metadata
configs:
- config_name: chief_10x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/chief/10x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/chief/10x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/chief/10x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/chief/10x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/chief/10x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/chief/10x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/chief/10x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/chief/10x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/chief/10x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/chief/10x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/chief/10x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/chief/10x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/chief/10x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/chief/10x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/chief/10x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/chief/10x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/chief/10x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/chief/10x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/chief/10x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/chief/10x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/chief/10x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/chief/10x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/chief/10x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/chief/10x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/chief/10x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/chief/10x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/chief/10x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/chief/10x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/chief/10x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/chief/10x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/chief/10x/*.parquet
- config_name: conch_v1_10x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/conch_v1/10x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/conch_v1/10x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/conch_v1/10x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/conch_v1/10x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/conch_v1/10x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/conch_v1/10x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/conch_v1/10x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/conch_v1/10x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/conch_v1/10x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/conch_v1/10x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/conch_v1/10x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/conch_v1/10x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/conch_v1/10x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/conch_v1/10x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/conch_v1/10x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/conch_v1/10x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/conch_v1/10x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/conch_v1/10x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/conch_v1/10x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/conch_v1/10x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/conch_v1/10x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/conch_v1/10x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/conch_v1/10x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/conch_v1/10x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/conch_v1/10x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/conch_v1/10x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/conch_v1/10x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/conch_v1/10x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/conch_v1/10x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/conch_v1/10x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/conch_v1/10x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/conch_v1/10x/*.parquet
- config_name: conch_v1_20x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/conch_v1/20x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/conch_v1/20x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/conch_v1/20x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/conch_v1/20x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/conch_v1/20x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/conch_v1/20x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/conch_v1/20x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/conch_v1/20x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/conch_v1/20x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/conch_v1/20x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/conch_v1/20x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/conch_v1/20x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/conch_v1/20x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/conch_v1/20x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/conch_v1/20x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/conch_v1/20x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/conch_v1/20x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/conch_v1/20x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/conch_v1/20x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/conch_v1/20x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/conch_v1/20x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/conch_v1/20x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/conch_v1/20x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/conch_v1/20x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/conch_v1/20x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/conch_v1/20x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/conch_v1/20x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/conch_v1/20x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/conch_v1/20x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/conch_v1/20x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/conch_v1/20x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/conch_v1/20x/*.parquet
- config_name: conch_v1_5x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/conch_v1/5x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/conch_v1/5x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/conch_v1/5x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/conch_v1/5x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/conch_v1/5x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/conch_v1/5x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/conch_v1/5x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/conch_v1/5x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/conch_v1/5x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/conch_v1/5x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/conch_v1/5x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/conch_v1/5x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/conch_v1/5x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/conch_v1/5x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/conch_v1/5x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/conch_v1/5x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/conch_v1/5x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/conch_v1/5x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/conch_v1/5x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/conch_v1/5x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/conch_v1/5x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/conch_v1/5x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/conch_v1/5x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/conch_v1/5x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/conch_v1/5x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/conch_v1/5x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/conch_v1/5x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/conch_v1/5x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/conch_v1/5x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/conch_v1/5x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/conch_v1/5x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/conch_v1/5x/*.parquet
