Preserve remaining raw simulation records batch 3
Browse files- raw/v4b/validation/paired/24h/rep02_odor0_side1/learning_states.npz +3 -0
- raw/v4b/validation/paired/24h/rep02_odor0_side1/physics_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep02_odor0_side1/replay.npz +3 -0
- raw/v4b/validation/paired/24h/rep02_odor0_side1/state_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep02_odor0_side1/summary.json +29 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side0/individual_configuration.json +103 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side0/learning_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side0/learning_states.npz +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side0/physics_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side0/replay.npz +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side0/state_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side0/summary.json +29 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side1/individual_configuration.json +103 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side1/learning_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side1/learning_states.npz +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side1/physics_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side1/replay.npz +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side1/state_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep02_odor1_side1/summary.json +29 -0
- raw/v4b/validation/paired/24h/rep03_odor0_side0/individual_configuration.json +103 -0
- raw/v4b/validation/paired/24h/rep03_odor0_side0/learning_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep03_odor0_side0/learning_states.npz +3 -0
- raw/v4b/validation/paired/24h/rep03_odor0_side0/physics_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep03_odor0_side0/replay.npz +3 -0
- raw/v4b/validation/paired/24h/rep03_odor0_side0/state_history.parquet +3 -0
- raw/v4b/validation/paired/24h/rep03_odor0_side0/summary.json +29 -0
- raw/v4b/validation/paired/24h/rep03_odor0_side1/individual_configuration.json +103 -0
- raw/v4b/validation/paired/24h/rep03_odor0_side1/learning_history.parquet +3 -0
raw/v4b/validation/paired/24h/rep02_odor0_side1/learning_states.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3d5de09b69eecea77d1e1551045639cce7cccde85472051fad0634ca4a5c77de
|
| 3 |
+
size 134186
|
raw/v4b/validation/paired/24h/rep02_odor0_side1/physics_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:060df71ace141acff8118eb17f7dc4414bebbf79b5d312e0d4ee6cc3b2c23d3a
|
| 3 |
+
size 2417717
|
raw/v4b/validation/paired/24h/rep02_odor0_side1/replay.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:32bb3dc19f48c2cb7cf672f1e3805debb686ace642eac60ff56fc4423485d3f0
|
| 3 |
+
size 82110
|
raw/v4b/validation/paired/24h/rep02_odor0_side1/state_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ab0ac44605266e217b0b801a437b6210da9a2cf704d8ba58b281812a71f4d06c
|
| 3 |
+
