Fix links to the TraitGym eval scripts

README.md

@@ -39,7 +39,7 @@ The variants, labels and matched controls are **identical** to the original `son
 | `pos` | 1-indexed hg38 position |
 | `ref`, `alt` | single bases (SNVs only) |
 | `label` | int 0/1 (1 = causal/positive, 0 = matched control) |
-| `class` | `"LOF"` (label=1) or `"FUNC/INT"` (label=0) — added so the standard `brca_eval.py` AUROC code path works without changes |
+| `class` | `"LOF"` (label=1) or `"FUNC/INT"` (label=0) — added so the standard `vep_eval.py` AUROC code path works without changes |
 | `consequence` | molecular consequence from the source dataset |
 | `tss_dist` | distance to nearest TSS |
 | `match_group` | matched-controls group ID (preserve from source) |
@@ -51,8 +51,8 @@ The variants, labels and matched controls are **identical** to the original `son
 Same recipe as our other VEP evals (BRCA1, BRCA2, ClinVar): `delta = LL(var_seq) − LL(ref_seq)` from a centered 8,192 bp window. Score per-variant; AUROC / AUPRC / `AUPRC_by_chrom_weighted_average` (the TraitGym leaderboard convention) against the binary label. Optional `--rev_comp_avg` averages the LLR computed on the forward window and on its reverse-complement, exactly as TraitGym does.
 
 Eval scripts:
-- [`reproduction-evo2-evals/brca/brca_eval.py`](https://github.com/huggingface/carbon/tree/evo2-evals/evaluation/reproduction-evo2-evals/brca/brca_eval.py) — gene-agnostic centered+full-LL eval
-- Sharded variant: [`reproduction-evo2-evals/traitgym/`](https://github.com/huggingface/carbon/tree/evo2-evals/evaluation/reproduction-evo2-evals/traitgym/) — array-job sharding for Evo2 7B+/40B
+- [`carbon/evaluation/vep_eval.py`](https://github.com/huggingface/carbon/blob/main/carbon/evaluation/vep_eval.py) — gene-agnostic centered+full-LL eval
+- Slurm launchers: [`carbon/evaluation/slurm/`](https://github.com/huggingface/carbon/tree/main/carbon/evaluation/slurm) — one `vep_traitgym.sbatch` per model, including Evo2 7B/20B/40B
 
 ## Citation