docs: update README with comprehensive clinical abbreviations and diagnostic codebook
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README.md
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## 5. Master Metadata (`metadata/`) & Clinical Crosswalks
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Instead of downloading multi-hundred-gigabyte archives to inspect sample attributes, download the lightweight
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### 1. `metadata/adapter_manifest_reviewed.parquet` (39.9 MB)
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Contains **4,307,415 rows** mapping every asset with standard schema:
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""").df()
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```
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### 2. `metadata/
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Comprehensive 95-class disease taxonomy mapping local clinical diagnoses (`raw_zh`) to standardized English terms (`canonical_en`), abbreviations (`AMD`, `PDR`, `RVO`, `CSC`), disease families (`family_en`), and specificity levels.
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###
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Complete breakdown of 1,817,159 instruction-tuned samples and 1,459,879 downstream high-confidence diagnostic splits.
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---
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## 6.
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1. **17-Class Retinal Disease Classification (`eryuanFundusT17RDCls`)**:
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Standardized 17-class classification for common and sight-threatening retinal conditions (Normal, DR, AMD, RVO, Pathological Myopia, Macular Hole, Epiretinal Membrane, Retinal Detachment, Retinitis Pigmentosa, etc.).
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---
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---
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## 7. Data Processing & Curation Toolkit (`data_processing/`)
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All clinical data preprocessing, de-identification, quality filtering, black-border cropping, report parsing, modality decoupling, and taxonomy alignment scripts are provided in the standalone [`data_processing/`](https://huggingface.co/datasets/Kaphathy/Dataset/tree/main/data_processing) directory at the repository root.
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- **Modular Organization**:
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- `01_deidentification/`: High-throughput circular FOV masking, OCR-based PII redaction, and border trimming (`crop_fundus_images.py`, `deidentify_batch.py`, `audit_fundus_corner_pii.py`, etc.).
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- `02_quality_control/`: ASRMNet-based quality grading (`asrm_preprocess.py`), EyePACS frozen gray-edge artifact scanning (`scan_eyepacs_edge_artifact.py`), and clinical diagnosis Excel verification (`clean_excel.py`, `build_hcw_semantic_patch.py`).
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- `03_report_parsing/`: 41-column master manifest materialization (`materialize_newdata_prompts.py`), clinical note merging (`attach_labels.py`), and RoBERTa-SigLIP zero-shot OCT lesion cross-modal retrieval (`batch_retrieve_reports.py`).
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- `04_modality_split/`: Multi-feature heuristic classifier for decoupling mixed OCT/OCTA/SLO archives (`split_octbuckets_octa_review.py`).
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- `05_taxonomy_and_prompts/`: 95-disease ICD/SNOMED bilingual taxonomy builder (`build_mixed_v6_taxonomy.py`) and prompt de-biasing (`build_clean_captions.py`).
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Every script contains structured file headers detailing its original purpose, target dataset, authors, inputs, outputs, and dependencies. See [`data_processing/README.md`](https://huggingface.co/datasets/Kaphathy/Dataset/blob/main/data_processing/README.md) for the master script-to-dataset crosswalk matrix.
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## 8. Quick Start: Extraction & Usage Guide
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### A. Download & Extract Archives (Linux / macOS)
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## 5. Master Metadata (`metadata/`) & Clinical Crosswalks
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Instead of downloading multi-hundred-gigabyte archives to inspect sample attributes, download the lightweight metadata and clinical crosswalk files in `metadata/`:
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### 1. `metadata/adapter_manifest_reviewed.parquet` (39.9 MB)
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Contains **4,307,415 rows** mapping every asset with standard schema:
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""").df()
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```
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### 2. `metadata/trhd66_clinical_abbreviations.csv` (25 KB)
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Full 66-class fine-grained disease taxonomy codebook from Beijing Tongren & Handan Eye Hospital (`trhd3_FRD_Cls66_Train`). Includes abbreviation code (`class_code`), standardized Chinese name (`official_zh`), canonical English term (`canonical_en`), anatomical category (`category`), clinical manifestation, and vital disambiguation rules.