size 368118
|
raw/v4b/validation/paired/24h/rep02_odor0_side1/summary.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"model": "consolidating",
|
| 3 |
+
"condition": "paired",
|
| 4 |
+
"delay_h": 24.0,
|
| 5 |
+
"replicate": 2,
|
| 6 |
+
"paired_odor": "A",
|
| 7 |
+
"b_left": true,
|
| 8 |
+
"fly_id": "consolidating_paired_24h_2_0_1",
|
| 9 |
+
"gait_seed": 557036114,
|
| 10 |
+
"sensory_seed": 2661071875,
|
| 11 |
+
"motor_seed": 2266824410,
|
| 12 |
+
"heading_seed": 82616730,
|
| 13 |
+
"motor_noise_sd": 0.18478524229834323,
|
| 14 |
+
"seed": 2881849080,
|
| 15 |
+
"learning_gain": 1.1068857756791153,
|
| 16 |
+
"choice": "A",
|
| 17 |
+
"choice_latency_s": 5.739999999999999,
|
| 18 |
+
"termination": "test_window_complete",
|
| 19 |
+
"score": 1,
|
| 20 |
+
"neural_value_difference": 0.3551339367929191,
|
| 21 |
+
"physics_ticks": 57400,
|
| 22 |
+
"control_rows": 6000,
|
| 23 |
+
"assay_duration_s": 120.0,
|
| 24 |
+
"test_start_biological_s": 96000.0,
|
| 25 |
+
"captured": true,
|
| 26 |
+
"physical_time_s": 5.74,
|
| 27 |
+
"capture_policy": "absorbing collection region; approximation to collection vials",
|
| 28 |
+
"diagnostic": false
|
| 29 |
+
}
|
raw/v4b/validation/paired/24h/rep02_odor1_side0/individual_configuration.json
ADDED
|
@@ -0,0 +1,103 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": {
|
| 3 |
+
"schema_version": 1,
|
| 4 |
+
"dataset": "FlyWire FAFB v783",
|
| 5 |
+
"master_seed": 920618,
|
| 6 |
+
"odor_encoding_seed": 7331,
|
| 7 |
+
"min_pair_synapses": 5,
|
| 8 |
+
"kc_threshold": 0.15,
|
| 9 |
+
"kc_sparsity_quantile": 0.85,
|
| 10 |
+
"odor_sparsity": 0.2,
|
| 11 |
+
"acquisition_per_s": 0.0015,
|
| 12 |
+
"aversive_tau_h": 4.0,
|
| 13 |
+
"consolidation_tau_h": 12.0,
|
| 14 |
+
"long_memory_tau_h": 168,
|
| 15 |
+
"appetitive_scale": 1,
|
| 16 |
+
"aversive_scale": 1.0,
|
| 17 |
+
"decay_only_appetitive_scale": 0.35,
|
| 18 |
+
"ethanol_uptake_tau_s": 120,
|
| 19 |
+
"ethanol_clearance_tau_s": 300,
|
| 20 |
+
"training_exposure_s": 600,
|
| 21 |
+
"training_interval_s": 3000,
|
| 22 |
+
"conditioning_sessions": 3,
|
| 23 |
+
"biological_step_s": 60,
|
| 24 |
+
"delays_h": [
|
| 25 |
+
0.5,
|
| 26 |
+
3,
|
| 27 |
+
6,
|
| 28 |
+
12,
|
| 29 |
+
24
|
| 30 |
+
],
|
| 31 |
+
"conditions": [
|
| 32 |
+
"untrained",
|
| 33 |
+
"paired",
|
| 34 |
+
"unpaired",
|
| 35 |
+
"dan_silenced",
|
| 36 |
+
"dan_acquisition",
|
| 37 |
+
"dan_consolidation"
|
| 38 |
+
],
|
| 39 |
+
"models": [
|
| 40 |
+
"consolidating",
|
| 41 |
+
"decay_only"
|
| 42 |
+
],
|
| 43 |
+
"learning_dan_dependence": false,
|
| 44 |
+
"calibration_delays_h": [
|
| 45 |
+
0.5,
|
| 46 |
+
24
|
| 47 |
+
],
|
| 48 |
+
"prediction_delays_h": [
|
| 49 |
+
3,
|
| 50 |
+
6,
|
| 51 |
+
12
|
| 52 |
+
],
|
| 53 |
+
"motor_value_gain": 4.0,
|
| 54 |
+
"innate_value": 0.15,
|
| 55 |
+
"test_duration_s": 120.0,
|
| 56 |
+
"physics_dt_s": 0.0001,
|
| 57 |
+
"control_dt_s": 0.02,
|
| 58 |
+
"base_drive": 1,
|
| 59 |
+
"max_turn": 0.6,