- config_name: ctranspath_10x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/ctranspath/10x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/ctranspath/10x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/ctranspath/10x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/ctranspath/10x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/ctranspath/10x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/ctranspath/10x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/ctranspath/10x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/ctranspath/10x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/ctranspath/10x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/ctranspath/10x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/ctranspath/10x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/ctranspath/10x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/ctranspath/10x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/ctranspath/10x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/ctranspath/10x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/ctranspath/10x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/ctranspath/10x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/ctranspath/10x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/ctranspath/10x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/ctranspath/10x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/ctranspath/10x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/ctranspath/10x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/ctranspath/10x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/ctranspath/10x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/ctranspath/10x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/ctranspath/10x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/ctranspath/10x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/ctranspath/10x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/ctranspath/10x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/ctranspath/10x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/ctranspath/10x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/ctranspath/10x/*.parquet
- config_name: ctranspath_20x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/ctranspath/20x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/ctranspath/20x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/ctranspath/20x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/ctranspath/20x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/ctranspath/20x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/ctranspath/20x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/ctranspath/20x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/ctranspath/20x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/ctranspath/20x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/ctranspath/20x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/ctranspath/20x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/ctranspath/20x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/ctranspath/20x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/ctranspath/20x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/ctranspath/20x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/ctranspath/20x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/ctranspath/20x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/ctranspath/20x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/ctranspath/20x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/ctranspath/20x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/ctranspath/20x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/ctranspath/20x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/ctranspath/20x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/ctranspath/20x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/ctranspath/20x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/ctranspath/20x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/ctranspath/20x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/ctranspath/20x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/ctranspath/20x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/ctranspath/20x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/ctranspath/20x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/ctranspath/20x/*.parquet
- config_name: ctranspath_5x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/ctranspath/5x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/ctranspath/5x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/ctranspath/5x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/ctranspath/5x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/ctranspath/5x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/ctranspath/5x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/ctranspath/5x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/ctranspath/5x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/ctranspath/5x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/ctranspath/5x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/ctranspath/5x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/ctranspath/5x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/ctranspath/5x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/ctranspath/5x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/ctranspath/5x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/ctranspath/5x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/ctranspath/5x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/ctranspath/5x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/ctranspath/5x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/ctranspath/5x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/ctranspath/5x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/ctranspath/5x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/ctranspath/5x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/ctranspath/5x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/ctranspath/5x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/ctranspath/5x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/ctranspath/5x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/ctranspath/5x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/ctranspath/5x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/ctranspath/5x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/ctranspath/5x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/ctranspath/5x/*.parquet
- config_name: gigapath_10x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/gigapath/10x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/gigapath/10x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/gigapath/10x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/gigapath/10x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/gigapath/10x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/gigapath/10x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/gigapath/10x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/gigapath/10x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/gigapath/10x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/gigapath/10x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/gigapath/10x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/gigapath/10x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/gigapath/10x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/gigapath/10x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/gigapath/10x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/gigapath/10x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/gigapath/10x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/gigapath/10x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/gigapath/10x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/gigapath/10x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/gigapath/10x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/gigapath/10x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/gigapath/10x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/gigapath/10x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/gigapath/10x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/gigapath/10x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/gigapath/10x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/gigapath/10x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/gigapath/10x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/gigapath/10x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/gigapath/10x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/gigapath/10x/*.parquet