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### 3. `metadata/ophthalmic_abbreviations_crosswalk.csv` (27 KB)
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Unified multi-cohort crosswalk indexing **135+ ophthalmic abbreviations and disease codes** across `trhd3_FRD_Cls66_Train`, `eryuanFundusT17RDCls`, `RFMiD1`, `ODIR-5K`, and multimodal diagnostic biomarkers (`CFP`, `UWF`, `OCT`, `OCTA`, `FFA`, `UBM`, `B-Scan`, `RNFL`, `CDR`).
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### 4. `metadata/tongren95_taxonomy.csv` (12 KB)
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Comprehensive 95-class disease taxonomy mapping local clinical diagnoses (`raw_zh`) to standardized English terms (`canonical_en`), abbreviations (`AMD`, `PDR`, `RVO`, `CSC`), disease families (`family_en`), and specificity levels.
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### 5. `metadata/trhd59_taxonomy.csv` (5.5 KB)
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59-class baseline model taxonomy with strict semantic relations mapped to Tongren-95 hierarchical leaves and clinical notes.
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### 6. `metadata/labeled_assets_summary.json` (2.0 KB)
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Complete breakdown of 1,817,159 instruction-tuned samples and 1,459,879 downstream high-confidence diagnostic splits.
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---
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## 6. Clinical Abbreviations & Diagnostic Codebook (临床病种缩写与全称速查手册)
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Many ophthalmic datasets adopt hospital-specific, short-hand abbreviations that can cause severe diagnostic ambiguity if misinterpreted. Below is the authoritative clinical dictionary aligned with the codebase (`class_labels_zh.py`, `trhd59_taxonomy.csv`, and `trhd66_clinical_abbreviations.csv`).
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### A. Critical Clinical Disambiguation & Avoidance of Misnomers (核心消歧与避坑指南)
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> [!IMPORTANT]
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> **Key Disambiguation Rules**:
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> 1. **`PMM_CNV` = 特发性息肉状脉络膜血管病变 (Polypoidal Choroidal Vasculopathy / PCV)**
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> *Misconception*: Frequently mistaken for "Pathologic Myopia with CNV".
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> *Ground Truth*: In this cohort, `PMM_CNV` strictly represents **PCV**. True myopic CNV is separately encoded as **`PM_CNV`** (高度近视性脉络膜新生血管).
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> 2. **`COC` = 先天性大视杯 (Congenital Large Optic Cup)**
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> *Misconception*: Mistaken for Choroidal Osteoma (脉络膜骨瘤) or glaucomatous cupping.
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> *Ground Truth*: Codebase explicitly documents: *"COC must not be interpreted as choroidal osteoma"*. It represents physiological large optic cup with normal, pink neuroretinal rim obeying the ISNT rule.
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> 3. **`TC` vs `TR`: 外伤性脉络膜视网膜病变 vs 外伤性视网膜病变**
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> *Misconception*: `TC` mistaken for Toxocariasis (眼弓蛔虫病).
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> *Ground Truth*: In this project, `TC` = **Traumatic Chorioretinopathy** (外伤性脉络膜视网膜病变, deeper choroidal involvement with pigmentary scarring); `TR` = **Traumatic Retinopathy** (外伤性视网膜病变, retinal contusion/Purtscher-like cotton wool spots).
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> 4. **`EMM` vs `ERM`: 黄斑膜前膜 vs 视网膜前膜**
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> *Ground Truth*: `EMM` is strictly restricted to the **foveal/macular area** (Epiretinal Macular Membrane), whereas `ERM` represents generalized **Epiretinal Membrane** across the posterior pole.
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> 5. **`SOD` = 小视盘 / 视隔-视神经发育不良 (Small Optic Disc / Septo-Optic Dysplasia)**
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> *Ground Truth*: Represents severe optic nerve hypoplasia, linked with de Morsier syndrome (midline septum pellucidum absence).