|
| 60 |
+
"turn_gain": 120.0,
|
| 61 |
+
"motor_noise_sd": 0.18,
|
| 62 |
+
"source_x_mm": 19,
|
| 63 |
+
"source_y_mm": 9,
|
| 64 |
+
"odor_length_mm": 40.0,
|
| 65 |
+
"choice_x_mm": 12,
|
| 66 |
+
"choice_abs_y_mm": 2.5,
|
| 67 |
+
"odor_noise_sd": 0.0008,
|
| 68 |
+
"video_fps": 25,
|
| 69 |
+
"protocol": "paper_paired",
|
| 70 |
+
"center_motor_readout": true,
|
| 71 |
+
"adaptation_epsilon": 0.01,
|
| 72 |
+
"motor_denominator_floor": 0.05,
|
| 73 |
+
"stem_mm": 30.0,
|
| 74 |
+
"arm_mm": 60.0,
|
| 75 |
+
"corridor_width_mm": 10.0,
|
| 76 |
+
"collection_depth_mm": 8.0,
|
| 77 |
+
"capture_policy": "absorbing collection region; approximation to collection vials",
|
| 78 |
+
"readout": "functional concentration-normalized population contrast",
|
| 79 |
+
"fitted_delays_h": [
|
| 80 |
+
0.5,
|
| 81 |
+
24.0
|
| 82 |
+
],
|
| 83 |
+
"held_out_delays_h": [
|
| 84 |
+
3.0,
|
| 85 |
+
6.0,
|
| 86 |
+
12.0,
|
| 87 |
+
15.0,
|
| 88 |
+
48.0
|
| 89 |
+
],
|
| 90 |
+
"individual_controller_v4": true,
|
| 91 |
+
"behavioral_gain": 50.0,
|
| 92 |
+
"gait_seed": 32395505
|
| 93 |
+
},
|
| 94 |
+
"phenotype": {
|
| 95 |
+
"gait_seed": 32395505,
|
| 96 |
+
"sensory_seed": 3877999672,
|
| 97 |
+
"motor_seed": 2477371533,
|
| 98 |
+
"heading_seed": 2540307966,
|
| 99 |
+
"motor_noise_sd": 0.13479625400174425
|
| 100 |
+
},
|
| 101 |
+
"learning_gain": 0.9795603331557364,
|
| 102 |
+
"seed": 1290379729
|
| 103 |
+
}
|
raw/v4b/validation/paired/24h/rep02_odor1_side0/learning_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ec172468a956faced2442945ea34ba602b9a98838daf87912326c085d9f79fec
|
| 3 |
+
size 8221017
|
raw/v4b/validation/paired/24h/rep02_odor1_side0/learning_states.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c808dc36f3d7f52bf4813c9dad2107f6b633c3b58f80600ed4cf7bb9e11e8433
|
| 3 |
+
size 134239
|
raw/v4b/validation/paired/24h/rep02_odor1_side0/physics_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:79b1973696abe9c3888ce3757e0ce4bace3c139d729b7e3a17769361a515224e
|
| 3 |
+
size 2404552
|
raw/v4b/validation/paired/24h/rep02_odor1_side0/replay.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:20eb4524037eff684336bcabd1703c40d426519ed76bde6df38774889601a679
|
| 3 |
+
size 81510
|
raw/v4b/validation/paired/24h/rep02_odor1_side0/state_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d7e0f472c4f25db6dd129c52589b732aa94b90d88c475e888bfd23423beeb1e5
|
| 3 |
+
size 368295
|
raw/v4b/validation/paired/24h/rep02_odor1_side0/summary.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"model": "consolidating",
|
| 3 |
+
"condition": "paired",
|
| 4 |
+
"delay_h": 24.0,
|
| 5 |
+
"replicate": 2,
|
| 6 |
+
"paired_odor": "B",
|
| 7 |
+
"b_left": false,
|
| 8 |
+
"fly_id": "consolidating_paired_24h_2_1_0",
|
| 9 |
+
"gait_seed": 32395505,
|
| 10 |
+
"sensory_seed": 3877999672,
|
| 11 |
+
"motor_seed": 2477371533,
|
| 12 |
+
"heading_seed": 2540307966,
|
| 13 |
+
"motor_noise_sd": 0.13479625400174425,
|
| 14 |
+
