw simulation records batch 1

Browse files
Files changed (28) hide show
  1. raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/learning_states.npz +3 -0
  2. raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/physics_history.parquet +3 -0
  3. raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/replay.npz +3 -0
  4. raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/state_history.parquet +3 -0
  5. raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/summary.json +29 -0
  6. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/individual_configuration.json +103 -0
  7. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/learning_history.parquet +3 -0
  8. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/learning_states.npz +3 -0
  9. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/physics_history.parquet +3 -0
  10. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/replay.npz +3 -0
  11. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/state_history.parquet +3 -0
  12. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/summary.json +29 -0
  13. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/individual_configuration.json +103 -0
  14. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/learning_history.parquet +3 -0
  15. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/learning_states.npz +3 -0
  16. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/physics_history.parquet +3 -0
  17. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/replay.npz +3 -0
  18. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/state_history.parquet +3 -0
  19. raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/summary.json +29 -0
  20. raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/individual_configuration.json +103 -0
  21. raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/learning_history.parquet +3 -0
  22. raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/learning_states.npz +3 -0
  23. raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/physics_history.parquet +3 -0
  24. raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/replay.npz +3 -0
  25. raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/state_history.parquet +3 -0
  26. raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/summary.json +29 -0
  27. raw/v4b/validation/unpaired/0.5h/rep01_odor0_side1/individual_configuration.json +103 -0
  28. raw/v4b/validation/unpaired/0.5h/rep01_odor0_side1/learning_history.parquet +3 -0
raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:77b9cdebbf788aeb08c3881273276b95dd1725f8c89b67276bc2727bf4ecdf95
3
+ size 133613
raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:377073303de3160d9d7bd1876848d0415e1962c199fb065259e2621a5a423a5e
3
+ size 2437271
raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:07bcd4fbf15c07d62e2196f48202a977494fec586cccd71147d2e99f9a066def
3
+ size 82705
raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:66f970cd6c1f1575251e2ee020855db0df786c50913255c1b05df3f4ed7f3fdf
3
+ size 372582
raw/v4b/validation/unpaired/0.5h/rep00_odor0_side1/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "unpaired",
4
+ "delay_h": 0.5,
5
+ "replicate": 0,
6
+ "paired_odor": "A",
7
+ "b_left": true,
8
+ "fly_id": "consolidating_unpaired_0.5h_0_0_1",
9
+ "gait_seed": 1699953838,
10
+ "sensory_seed": 2771973706,
11
+ "motor_seed": 579860204,
12
+ "heading_seed": 1454073243,
13
+ "motor_noise_sd": 0.1454308089785328,
14
+ "seed": 2821218807,
15
+ "learning_gain": 0.772068479661832,
16
+ "choice": "A",
17
+ "choice_latency_s": 5.7833000000000006,
18
+ "termination": "test_window_complete",
19
+ "score": 1,
20
+ "neural_value_difference": 0.0007115519116838422,
21
+ "physics_ticks": 57833,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 11400.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.7833000000000006,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 858982253
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 858982253,
96
+ "sensory_seed": 4236110490,
97
+ "motor_seed": 3082282830,
98
+ "heading_seed": 755115571,
99
+ "motor_noise_sd": 0.14588286938809988
100
+ },
101
+ "learning_gain": 1.099924225590063,
102
+ "seed": 3255161203