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> 6. **`PR` = 视网膜静脉周围炎 (Periphlebitis Retinae / Eales Disease)**
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> *Misconception*: Mistaken for Retinal Detachment or prolapse.
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> *Ground Truth*: Represents vascular periphlebitis with characteristic perivenous sheathing and recurrent vitreous hemorrhages in young adults.
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> 7. **`SO eye` = 硅油填充眼 (Silicone Oil Filled Eye)**
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> *Misconception*: Mistaken for Sympathetic Ophthalmia.
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> *Ground Truth*: Iatrogenic post-vitrectomy status showing hyper-reflective silicone oil reflex and meniscus droplets.
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> 8. **`PLS` = 激光光凝斑 (Retinal Laser Spots)**, **`PM` = 视盘前膜 (Prepapillary Membrane)**, and **`VO` = 玻璃体混浊 (Vitreous Opacity)**: None of these represent Pathological Myopia or Vein Occlusion.
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---
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### B. 66-Class Fine-Grained Retinal Disease Cohort (`trhd3_FRD_Cls66_Train`)
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| Code | 规范中文全称 | Canonical English Name | 疾病大类 (Category) | 关键临床征象与消歧要点 |
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| :--- | :--- | :--- | :--- | :--- |
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| **AH** | 玻璃体星状变性 | Asteroid Hyalosis | 玻璃体疾病 (Vitreous) | 腔内弥漫散在、亮白色或黄白含钙小球,悬于网架,不伴活动性炎症。 |
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| **AMD** | 年龄相关性黄斑变性 | Age-Related Macular Degeneration | 黄斑疾病 (Macular) | 玻璃膜疣(Drusen)、色素紊乱、地图状萎缩或脉络膜新生血管(CNV)。 |
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| **ARN** | 急性视网膜坏死综合征 | Acute Retinal Necrosis | 感染与坏死性疾病 | 中周边视网膜多灶性黄白全层坏死斑,迅速融合,伴闭塞性动脉炎。 |
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| **BRVO** | 视网膜分支静脉阻塞 | Branch Retinal Vein Occlusion | 视网膜血管疾病 | 局限于分支静脉引流区的扇形火焰状浅层出血、水肿与棉絮斑。 |
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| **CD** | 脉络膜缺损 | Choroidal Defect / Coloboma | 先天发育异常 | 视盘下方或下鼻侧扇形瓷白缺损区,巩膜裸露,边缘伴色素沉着。 |