"seed": 1290379729,
|
| 15 |
+
"learning_gain": 0.9795603331557364,
|
| 16 |
+
"choice": "B",
|
| 17 |
+
"choice_latency_s": 5.7102,
|
| 18 |
+
"termination": "test_window_complete",
|
| 19 |
+
"score": 1,
|
| 20 |
+
"neural_value_difference": 0.34082807989663594,
|
| 21 |
+
"physics_ticks": 57102,
|
| 22 |
+
"control_rows": 6000,
|
| 23 |
+
"assay_duration_s": 120.0,
|
| 24 |
+
"test_start_biological_s": 96000.0,
|
| 25 |
+
"captured": true,
|
| 26 |
+
"physical_time_s": 5.7102,
|
| 27 |
+
"capture_policy": "absorbing collection region; approximation to collection vials",
|
| 28 |
+
"diagnostic": false
|
| 29 |
+
}
|
raw/v4b/validation/paired/24h/rep02_odor1_side1/individual_configuration.json
ADDED
|
@@ -0,0 +1,103 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": {
|
| 3 |
+
"schema_version": 1,
|
| 4 |
+
"dataset": "FlyWire FAFB v783",
|
| 5 |
+
"master_seed": 920618,
|
| 6 |
+
"odor_encoding_seed": 7331,
|
| 7 |
+
"min_pair_synapses": 5,
|
| 8 |
+
"kc_threshold": 0.15,
|
| 9 |
+
"kc_sparsity_quantile": 0.85,
|
| 10 |
+
"odor_sparsity": 0.2,
|
| 11 |
+
"acquisition_per_s": 0.0015,
|
| 12 |
+
"aversive_tau_h": 4.0,
|
| 13 |
+
"consolidation_tau_h": 12.0,
|
| 14 |
+
"long_memory_tau_h": 168,
|
| 15 |
+
"appetitive_scale": 1,
|
| 16 |
+
"aversive_scale": 1.0,
|
| 17 |
+
"decay_only_appetitive_scale": 0.35,
|
| 18 |
+
"ethanol_uptake_tau_s": 120,
|
| 19 |
+
"ethanol_clearance_tau_s": 300,
|
| 20 |
+
"training_exposure_s": 600,
|
| 21 |
+
"training_interval_s": 3000,
|
| 22 |
+
"conditioning_sessions": 3,
|
| 23 |
+
"biological_step_s": 60,
|
| 24 |
+
"delays_h": [
|
| 25 |
+
0.5,
|
| 26 |
+
3,
|
| 27 |
+
6,
|
| 28 |
+
12,
|
| 29 |
+
24
|
| 30 |
+
],
|
| 31 |
+
"conditions": [
|
| 32 |
+
"untrained",
|
| 33 |
+
"paired",
|
| 34 |
+
"unpaired",
|
| 35 |
+
"dan_silenced",
|
| 36 |
+
"dan_acquisition",
|
| 37 |
+
"dan_consolidation"
|
| 38 |
+
],
|
| 39 |
+
"models": [
|
| 40 |
+
"consolidating",
|
| 41 |
+
"decay_only"
|
| 42 |
+
],
|
| 43 |
+
"learning_dan_dependence": false,
|
| 44 |
+
"calibration_delays_h": [
|
| 45 |
+
0.5,
|
| 46 |
+
24
|
| 47 |
+
],
|
| 48 |
+
"prediction_delays_h": [
|
| 49 |
+
3,
|
| 50 |
+
6,
|
| 51 |
+
12
|
| 52 |
+
],
|
| 53 |
+
"motor_value_gain": 4.0,
|
| 54 |
+
"innate_value": 0.15,
|
| 55 |
+
"test_duration_s": 120.0,
|
| 56 |
+
"physics_dt_s": 0.0001,
|
| 57 |
+
"control_dt_s": 0.02,
|
| 58 |
+
"base_drive": 1,
|
| 59 |
+
"max_turn": 0.6,
|
| 60 |
+
"turn_gain": 120.0,
|
| 61 |
+
"motor_noise_sd": 0.18,
|
| 62 |
+
"source_x_mm": 19,
|
| 63 |
+
"source_y_mm": 9,
|
| 64 |
+
"odor_length_mm": 40.0,
|
| 65 |
+
"choice_x_mm": 12,
|
| 66 |
+
"choice_abs_y_mm": 2.5,
|
| 67 |
+
"odor_noise_sd": 0.0008,
|
| 68 |
+
"video_fps": 25,
|
| 69 |
+
"protocol": "paper_paired",
|
| 70 |
+
"center_motor_readout": true,
|
| 71 |
+
"adaptation_epsilon": 0.01,
|
| 72 |
+
"motor_denominator_floor": 0.05,
|
| 73 |
+
"stem_mm": 30.0,
|
| 74 |
+
"arm_mm": 60.0,
|
| 75 |
+
"corridor_width_mm": 10.0,
|
| 76 |
+