- config_name: gigapath_20x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/gigapath/20x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/gigapath/20x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/gigapath/20x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/gigapath/20x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/gigapath/20x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/gigapath/20x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/gigapath/20x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/gigapath/20x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/gigapath/20x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/gigapath/20x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/gigapath/20x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/gigapath/20x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/gigapath/20x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/gigapath/20x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/gigapath/20x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/gigapath/20x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/gigapath/20x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/gigapath/20x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/gigapath/20x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/gigapath/20x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/gigapath/20x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/gigapath/20x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/gigapath/20x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/gigapath/20x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/gigapath/20x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/gigapath/20x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/gigapath/20x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/gigapath/20x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/gigapath/20x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/gigapath/20x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/gigapath/20x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/gigapath/20x/*.parquet
- config_name: gigapath_5x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/gigapath/5x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/gigapath/5x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/gigapath/5x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/gigapath/5x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/gigapath/5x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/gigapath/5x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/gigapath/5x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/gigapath/5x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/gigapath/5x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/gigapath/5x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/gigapath/5x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/gigapath/5x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/gigapath/5x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/gigapath/5x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/gigapath/5x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/gigapath/5x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/gigapath/5x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/gigapath/5x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/gigapath/5x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/gigapath/5x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/gigapath/5x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/gigapath/5x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/gigapath/5x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/gigapath/5x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/gigapath/5x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/gigapath/5x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/gigapath/5x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/gigapath/5x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/gigapath/5x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/gigapath/5x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/gigapath/5x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/gigapath/5x/*.parquet
- config_name: gigapath_slide_20x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/gigapath_slide/20x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/gigapath_slide/20x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/gigapath_slide/20x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/gigapath_slide/20x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/gigapath_slide/20x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/gigapath_slide/20x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/gigapath_slide/20x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/gigapath_slide/20x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/gigapath_slide/20x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/gigapath_slide/20x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/gigapath_slide/20x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/gigapath_slide/20x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/gigapath_slide/20x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/gigapath_slide/20x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/gigapath_slide/20x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/gigapath_slide/20x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/gigapath_slide/20x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/gigapath_slide/20x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/gigapath_slide/20x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/gigapath_slide/20x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/gigapath_slide/20x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/gigapath_slide/20x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/gigapath_slide/20x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/gigapath_slide/20x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/gigapath_slide/20x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/gigapath_slide/20x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/gigapath_slide/20x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/gigapath_slide/20x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/gigapath_slide/20x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/gigapath_slide/20x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/gigapath_slide/20x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/gigapath_slide/20x/*.parquet
- config_name: hibou_l_10x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/hibou_l/10x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/hibou_l/10x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/hibou_l/10x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/hibou_l/10x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/hibou_l/10x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/hibou_l/10x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/hibou_l/10x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/hibou_l/10x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/hibou_l/10x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/hibou_l/10x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/hibou_l/10x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/hibou_l/10x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/hibou_l/10x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/hibou_l/10x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/hibou_l/10x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/hibou_l/10x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/hibou_l/10x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/hibou_l/10x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/hibou_l/10x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/hibou_l/10x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/hibou_l/10x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/hibou_l/10x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/hibou_l/10x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/hibou_l/10x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/hibou_l/10x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/hibou_l/10x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/hibou_l/10x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/hibou_l/10x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/hibou_l/10x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/hibou_l/10x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/hibou_l/10x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/hibou_l/10x/*.parquet
- config_name: hibou_l_20x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/hibou_l/20x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/hibou_l/20x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/hibou_l/20x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/hibou_l/20x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/hibou_l/20x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/hibou_l/20x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/hibou_l/20x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/hibou_l/20x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/hibou_l/20x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/hibou_l/20x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/hibou_l/20x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/hibou_l/20x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/hibou_l/20x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/hibou_l/20x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/hibou_l/20x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/hibou_l/20x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/hibou_l/20x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/hibou_l/20x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/hibou_l/20x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/hibou_l/20x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/hibou_l/20x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/hibou_l/20x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/hibou_l/20x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/hibou_l/20x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/hibou_l/20x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/hibou_l/20x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/hibou_l/20x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/hibou_l/20x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/hibou_l/20x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/hibou_l/20x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/hibou_l/20x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/hibou_l/20x/*.parquet