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| **CEC** | 中心性渗出性脉络膜视网膜病变 (中渗) | Central Exudative Chorioretinopathy | 黄斑与脉络膜病变 | 青年单眼黄斑孤立灰白病灶,伴浆液脱离、出血及硬渗环(特发CNV)。 |
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| **CH** | 脉络膜血管瘤 | Choroidal Hemangioma | 脉络膜肿瘤 | 后极部橘红或红黄色扁平/微隆起良性血管瘤,易继发浆液性网脱。 |
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| **CHN** | 脉络膜痣 | Choroidal Nevus | 脉络膜良性肿瘤 | 脉络膜深层扁平灰褐/青灰斑块,常伴玻璃膜疣。**严禁误判为 CNV**。 |
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| **COC** | 先天性大视杯 (生理性大视杯) | Congenital Large Optic Cup | 视神经发育异常 | 双眼对称性C/D大(>0.6~0.8),盘沿粉红饱满守ISNT法则。**非骨瘤**。 |
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| **CR** | 脉络膜破裂 | Choroidal Rupture | 眼外伤 (Trauma) | 钝挫伤后与视盘同心的月牙形/弧形白黄线条裂隙,晚期易继发CNV。 |
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| **CRE** | 视网膜震荡 (柏林水肿) | Commotio Retinae (Berlin Edema) | 眼外伤 (Trauma) | 挫伤后光感受器外节受损致乳白反光水肿混浊,黄斑呈樱桃红点。 |
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| **CRVO** | 视网膜中央静脉阻塞 | Central Retinal Vein Occlusion | 视网膜血管疾病 | 全眼底四象限弥漫暴发性火焰状出血、静脉高度迂曲扩张及盘水肿。 |
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| **CSC** | 中心性浆液性脉络膜视网膜病变 (中浆) | Central Serous Chorioretinopathy | 黄斑与脉络膜病变 | 中青年男性黄斑圆形神经上皮浅脱离晕轮,无大出血,FFA呈墨渍渗漏。 |
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| **Cataract**| 白内障 | Cataract | 屈光间质异常 | 晶状体混浊致眼底反光暗黄、对比度显著衰减模糊之质控指标。 |
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| **Chorioretinitis** | 脉络膜视网膜炎 | Chorioretinitis | 葡萄膜炎性疾病 | 脉络膜与视网膜多灶性黄白炎性浸润病灶,伴周围水肿及色素紊乱。 |
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| **Choroiditis** | 脉络膜炎 | Choroiditis | 葡萄膜炎性疾病 | 脉络膜基质层单个或多灶浅黄浸润结节,早期视网膜内层常未波及。 |
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| **EMM** | 黄斑膜前膜 | Epiretinal Macular Membrane | 玻璃体视网膜界面 | **特指局限于黄斑中央凹区**的玻璃纸样纤维增殖反光膜与血管扭曲。 |
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| **ERM** | 视网膜前膜 | Epiretinal Membrane | 玻璃体视网膜界面 | 广布于后极部视网膜表面的无血管纤维胶质膜,反光呈丝绸样。 |
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| **FEVR** | 家族性渗出性玻璃体视网膜病变 | Familial Exudative Vitreoretinopathy | 遗传性血管病 | 双眼周边视网膜无血管灌注区,血管被牵拉向颞侧移位,无吸氧史。 |
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| **Glaucoma**| 青光眼 | Glaucoma | 视神经病变 | 病理性视杯扩大深凹、盘沿变薄破ISNT法则、RNFL局灶切迹缺损。 |