"collection_depth_mm": 8.0,
|
| 77 |
+
"capture_policy": "absorbing collection region; approximation to collection vials",
|
| 78 |
+
"readout": "functional concentration-normalized population contrast",
|
| 79 |
+
"fitted_delays_h": [
|
| 80 |
+
0.5,
|
| 81 |
+
24.0
|
| 82 |
+
],
|
| 83 |
+
"held_out_delays_h": [
|
| 84 |
+
3.0,
|
| 85 |
+
6.0,
|
| 86 |
+
12.0,
|
| 87 |
+
15.0,
|
| 88 |
+
48.0
|
| 89 |
+
],
|
| 90 |
+
"individual_controller_v4": true,
|
| 91 |
+
"behavioral_gain": 50.0,
|
| 92 |
+
"gait_seed": 220798512
|
| 93 |
+
},
|
| 94 |
+
"phenotype": {
|
| 95 |
+
"gait_seed": 220798512,
|
| 96 |
+
"sensory_seed": 3978528219,
|
| 97 |
+
"motor_seed": 1507770364,
|
| 98 |
+
"heading_seed": 4037712224,
|
| 99 |
+
"motor_noise_sd": 0.16946607007877226
|
| 100 |
+
},
|
| 101 |
+
"learning_gain": 1.0716220468006004,
|
| 102 |
+
"seed": 2539879688
|
| 103 |
+
}
|
raw/v4b/validation/paired/24h/rep02_odor1_side1/learning_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:cd37947e0f162b141d5de00df66d05f817898fd8d0bfc189edc0afd778c50222
|
| 3 |
+
size 8231046
|
raw/v4b/validation/paired/24h/rep02_odor1_side1/learning_states.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:e721b4a2b84214fdaa11a5f8bebc8af38a1ed8e98146d685cc19d5c77eaed886
|
| 3 |
+
size 134108
|
raw/v4b/validation/paired/24h/rep02_odor1_side1/physics_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:4d6b50a0e86999660283ff5f85729595c0f58950a3c2e2a6a5dc6f88733e88c9
|
| 3 |
+
size 36349688
|
raw/v4b/validation/paired/24h/rep02_odor1_side1/replay.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0c782ed1415f8033f9580eeba55c37fc74993f3c21a1e8c5174fad0ad5c530d1
|
| 3 |
+
size 1626336
|
raw/v4b/validation/paired/24h/rep02_odor1_side1/state_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6d47776d1be9cdf3c8eedd27b1eec22c75091c650aa620730272e97289c8c948
|
| 3 |
+
size 1004689
|
raw/v4b/validation/paired/24h/rep02_odor1_side1/summary.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"model": "consolidating",
|
| 3 |
+
"condition": "paired",
|
| 4 |
+
"delay_h": 24.0,
|
| 5 |
+
"replicate": 2,
|
| 6 |
+
"paired_odor": "B",
|
| 7 |
+
"b_left": true,
|
| 8 |
+
"fly_id": "consolidating_paired_24h_2_1_1",
|
| 9 |
+
"gait_seed": 220798512,
|
| 10 |
+
"sensory_seed": 3978528219,
|
| 11 |
+
"motor_seed": 1507770364,
|
| 12 |
+
"heading_seed": 4037712224,
|
| 13 |
+
"motor_noise_sd": 0.16946607007877226,
|
| 14 |
+
"seed": 2539879688,
|
| 15 |
+
"learning_gain": 1.0716220468006004,
|
| 16 |
+
"choice": "none",
|
| 17 |
+
"choice_latency_s": null,
|
| 18 |
+
"termination": "test_window_complete",
|
| 19 |
+
"score": 0,
|
| 20 |
+
"neural_value_difference": 0.36157592031827035,
|
| 21 |
+
"physics_ticks": 1200000,
|
| 22 |
+
"control_rows": 6000,
|
| 23 |
+
"assay_duration_s": 120.0,
|
| 24 |
+
"test_start_biological_s": 96000.0,
|
| 25 |
+
"captured": false,
|
| 26 |
+
"physical_time_s": 120.0,
|
| 27 |
+
"capture_policy": "absorbing collection region; approximation to collection vials",