- config_name: hibou_l_5x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/hibou_l/5x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/hibou_l/5x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/hibou_l/5x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/hibou_l/5x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/hibou_l/5x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/hibou_l/5x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/hibou_l/5x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/hibou_l/5x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/hibou_l/5x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/hibou_l/5x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/hibou_l/5x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/hibou_l/5x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/hibou_l/5x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/hibou_l/5x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/hibou_l/5x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/hibou_l/5x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/hibou_l/5x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/hibou_l/5x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/hibou_l/5x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/hibou_l/5x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/hibou_l/5x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/hibou_l/5x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/hibou_l/5x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/hibou_l/5x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/hibou_l/5x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/hibou_l/5x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/hibou_l/5x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/hibou_l/5x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/hibou_l/5x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/hibou_l/5x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/hibou_l/5x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/hibou_l/5x/*.parquet
- config_name: titan_20x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/titan/20x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/titan/20x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/titan/20x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/titan/20x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/titan/20x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/titan/20x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/titan/20x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/titan/20x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/titan/20x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/titan/20x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/titan/20x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/titan/20x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/titan/20x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/titan/20x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/titan/20x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/titan/20x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/titan/20x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/titan/20x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/titan/20x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/titan/20x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/titan/20x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/titan/20x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/titan/20x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/titan/20x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/titan/20x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/titan/20x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/titan/20x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/titan/20x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/titan/20x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/titan/20x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/titan/20x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/titan/20x/*.parquet
- config_name: uni_v1_10x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/uni_v1/10x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/uni_v1/10x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/uni_v1/10x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/uni_v1/10x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/uni_v1/10x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/uni_v1/10x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/uni_v1/10x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/uni_v1/10x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/uni_v1/10x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/uni_v1/10x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/uni_v1/10x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/uni_v1/10x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/uni_v1/10x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/uni_v1/10x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/uni_v1/10x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/uni_v1/10x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/uni_v1/10x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/uni_v1/10x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/uni_v1/10x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/uni_v1/10x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/uni_v1/10x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/uni_v1/10x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/uni_v1/10x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/uni_v1/10x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/uni_v1/10x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/uni_v1/10x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/uni_v1/10x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/uni_v1/10x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/uni_v1/10x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/uni_v1/10x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/uni_v1/10x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/uni_v1/10x/*.parquet
- config_name: uni_v1_20x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/uni_v1/20x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/uni_v1/20x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/uni_v1/20x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/uni_v1/20x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/uni_v1/20x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/uni_v1/20x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/uni_v1/20x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/uni_v1/20x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/uni_v1/20x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/uni_v1/20x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/uni_v1/20x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/uni_v1/20x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/uni_v1/20x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/uni_v1/20x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/uni_v1/20x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/uni_v1/20x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/uni_v1/20x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/uni_v1/20x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/uni_v1/20x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/uni_v1/20x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/uni_v1/20x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/uni_v1/20x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/uni_v1/20x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/uni_v1/20x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/uni_v1/20x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/uni_v1/20x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/uni_v1/20x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/uni_v1/20x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/uni_v1/20x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/uni_v1/20x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/uni_v1/20x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/uni_v1/20x/*.parquet