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| **HR** | 高血压性视网膜病变 | Hypertensive Retinopathy | 视网膜血管疾病 | 小动脉弥漫变细、动静脉交叉压迫征(A/V crossing)、铜丝银丝征。 |
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| **ION** | 缺血性视神经病变 | Ischemic Optic Neuropathy | 视神经病变 | 睫状后动脉缺血致视盘苍白浅水肿,伴与盲点相连的水平半盲。 |
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| **ME** | 黄斑水肿 | Macular Edema | 黄斑疾病 | 黄斑区神经上皮增厚混浊、中心凹反光消失,可呈花瓣样囊样(CME)。 |
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| **MGS** | 牵牛花综合征 | Morning Glory Syndrome | 视神经先天畸形 | 视盘漏斗状巨大凹陷畸形,中央充填胶质,血管呈放射状散出如花。 |
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| **MH** | 黄斑裂孔 | Macular Hole | 黄斑疾病 | 黄斑中心凹全层缺损,边界锐利的圆形深红底孔,孔周水肿晕轮。 |
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| **MHE** | 黄斑出血 | Macular Hemorrhage | 黄斑疾病 | 黄斑浅层/深层或sub-RPE局限性暗红/鲜红积血。**非白色点状病变**。 |
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| **MNF** | 有髓神经纤维 | Myelinated Nerve Fiber | 先天发育异常 | 盘周羽毛状/扇形瓷白斑,沿视神经纤维束走向分布,遮挡血管。 |
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| **MTD** | 近视性视盘倾�� | Myopic Tilted Disc | 近视与结构异常 | 高度近视眼轴延长致视盘斜横位,伴宽大颞侧近视弧,筛板后倾。 |
|
| 242 |
+
| **NPDR** | 非增殖期糖尿病视网膜病变 | Non-Proliferative DR | 糖尿病视网膜病变 | 散在微动脉瘤(MA)、点片深层出血、硬性渗出及棉絮斑,无新生血管。 |
|
| 243 |
+
| **Normal** | 正常眼底 | Normal Fundus | 正常结构 | 视盘色淡红、界清,C/D<0.5,血管自然(2:3),中心凹反光尖锐明亮。 |
|
| 244 |
+
| **OA** | 视神经萎缩 | Optic Atrophy | 视神经病变 | 视盘呈浅黄白或瓷白色苍白,毛细血管稀疏,筛板小孔清晰显露。 |
|
| 245 |
+
| **ODC** | 视盘缺损 | Optic Disc Coloboma | 视神经先天畸形 | 胚裂未闭致视盘下方极度深凹陷,视盘常增大变形,血管上方移位。 |
|
| 246 |
+
| **ODV** | 视盘血管炎 (乳头静脉炎) | Optic Disc Vasculitis | 视神经血管病变 | 青年多见,视盘水肿充血,盘面及盘周小静脉极度扩张迂曲与出血。 |
|
| 247 |
+
| **ON** | 视神经炎 | Optic Neuritis | 视神经炎症 | 乳头炎型视盘充血隆起边缘模糊;球后视神经炎早期眼底正常。 |
|
| 248 |
+
| **ONH** | 视神经发育不全 | Optic Nerve Hypoplasia | 视神经先天畸形 | 视盘显著缩小(正常1/2以下),淡黄或灰色,特征性**双环征**。 |
|
| 249 |
+
| **ONI** | 视神经损伤 (外伤性) | Optic Nerve Injury | 眼外伤 (Trauma) | 外伤后视盘早期可轻度水肿或正常,数周后迅速转为下行性萎缩。 |
|
| 250 |
+
| **PD** | 视盘水肿 (颅高压性) | Papilledema / Disc Edema | 视神经病变 | 颅高压致双侧视盘高度隆起充血呈菌菇状、杯消失、静脉搏动消失。 |
|
| 251 |
+
| **PDR** | 增殖期糖尿病性视网膜病变 | Proliferative DR | 糖尿病视网膜病变 | 视盘/网膜新生血管(NVD/NVE)、纤维增殖膜、前出血、玻璃体积血。 |
|
| 252 |
+
| **PLS** | 激光光凝斑 | Retinal Laser Spots | 术后改变 | 成排规则圆形激光瘢痕,陈旧斑中心萎缩、边缘色素沉着。**非近视**。 |
|
| 253 |
+
| **PM** | 视盘前膜 | Prepapillary Membrane | 玻璃体视网膜界面 | 视盘表面及前方纤维胶质薄膜。**非病理性近视 (Pathologic Myopia)**。 |