103
+ }
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6f7f82a9d6ef1237ff410ca49a670ecd937e39f6419a9fa9be14f9b81b0df1b4
3
+ size 2455246
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c36d374c71e7e6c4d64457a98786ff44c7662e61dcf894d8a35a370d342d8aa9
3
+ size 133557
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fd609883cf6c44741492a20b086b4fd910be9b0506a52583101df8d198e34b6f
3
+ size 2447273
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c47c4a296f860a63100e931033048457c0fbcb6063b49d0c56494385e4594a73
3
+ size 83264
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:445a42a0973531a4d75d82cd84d4ec7f4d11ef3ace602f6a9278abb5b8eb384a
3
+ size 372218
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side0/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "unpaired",
4
+ "delay_h": 0.5,
5
+ "replicate": 0,
6
+ "paired_odor": "B",
7
+ "b_left": false,
8
+ "fly_id": "consolidating_unpaired_0.5h_0_1_0",
9
+ "gait_seed": 858982253,
10
+ "sensory_seed": 4236110490,
11
+ "motor_seed": 3082282830,
12
+ "heading_seed": 755115571,
13
+ "motor_noise_sd": 0.14588286938809988,
14
+ "seed": 3255161203,
15
+ "learning_gain": 1.099924225590063,
16
+ "choice": "B",
17
+ "choice_latency_s": 5.8083,
18
+ "termination": "test_window_complete",
19
+ "score": 1,
20
+ "neural_value_difference": 0.0008670547057293492,
21
+ "physics_ticks": 58083,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 11400.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.8083,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 4136859016
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 4136859016,
96
+ "sensory_seed": 1747656446,
97
+ "motor_seed": 2070033820,
98
+ "heading_seed": 1036154380,
99
+ "motor_noise_sd": 0.155043777483849
100
+ },
101
+ "learning_gain": 1.1488409665371948,
102
+ "seed": 96522684
103
+ }
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0245166b491092b930ab49ae4d5344eb20587e494990f0802f0484ebf86d752f
3
+ size 2450643
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:76ad719f280ec86b302cb78a448e82c64e91b63036f7b1c6612f046bc9f3b561
3
+ size 133583
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6f7779556e6e5d234982b4170db24ad16ebbc01cecde65541b6a7866e476c5db
3
+ size 2481686
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c9cfd58de950fc0c4b5d99fc8e9525f4de665c28afb502d163ccb29fb534dae2
3
+ size 84405
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:76d653df0ad10f219b0ebce9fc3b712ccb260ac33a34ecbce7724c965f1648a4
3
+ size 372820
raw/v4b/validation/unpaired/0.5h/rep00_odor1_side1/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "unpaired",
4
+ "delay_h": 0.5,
5
+ "replicate": 0,
6
+ "paired_odor": "B",
7
+ "b_left": true,
8
+ "fly_id": "consolidating_unpaired_0.5h_0_1_1",
9
+ "gait_seed": 4136859016,
10
+ "sensory_seed": 1747656446,
11
+ "motor_seed": 2070033820,
12
+ "heading_seed": 1036154380,
13
+ "motor_noise_sd": 0.155043777483849,
14
+ "seed": 96522684,
15
+ "learning_gain": 1.1488409665371948,
16
+ "choice": "A",
17
+ "choice_latency_s": 5.8913,
18
+ "termination": "test_window_complete",
19
+ "score": -1,
20
+ "neural_value_difference": 0.0009055476355936357,
21
+ "physics_ticks": 58913,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 11400.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.8913,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 1237759345
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 1237759345,
96
+ "sensory_seed": 1618004286,
97
+ "motor_seed": 694790661,
98
+ "heading_seed": 2903447987,
99
+ "motor_noise_sd": 0.18687771814324375
100
+ },
101
+ "learning_gain": 0.8592270453538753,
102
+ "seed": 2233507186
103
+ }
raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2c6b28a35d87cb7fe30868700c2f144d49e8a3b76ed1f8d7638c6c2f6fad41b7
3
+ size 2445556
raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/learning_states.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fa3a3488960c1347117ce0356c7b4018c9829d582b4b49c1c79ca128cd2cf1c7
3
+ size 133599
raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/physics_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c701c763f5f60892baa124f2ad4e31b0e2531a9ef5c75ca7fb90485d451a5b8f
3
+ size 2434748
raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/replay.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:478ee739ed57b8f3fa23b10da664d84b43e0cbf84c515be801596d729f1e0602
3
+ size 82706
raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/state_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:60144ad118fd37ae6a9b6e42365b8491e20d24ba2cb9a0eac59127cb9855d77e
3
+ size 371222
raw/v4b/validation/unpaired/0.5h/rep01_odor0_side0/summary.json ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model": "consolidating",
3
+ "condition": "unpaired",
4
+ "delay_h": 0.5,
5
+ "replicate": 1,
6
+ "paired_odor": "A",
7
+ "b_left": false,
8
+ "fly_id": "consolidating_unpaired_0.5h_1_0_0",
9
+ "gait_seed": 1237759345,
10
+ "sensory_seed": 1618004286,
11
+ "motor_seed": 694790661,
12
+ "heading_seed": 2903447987,
13
+ "motor_noise_sd": 0.18687771814324375,
14
+ "seed": 2233507186,
15
+ "learning_gain": 0.8592270453538753,
16
+ "choice": "A",
17
+ "choice_latency_s": 5.7809,
18
+ "termination": "test_window_complete",
19
+ "score": 1,
20
+ "neural_value_difference": 0.0007917553556394213,
21
+ "physics_ticks": 57809,
22
+ "control_rows": 6000,
23
+ "assay_duration_s": 120.0,
24
+ "test_start_biological_s": 11400.0,
25
+ "captured": true,
26
+ "physical_time_s": 5.7809,
27
+ "capture_policy": "absorbing collection region; approximation to collection vials",
28
+ "diagnostic": false
29
+ }
raw/v4b/validation/unpaired/0.5h/rep01_odor0_side1/individual_configuration.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "config": {
3
+ "schema_version": 1,
4
+ "dataset": "FlyWire FAFB v783",
5
+ "master_seed": 920618,
6
+ "odor_encoding_seed": 7331,
7
+ "min_pair_synapses": 5,
8
+ "kc_threshold": 0.15,
9
+ "kc_sparsity_quantile": 0.85,
10
+ "odor_sparsity": 0.2,
11
+ "acquisition_per_s": 0.0015,
12
+ "aversive_tau_h": 4.0,
13
+ "consolidation_tau_h": 12.0,
14
+ "long_memory_tau_h": 168,
15
+ "appetitive_scale": 1,
16
+ "aversive_scale": 1.0,
17
+ "decay_only_appetitive_scale": 0.35,
18
+ "ethanol_uptake_tau_s": 120,
19
+ "ethanol_clearance_tau_s": 300,
20
+ "training_exposure_s": 600,
21
+ "training_interval_s": 3000,
22
+ "conditioning_sessions": 3,
23
+ "biological_step_s": 60,
24
+ "delays_h": [
25
+ 0.5,
26
+ 3,
27
+ 6,
28
+ 12,
29
+ 24
30
+ ],
31
+ "conditions": [
32
+ "untrained",
33
+ "paired",
34
+ "unpaired",
35
+ "dan_silenced",
36
+ "dan_acquisition",
37
+ "dan_consolidation"
38
+ ],
39
+ "models": [
40
+ "consolidating",
41
+ "decay_only"
42
+ ],
43
+ "learning_dan_dependence": false,
44
+ "calibration_delays_h": [
45
+ 0.5,
46
+ 24
47
+ ],
48
+ "prediction_delays_h": [
49
+ 3,
50
+ 6,
51
+ 12
52
+ ],
53
+ "motor_value_gain": 4.0,
54
+ "innate_value": 0.15,
55
+ "test_duration_s": 120.0,
56
+ "physics_dt_s": 0.0001,
57
+ "control_dt_s": 0.02,
58
+ "base_drive": 1,
59
+ "max_turn": 0.6,
60
+ "turn_gain": 120.0,
61
+ "motor_noise_sd": 0.18,
62
+ "source_x_mm": 19,
63
+ "source_y_mm": 9,
64
+ "odor_length_mm": 40.0,
65
+ "choice_x_mm": 12,
66
+ "choice_abs_y_mm": 2.5,
67
+ "odor_noise_sd": 0.0008,
68
+ "video_fps": 25,
69
+ "protocol": "paper_paired",
70
+ "center_motor_readout": true,
71
+ "adaptation_epsilon": 0.01,
72
+ "motor_denominator_floor": 0.05,
73
+ "stem_mm": 30.0,
74
+ "arm_mm": 60.0,
75
+ "corridor_width_mm": 10.0,
76
+ "collection_depth_mm": 8.0,
77
+ "capture_policy": "absorbing collection region; approximation to collection vials",
78
+ "readout": "functional concentration-normalized population contrast",
79
+ "fitted_delays_h": [
80
+ 0.5,
81
+ 24.0
82
+ ],
83
+ "held_out_delays_h": [
84
+ 3.0,
85
+ 6.0,
86
+ 12.0,
87
+ 15.0,
88
+ 48.0
89
+ ],
90
+ "individual_controller_v4": true,
91
+ "behavioral_gain": 50.0,
92
+ "gait_seed": 184405429
93
+ },
94
+ "phenotype": {
95
+ "gait_seed": 184405429,
96
+ "sensory_seed": 3494332814,
97
+ "motor_seed": 1328260653,
98
+ "heading_seed": 1687718103,
99
+ "motor_noise_sd": 0.23482897879719472
100
+ },
101
+ "learning_gain": 0.9649774735991938,
102
+ "seed": 2079302979
103
+ }
raw/v4b/validation/unpaired/0.5h/rep01_odor0_side1/learning_history.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8d9504b7dac00d0179902a92bd7b39dcf13f6f54bbf7a18169b5f5dc015b328e
3
+ size 2445949