|
| 28 |
+
"diagnostic": false
|
| 29 |
+
}
|
raw/v4b/validation/paired/24h/rep03_odor0_side0/individual_configuration.json
ADDED
|
@@ -0,0 +1,103 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": {
|
| 3 |
+
"schema_version": 1,
|
| 4 |
+
"dataset": "FlyWire FAFB v783",
|
| 5 |
+
"master_seed": 920618,
|
| 6 |
+
"odor_encoding_seed": 7331,
|
| 7 |
+
"min_pair_synapses": 5,
|
| 8 |
+
"kc_threshold": 0.15,
|
| 9 |
+
"kc_sparsity_quantile": 0.85,
|
| 10 |
+
"odor_sparsity": 0.2,
|
| 11 |
+
"acquisition_per_s": 0.0015,
|
| 12 |
+
"aversive_tau_h": 4.0,
|
| 13 |
+
"consolidation_tau_h": 12.0,
|
| 14 |
+
"long_memory_tau_h": 168,
|
| 15 |
+
"appetitive_scale": 1,
|
| 16 |
+
"aversive_scale": 1.0,
|
| 17 |
+
"decay_only_appetitive_scale": 0.35,
|
| 18 |
+
"ethanol_uptake_tau_s": 120,
|
| 19 |
+
"ethanol_clearance_tau_s": 300,
|
| 20 |
+
"training_exposure_s": 600,
|
| 21 |
+
"training_interval_s": 3000,
|
| 22 |
+
"conditioning_sessions": 3,
|
| 23 |
+
"biological_step_s": 60,
|
| 24 |
+
"delays_h": [
|
| 25 |
+
0.5,
|
| 26 |
+
3,
|
| 27 |
+
6,
|
| 28 |
+
12,
|
| 29 |
+
24
|
| 30 |
+
],
|
| 31 |
+
"conditions": [
|
| 32 |
+
"untrained",
|
| 33 |
+
"paired",
|
| 34 |
+
"unpaired",
|
| 35 |
+
"dan_silenced",
|
| 36 |
+
"dan_acquisition",
|
| 37 |
+
"dan_consolidation"
|
| 38 |
+
],
|
| 39 |
+
"models": [
|
| 40 |
+
"consolidating",
|
| 41 |
+
"decay_only"
|
| 42 |
+
],
|
| 43 |
+
"learning_dan_dependence": false,
|
| 44 |
+
"calibration_delays_h": [
|
| 45 |
+
0.5,
|
| 46 |
+
24
|
| 47 |
+
],
|
| 48 |
+
"prediction_delays_h": [
|
| 49 |
+
3,
|
| 50 |
+
6,
|
| 51 |
+
12
|
| 52 |
+
],
|
| 53 |
+
"motor_value_gain": 4.0,
|
| 54 |
+
"innate_value": 0.15,
|
| 55 |
+
"test_duration_s": 120.0,
|
| 56 |
+
"physics_dt_s": 0.0001,
|
| 57 |
+
"control_dt_s": 0.02,
|
| 58 |
+
"base_drive": 1,
|
| 59 |
+
"max_turn": 0.6,
|
| 60 |
+
"turn_gain": 120.0,
|
| 61 |
+
"motor_noise_sd": 0.18,
|
| 62 |
+
"source_x_mm": 19,
|
| 63 |
+
"source_y_mm": 9,
|
| 64 |
+
"odor_length_mm": 40.0,
|
| 65 |
+
"choice_x_mm": 12,
|
| 66 |
+
"choice_abs_y_mm": 2.5,
|
| 67 |
+
"odor_noise_sd": 0.0008,
|
| 68 |
+
"video_fps": 25,
|
| 69 |
+
"protocol": "paper_paired",
|
| 70 |
+
"center_motor_readout": true,
|
| 71 |
+
"adaptation_epsilon": 0.01,
|
| 72 |
+
"motor_denominator_floor": 0.05,
|
| 73 |
+
"stem_mm": 30.0,
|
| 74 |
+
"arm_mm": 60.0,
|
| 75 |
+
"corridor_width_mm": 10.0,
|
| 76 |
+
"collection_depth_mm": 8.0,
|
| 77 |
+
"capture_policy": "absorbing collection region; approximation to collection vials",
|
| 78 |
+
"readout": "functional concentration-normalized population contrast",
|
| 79 |
+
"fitted_delays_h": [
|
| 80 |
+
0.5,
|
| 81 |
+
24.0
|
| 82 |
+
],
|
| 83 |
+
"held_out_delays_h": [
|
| 84 |
+
3.0,
|
| 85 |
+
6.0,
|
| 86 |
+
12.0,
|
| 87 |
+
15.0,
|
| 88 |
+
48.0
|
| 89 |
+
],
|
| 90 |
+
"individual_controller_v4": true,
|
| 91 |
+
"behavioral_gain": 50.0,
|
| 92 |
+
"gait_seed": 1936804421
|
| 93 |
+
},
|
| 94 |