|
| 254 |
+
| **PMM_CNV**| ⚠️ 特发性息肉样脉络膜血管病变 | Polypoidal Choroidal Vasculopathy (PCV) | 脉络膜血管疾病 | **【权威修正】对应PCV!** 橘红结节病灶伴大面积网膜下积血与出血PED。 |
|
| 255 |
+
| **PM_CNV** | 高度近视性脉络膜新生血管 | Pathologic Myopia with CNV | 病理性近视并发症 | 高度近视底上黄斑区灰白扁平新生血管伴出血(Fuchs斑)。 |
|
| 256 |
+
| **PPE** | 假性视盘水肿 | Pseudopapilledema | 视神经发育变异 | 盘外观拥挤隆起但无充血出血渗出,常见于高度远视或埋藏玻璃膜疣。 |
|
| 257 |
+
| **PR** | 视网膜静脉周围炎 (Eales病) | Retinal Periphlebitis | 视网膜血管炎 | 青年男性周边小静脉白鞘(白套征)、出血及无灌注区,反复积血。 |
|
| 258 |
+
| **PVR** | 增殖性玻璃体视网膜病变 | Proliferative Vitreoretinopathy | 网脱并发症 | 裂孔或术后RPE增殖收缩,致视网膜固定星芒皱褶与僵硬漏斗收缩。 |
|
| 259 |
+
| **RAM** | 视网膜大动脉瘤 | Retinal Arterial Macroaneurysm | 视网膜血管疾病 | 主要分支大动脉动静脉交叉处囊状扩张,伴深浅出血与环形硬渗。 |
|
| 260 |
+
| **RAO** | 视网膜动脉阻塞 | Retinal Artery Occlusion | 视网膜血管急症 | 动脉极细,受累视网膜弥漫乳白水肿缺血,中心凹显**樱桃红点**。 |
|
| 261 |
+
| **RD** | 视网膜脱离 | Retinal Detachment | 视网膜急症 | 神经上皮脱离呈灰白波浪隆起,血管弯曲爬行;分孔源/牵拉/渗出性。 |
|
| 262 |
+
| **RP** | 视网膜色素变性 | Retinitis Pigmentosa | 遗传性营养不良 | 早期夜盲,中周边骨细胞样黑色素沉着,动脉纤细,视盘蜡黄。 |
|
| 263 |
+
| **RPA** | 白点状视网膜变性 | Retinitis Punctata Albescens | 遗传性营养不良 | RP特殊亚型,赤道与后极深层密布均匀黄白小圆点,动脉变细。 |
|
| 264 |
+
| **RPH** | 妊娠期高血压眼底病变 | Retinopathy of Pregnancy-Induced HTN | 全身血管眼底改变 | 妊高征/子痫前期动脉急剧痉挛、火焰状出血与棉絮斑,可伴渗出脱离。 |
|
| 265 |
+
| **RS** | 视网膜劈裂症 | Retinoschisis | 周边退行变性 | 神经上皮层内分裂,好发颞下,半球形菲薄透明隆起,银丝血管。 |
|
| 266 |
+
| **RT** | 视网膜裂孔 | Retinal Tear / Retinal Break | 视网膜病变 | 神经上皮全层缺损,常见玻璃体牵拉马蹄形裂孔或萎缩孔,透红光。 |
|
| 267 |
+
| **RV** | 视网膜血管炎 | Retinal Vasculitis | 视网膜血管炎 | 动静脉周围显著白色血管鞘(白套征),伴管腔狭窄、渗漏与出血。 |
|
| 268 |
+
| **SO eye** | 硅油填充眼 (硅油眼) | Silicone Oil Filled Eye | 术后医源性状态 | 玻切术后硅油填充,视网膜呈镜面眩光,下方可见球形硅油小乳滴。 |
|
| 269 |
+
| **SOD** | 小视盘 / 视隔-视神经发育不良 | Small Optic Disc / Septo-Optic Dysplasia | 视神经先天畸形 | 视乳头极小苍白(正常1/3以下),常伴中线透明隔缺如(de Morsier)。 |
|
| 270 |
+
| **Staphyloma**| 后巩膜葡萄肿 | Posterior Staphyloma | 高度近视结构畸形 | 后极部巩膜变薄向后膨出凹陷呈盆状,伴重度弥漫性脉络膜萎缩。 |
|
| 271 |
+
| **TC** | ⚠️ 外伤性脉络膜视网膜病变 | Traumatic Chorioretinopathy | 眼外伤后遗症 | **【非弓蛔虫病】** 钝挫伤后脉络膜视网膜萎缩变性、杂乱色素与瘢痕。 |
|
| 272 |
+
| **TDS** | 倾斜视盘综合征 | Tilted Disc Syndrome | 视神经先天畸形 | 视盘斜向旋转(向下鼻),下鼻侧脉络膜变薄淡染,伴双颞上视野缺损。 |
|
| 273 |
+
| **TR** | 外伤性视网膜病变 | Traumatic Retinopathy | 眼外伤 (Trauma) | 创伤引起的单纯视网膜挫伤或远达性外伤(Purtscher)棉絮斑与出血。 |
|
| 274 |
+