- config_name: uni_v1_5x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/uni_v1/5x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/uni_v1/5x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/uni_v1/5x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/uni_v1/5x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/uni_v1/5x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/uni_v1/5x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/uni_v1/5x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/uni_v1/5x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/uni_v1/5x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/uni_v1/5x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/uni_v1/5x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/uni_v1/5x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/uni_v1/5x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/uni_v1/5x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/uni_v1/5x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/uni_v1/5x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/uni_v1/5x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/uni_v1/5x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/uni_v1/5x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/uni_v1/5x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/uni_v1/5x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/uni_v1/5x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/uni_v1/5x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/uni_v1/5x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/uni_v1/5x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/uni_v1/5x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/uni_v1/5x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/uni_v1/5x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/uni_v1/5x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/uni_v1/5x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/uni_v1/5x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/uni_v1/5x/*.parquet
- config_name: uni_v2_10x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/uni_v2/10x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/uni_v2/10x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/uni_v2/10x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/uni_v2/10x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/uni_v2/10x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/uni_v2/10x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/uni_v2/10x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/uni_v2/10x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/uni_v2/10x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/uni_v2/10x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/uni_v2/10x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/uni_v2/10x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/uni_v2/10x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/uni_v2/10x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/uni_v2/10x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/uni_v2/10x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/uni_v2/10x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/uni_v2/10x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/uni_v2/10x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/uni_v2/10x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/uni_v2/10x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/uni_v2/10x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/uni_v2/10x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/uni_v2/10x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/uni_v2/10x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/uni_v2/10x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/uni_v2/10x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/uni_v2/10x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/uni_v2/10x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/uni_v2/10x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/uni_v2/10x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/uni_v2/10x/*.parquet
- config_name: uni_v2_20x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/uni_v2/20x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/uni_v2/20x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/uni_v2/20x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/uni_v2/20x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/uni_v2/20x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/uni_v2/20x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/uni_v2/20x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/uni_v2/20x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/uni_v2/20x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/uni_v2/20x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/uni_v2/20x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/uni_v2/20x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/uni_v2/20x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/uni_v2/20x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/uni_v2/20x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/uni_v2/20x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/uni_v2/20x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/uni_v2/20x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/uni_v2/20x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/uni_v2/20x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/uni_v2/20x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/uni_v2/20x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/uni_v2/20x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/uni_v2/20x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/uni_v2/20x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/uni_v2/20x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/uni_v2/20x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/uni_v2/20x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/uni_v2/20x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/uni_v2/20x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/uni_v2/20x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/uni_v2/20x/*.parquet
- config_name: uni_v2_5x
data_files:
- split: TCGA_ACC
path: data/TCGA-ACC/uni_v2/5x/*.parquet
- split: TCGA_BLCA
path: data/TCGA-BLCA/uni_v2/5x/*.parquet
- split: TCGA_BRCA
path: data/TCGA-BRCA/uni_v2/5x/*.parquet
- split: TCGA_CESC
path: data/TCGA-CESC/uni_v2/5x/*.parquet
- split: TCGA_CHOL
path: data/TCGA-CHOL/uni_v2/5x/*.parquet
- split: TCGA_COAD
path: data/TCGA-COAD/uni_v2/5x/*.parquet
- split: TCGA_DLBC
path: data/TCGA-DLBC/uni_v2/5x/*.parquet
- split: TCGA_ESCA
path: data/TCGA-ESCA/uni_v2/5x/*.parquet
- split: TCGA_GBM
path: data/TCGA-GBM/uni_v2/5x/*.parquet
- split: TCGA_HNSC
path: data/TCGA-HNSC/uni_v2/5x/*.parquet
- split: TCGA_KICH
path: data/TCGA-KICH/uni_v2/5x/*.parquet
- split: TCGA_KIRC
path: data/TCGA-KIRC/uni_v2/5x/*.parquet
- split: TCGA_KIRP
path: data/TCGA-KIRP/uni_v2/5x/*.parquet
- split: TCGA_LGG
path: data/TCGA-LGG/uni_v2/5x/*.parquet
- split: TCGA_LIHC
path: data/TCGA-LIHC/uni_v2/5x/*.parquet
- split: TCGA_LUAD
path: data/TCGA-LUAD/uni_v2/5x/*.parquet
- split: TCGA_LUSC
path: data/TCGA-LUSC/uni_v2/5x/*.parquet
- split: TCGA_MESO
path: data/TCGA-MESO/uni_v2/5x/*.parquet
- split: TCGA_OV
path: data/TCGA-OV/uni_v2/5x/*.parquet
- split: TCGA_PAAD
path: data/TCGA-PAAD/uni_v2/5x/*.parquet
- split: TCGA_PCPG
path: data/TCGA-PCPG/uni_v2/5x/*.parquet
- split: TCGA_PRAD
path: data/TCGA-PRAD/uni_v2/5x/*.parquet
- split: TCGA_READ
path: data/TCGA-READ/uni_v2/5x/*.parquet
- split: TCGA_SARC
path: data/TCGA-SARC/uni_v2/5x/*.parquet
- split: TCGA_SKCM
path: data/TCGA-SKCM/uni_v2/5x/*.parquet
- split: TCGA_STAD
path: data/TCGA-STAD/uni_v2/5x/*.parquet
- split: TCGA_TGCT
path: data/TCGA-TGCT/uni_v2/5x/*.parquet
- split: TCGA_THCA
path: data/TCGA-THCA/uni_v2/5x/*.parquet
- split: TCGA_THYM
path: data/TCGA-THYM/uni_v2/5x/*.parquet
- split: TCGA_UCEC
path: data/TCGA-UCEC/uni_v2/5x/*.parquet
- split: TCGA_UCS
path: data/TCGA-UCS/uni_v2/5x/*.parquet
- split: TCGA_UVM
path: data/TCGA-UVM/uni_v2/5x/*.parquet
TCGA Pathology Feature Atlas
This repository stores verified TCGA pathology foundation-model embeddings as sharded Parquet files.
Physical layout:
data/{project_id}/{model_name}/{magnification}/part-*.parquet
Included release scope
- Models: chief, conch_v1, ctranspath, gigapath, gigapath_slide, hibou_l, titan, uni_v1, uni_v2
- Groups: 671
- Shards: 5,513
- Embedding rows: 4,838,064
- Registry rows: 244,768
- H5 validation rows: 244,768
- H5 validation failures: 0
Each row is a chunk of patch or slide embeddings from one TCGA slide.
Example streaming load:
from datasets import load_dataset
ds = load_dataset("IUCompPath/TRACE", name="conch_v1_20x", split="TCGA_BRCA", streaming=True)