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| license: cc-by-4.0 |
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| |
| # SPACE manuscript data |
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|
| This repository contains the twelve original pre-training split BED |
| files (human, mouse, ce11 and dm6; train, valid, test) the current Source Data |
| workbook, and regulatory-probe sample/split manifests (11,000 elements across |
| two species). For coverage and upstream data access, see the sections below. |
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|
| BED windows are 131,072 bp. SPACE-Pro constructs 196,608-bp contexts about their |
| midpoints using the matching reference genome. BED coordinates alone do not |
| encode the extended sequence. Preserve the genome assemblies and masking used |
| in the original preprocessing. |
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| Human/mouse processed functional-profile H5 files total approximately 424.85 GB; |
| prefer their existing hosted dataset rather than uploading a duplicate without |
| checking the remote contents. Their sequence arrays are 131,072 bp; SPACE-Pro |
| uses extended genome contexts. Additional-species reference FASTA and BED files |
| support sequence-only supervision. The local ce11/dm6 functional-profile H5 |
| files are not classified as data used by that self-supervised objective. |
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| Reference assemblies: human hg38 (`hg38.ml.fa` processed file), mouse mm10, |
| *C. elegans* ce11 and *D. melanogaster* dm6. The exact preparation and source of |
| the processed human FASTA require documentation before redistribution. |
|
|
| Further downstream dataset split files and access routes must be inventoried |
| before claiming full reproduction coverage. Dataset-specific redistribution |
| terms and citations must be preserved. The license below applies only to the |
| authors' original contributions, not to third-party source material. |
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| Source Data coverage is described in the accompanying notes and workbook index. |
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|
| ## License and attribution |
|
|
| The authors' original manifests, split definitions, documentation and Source |
| Data contributions are licensed under |
| [Creative Commons Attribution 4.0 International](LICENSE) (CC BY 4.0). |
| Attribute these contributions to the authors of **SPACE: A foundation model for |
| transferable genomic learning across species**, identify the data release used, |
| provide the license link, and indicate changes when distributing adaptations. |
|
|
| This grant covers only rights held by the SPACE authors. Third-party genome |
| sequences, annotations, benchmark data, and inherited pre-training split files |
| retain their original terms; their presence or reference here does not relicense |
| them. Source citations and any separately identified third-party notices must |
| be retained. Model weights and software are licensed separately under Apache-2.0. |
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|