| **UV** | 葡萄膜炎 (色素膜炎) | Uveitis | 葡萄膜炎性疾病 | 后/全葡萄膜炎,见玻璃体雪球样混浊、脉络膜炎性浸润黄斑与血管鞘。 |
|
| 275 |
+
| **VH** | 玻璃体积血 | Vitreous Hemorrhage | 玻璃体急症 | 腔内积血暗红反光,细节模糊,重度者见下方重力性沉降液平面。 |
|
| 276 |
+
| **VKH** | 小柳原田病 | Vogt-Koyanagi-Harada Disease | 自身免疫葡萄膜炎 | 急性期多灶性浆液脱离与视盘充血;慢性期脉络膜脱色素呈夕阳红。 |
|
| 277 |
+
| **VO** | 玻璃体混浊 | Vitreous Opacity | 玻璃体退变 | 腔内点片条膜状灰白飘浮物,投射半透明阴影。**绝非静脉阻塞**。 |
|
| 278 |
+
| **VTS** | 玻璃体黄斑牵拉综合征 | Vitreomacular Traction Syndrome | 玻璃体视网膜界面 | 玻璃体后皮质对黄斑中心凹不全脱离黏连牵引,中心凹隆起变形。 |
|
| 279 |
+
| **coats** | 外层渗出性视网膜病 (Coats病) | Coats Disease | 先天血管畸形 | 儿童单眼好发,周边毛细血管灯泡样扩张,后极厚实金黄色硬渗网脱。 |
|
| 280 |
+
|
| 281 |
+
---
|
| 282 |
+
|
| 283 |
+
### C. Multi-Cohort Abbreviation Crosswalk Summary
|
| 284 |
+
|
| 285 |
+
#### 1. 17-Class Retinal Disease Cohort (`archives/eryuanFundusT17RDCls/`)
|
| 286 |
+
- **`CNV`**: 脉络膜新生血管 (Choroidal Neovascularization)
|
| 287 |
+
- **`ION`**: 缺血性视神经病变 (Ischemic Optic Neuropathy)
|
| 288 |
+
- **`ME`**: 黄斑水肿 (Macular Edema)
|
| 289 |
+
- **`OA`**: 视神经萎缩 (Optic Atrophy)
|
| 290 |
+
- **`OpticNP`**: 其他视神经病变 (Optic Neuropathy)
|
| 291 |
+
- **`OpticNR`**: 视神经炎 (Optic Neuritis)
|
| 292 |
+
- **`PapEdema`**: 视盘水肿 (Papilledema)
|
| 293 |
+
- **`VH`**: 玻璃体积血 (Vitreous Hemorrhage)
|
| 294 |
+
- **`VKH`**: 小柳原田病 (Vogt-Koyanagi-Harada Disease)
|
| 295 |
+
- **`AMD` / `DR` / `RVO` / `RAO` / `RD` / `RP` / `CSC` / `ERM` / `MH`**: Standard canonical terms matching the 66-class definitions above.
|
| 296 |
+
|
| 297 |
+
#### 2. RFMiD Multi-Label Dataset (`archives/RFMiD1/`)
|
| 298 |
+
- **`DN`**: 玻璃膜疣 (Drusen)
|
| 299 |
+
- **`TSLN`**: 豹纹状眼底 (Tessellated Fundus)
|
| 300 |
+
- **`LS`**: 激光斑 (Laser Scars)
|
| 301 |
+
- **`MS`**: 黄斑区瘢痕 (Macular Scar)
|
| 302 |
+
- **`CSR`**: 中心性浆液性脉络膜视网膜病变 (Central Serous Chorioretinopathy / CSC)
|
| 303 |
+
- **`ODP`**: 视盘小凹 (Optic Disc Pit)
|
| 304 |
+
- **`ODE`**: 视盘水肿 (Optic Disc Edema)
|
| 305 |
+
- **`ST`**: 后巩膜葡萄肿 (Posterior Staphyloma)
|
| 306 |
+
- **`AION`**: 前部缺血性视神经病变 (Anterior Ischemic Optic Neuropathy)
|
| 307 |
+
- **`PT`**: 中心凹旁毛细血管扩张症 (Parafoveal Telangiectasia)
|
| 308 |
+
- **`CRS`**: 脉络膜视网膜炎 (Chorioretinitis)
|
| 309 |
+
- **`EDN`**: 视网膜渗出病灶 (Exudation)
|
| 310 |
+
- **`CM` / `MC`**: 缺损 (Coloboma) / 黄斑缺损 (Macular Coloboma)
|
| 311 |
+
- **`PRH`**: 视网膜前出血 (Preretinal Hemorrhage)