+
"phenotype": {
|
| 95 |
+
"gait_seed": 1936804421,
|
| 96 |
+
"sensory_seed": 3448212116,
|
| 97 |
+
"motor_seed": 387887564,
|
| 98 |
+
"heading_seed": 979948553,
|
| 99 |
+
"motor_noise_sd": 0.16652488174928562
|
| 100 |
+
},
|
| 101 |
+
"learning_gain": 1.1278916036072808,
|
| 102 |
+
"seed": 3006085127
|
| 103 |
+
}
|
raw/v4b/validation/paired/24h/rep03_odor0_side0/learning_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:08a4ed862db991f22d697dc5881642aa510aac8bc4abae478c2323bbca3e4870
|
| 3 |
+
size 8227828
|
raw/v4b/validation/paired/24h/rep03_odor0_side0/learning_states.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:51497ca8822438f37ef6fa6020360887c8fcfe5622654b4c39b796b0fed9cb66
|
| 3 |
+
size 134103
|
raw/v4b/validation/paired/24h/rep03_odor0_side0/physics_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d75e25d0350358f529324444e47df9cdc698aeaa70f5e3fed1a3c528cb06afdb
|
| 3 |
+
size 2413103
|
raw/v4b/validation/paired/24h/rep03_odor0_side0/replay.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7216aa669900b45c1acb210703fb4a51a48440195a2ef10c1ba0466b5ea49762
|
| 3 |
+
size 82101
|
raw/v4b/validation/paired/24h/rep03_odor0_side0/state_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:14e704026263a884ee30516976ff1f0e170aa3295294a9caf6ae87735d8a580c
|
| 3 |
+
size 368669
|
raw/v4b/validation/paired/24h/rep03_odor0_side0/summary.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"model": "consolidating",
|
| 3 |
+
"condition": "paired",
|
| 4 |
+
"delay_h": 24.0,
|
| 5 |
+
"replicate": 3,
|
| 6 |
+
"paired_odor": "A",
|
| 7 |
+
"b_left": false,
|
| 8 |
+
"fly_id": "consolidating_paired_24h_3_0_0",
|
| 9 |
+
"gait_seed": 1936804421,
|
| 10 |
+
"sensory_seed": 3448212116,
|
| 11 |
+
"motor_seed": 387887564,
|
| 12 |
+
"heading_seed": 979948553,
|
| 13 |
+
"motor_noise_sd": 0.16652488174928562,
|
| 14 |
+
"seed": 3006085127,
|
| 15 |
+
"learning_gain": 1.1278916036072808,
|
| 16 |
+
"choice": "A",
|
| 17 |
+
"choice_latency_s": 5.729299999999999,
|
| 18 |
+
"termination": "test_window_complete",
|
| 19 |
+
"score": 1,
|
| 20 |
+
"neural_value_difference": 0.35967640151400504,
|
| 21 |
+
"physics_ticks": 57293,
|
| 22 |
+
"control_rows": 6000,
|
| 23 |
+
"assay_duration_s": 120.0,
|
| 24 |
+
"test_start_biological_s": 96000.0,
|
| 25 |
+
"captured": true,
|
| 26 |
+
"physical_time_s": 5.7293,
|
| 27 |
+
"capture_policy": "absorbing collection region; approximation to collection vials",
|
| 28 |
+
"diagnostic": false
|
| 29 |
+
}
|
raw/v4b/validation/paired/24h/rep03_odor0_side1/individual_configuration.json
ADDED
|
@@ -0,0 +1,103 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"config": {
|
| 3 |
+
"schema_version": 1,
|
| 4 |
+
"dataset": "FlyWire FAFB v783",
|
| 5 |
+
"master_seed": 920618,
|
| 6 |
+
"odor_encoding_seed": 7331,
|
| 7 |
+
"min_pair_synapses": 5,
|
| 8 |
+
"kc_threshold": 0.15,
|
| 9 |
+
"kc_sparsity_quantile": 0.85,
|
| 10 |
+
"odor_sparsity": 0.2,
|
| 11 |
+