|
| 312 |
+
- **`CWS`**: 棉絮斑 (Cotton Wool Spots)
|
| 313 |
+
- **`CME`**: 黄斑囊样水肿 (Cystoid Macular Edema)
|
| 314 |
+
- **`CF`**: 脉络膜皱褶 (Choroidal Folds)
|
| 315 |
+
- **`VS`**: 视网膜血管炎 (Retinal Vasculitis)
|
| 316 |
+
|
| 317 |
+
#### 3. ODIR-5K Single-Letter Diagnostic Codes (`archives/ODIR/`)
|
| 318 |
+
- **`N`**: Normal Fundus (正常眼底)
|
| 319 |
+
- **`D`**: Diabetic Retinopathy (糖尿病视网膜病变)
|
| 320 |
+
- **`G`**: Glaucoma (青光眼)
|
| 321 |
+
- **`C`**: Cataract (白内障)
|
| 322 |
+
- **`A`**: Age-Related Macular Degeneration (年龄相关性黄斑变性)
|
| 323 |
+
- **`H`**: Hypertensive Retinopathy (高血压性视网膜病变)
|
| 324 |
+
- **`M`**: Pathological Myopia (病理性近视)
|
| 325 |
+
- **`O`**: Other Abnormalities / Diseases (其他异常及眼底疾病)
|
| 326 |
+
|
| 327 |
+
#### 4. Multimodal Instrumentation & Clinical Parameters
|
| 328 |
+
- **`CFP`**: 彩色眼底照相 (Color Fundus Photography, 30°~50°)
|
| 329 |
+
- **`UWF`**: 超广角眼底照相 (Ultra-Widefield Fundus Photography, 200° Optos)
|
| 330 |
+
- **`OCT`**: 光学相干断层扫描 (Optical Coherence Tomography B-Scans)
|
| 331 |
+
- **`OCTA`**: 光学相干断层扫描血管成像 (OCT Angiography En-face Slabs)
|
| 332 |
+
- **`FFA`**: 眼底荧光素血管造影 (Fundus Fluorescein Angiography Sequences)
|
| 333 |
+
- **`UBM`**: 超声生物显微镜 (50MHz High-Frequency Anterior Segment Ultrasound)
|
| 334 |
+
- **`B-Scan`**: 眼科B型超声 (10MHz Ocular Ultrasound Sweeps)
|
| 335 |
+
- **`C/D (CDR)`**: 杯盘比 / 垂直杯盘比 (Cup-to-Disc Ratio / vCDR)
|
| 336 |
+
- **`RNFL`**: 视网膜神经纤维层 (Retinal Nerve Fiber Layer)
|
| 337 |
+
- **`PED`**: 色素上皮脱离 (Pigment Epithelial Detachment)
|
| 338 |
+
- **`FAZ`**: 中心凹无血管区 (Foveal Avascular Zone)
|
| 339 |
+
|
| 340 |
+
---
|
| 341 |
+
|
| 342 |
+
## 7. Benchmark Evaluation Tasks
|
| 343 |
|
| 344 |
1. **17-Class Retinal Disease Classification (`eryuanFundusT17RDCls`)**:
|
| 345 |
Standardized 17-class classification for common and sight-threatening retinal conditions (Normal, DR, AMD, RVO, Pathological Myopia, Macular Hole, Epiretinal Membrane, Retinal Detachment, Retinitis Pigmentosa, etc.).
|
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|
| 360 |
|
| 361 |
---
|
| 362 |
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| 363 |
## 8. Quick Start: Extraction & Usage Guide
|
| 364 |
|
| 365 |
### A. Download & Extract Archives (Linux / macOS)
|