"acquisition_per_s": 0.0015,
|
| 12 |
+
"aversive_tau_h": 4.0,
|
| 13 |
+
"consolidation_tau_h": 12.0,
|
| 14 |
+
"long_memory_tau_h": 168,
|
| 15 |
+
"appetitive_scale": 1,
|
| 16 |
+
"aversive_scale": 1.0,
|
| 17 |
+
"decay_only_appetitive_scale": 0.35,
|
| 18 |
+
"ethanol_uptake_tau_s": 120,
|
| 19 |
+
"ethanol_clearance_tau_s": 300,
|
| 20 |
+
"training_exposure_s": 600,
|
| 21 |
+
"training_interval_s": 3000,
|
| 22 |
+
"conditioning_sessions": 3,
|
| 23 |
+
"biological_step_s": 60,
|
| 24 |
+
"delays_h": [
|
| 25 |
+
0.5,
|
| 26 |
+
3,
|
| 27 |
+
6,
|
| 28 |
+
12,
|
| 29 |
+
24
|
| 30 |
+
],
|
| 31 |
+
"conditions": [
|
| 32 |
+
"untrained",
|
| 33 |
+
"paired",
|
| 34 |
+
"unpaired",
|
| 35 |
+
"dan_silenced",
|
| 36 |
+
"dan_acquisition",
|
| 37 |
+
"dan_consolidation"
|
| 38 |
+
],
|
| 39 |
+
"models": [
|
| 40 |
+
"consolidating",
|
| 41 |
+
"decay_only"
|
| 42 |
+
],
|
| 43 |
+
"learning_dan_dependence": false,
|
| 44 |
+
"calibration_delays_h": [
|
| 45 |
+
0.5,
|
| 46 |
+
24
|
| 47 |
+
],
|
| 48 |
+
"prediction_delays_h": [
|
| 49 |
+
3,
|
| 50 |
+
6,
|
| 51 |
+
12
|
| 52 |
+
],
|
| 53 |
+
"motor_value_gain": 4.0,
|
| 54 |
+
"innate_value": 0.15,
|
| 55 |
+
"test_duration_s": 120.0,
|
| 56 |
+
"physics_dt_s": 0.0001,
|
| 57 |
+
"control_dt_s": 0.02,
|
| 58 |
+
"base_drive": 1,
|
| 59 |
+
"max_turn": 0.6,
|
| 60 |
+
"turn_gain": 120.0,
|
| 61 |
+
"motor_noise_sd": 0.18,
|
| 62 |
+
"source_x_mm": 19,
|
| 63 |
+
"source_y_mm": 9,
|
| 64 |
+
"odor_length_mm": 40.0,
|
| 65 |
+
"choice_x_mm": 12,
|
| 66 |
+
"choice_abs_y_mm": 2.5,
|
| 67 |
+
"odor_noise_sd": 0.0008,
|
| 68 |
+
"video_fps": 25,
|
| 69 |
+
"protocol": "paper_paired",
|
| 70 |
+
"center_motor_readout": true,
|
| 71 |
+
"adaptation_epsilon": 0.01,
|
| 72 |
+
"motor_denominator_floor": 0.05,
|
| 73 |
+
"stem_mm": 30.0,
|
| 74 |
+
"arm_mm": 60.0,
|
| 75 |
+
"corridor_width_mm": 10.0,
|
| 76 |
+
"collection_depth_mm": 8.0,
|
| 77 |
+
"capture_policy": "absorbing collection region; approximation to collection vials",
|
| 78 |
+
"readout": "functional concentration-normalized population contrast",
|
| 79 |
+
"fitted_delays_h": [
|
| 80 |
+
0.5,
|
| 81 |
+
24.0
|
| 82 |
+
],
|
| 83 |
+
"held_out_delays_h": [
|
| 84 |
+
3.0,
|
| 85 |
+
6.0,
|
| 86 |
+
12.0,
|
| 87 |
+
15.0,
|
| 88 |
+
48.0
|
| 89 |
+
],
|
| 90 |
+
"individual_controller_v4": true,
|
| 91 |
+
"behavioral_gain": 50.0,
|
| 92 |
+
"gait_seed": 1487496223
|
| 93 |
+
},
|
| 94 |
+
"phenotype": {
|
| 95 |
+
"gait_seed": 1487496223,
|
| 96 |
+
"sensory_seed": 2167369632,
|
| 97 |
+
"motor_seed": 3579063225,
|
| 98 |
+
"heading_seed": 1837198156,
|
| 99 |
+
"motor_noise_sd": 0.18403226163279918
|
| 100 |
+
},
|
| 101 |
+
"learning_gain": 1.1653312697021863,
|
| 102 |
+
"seed": 172432745
|
| 103 |
+
}
|
raw/v4b/validation/paired/24h/rep03_odor0_side1/learning_history.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:750736220fc9693ad65dbbf3c12b8519aaf44e13e40a72db99a26178b81b859f
|
| 3 |
+
size 8215220
|