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| """Template-backed digestion path for the Anton Paar Multiwave 7101 (24 x 8 mL rack) thermal runtime. | |
| Library: assets/reactions/multiwave_7101_digestion_library/templates.json (EPA SW-846 3051A/3052/3015A programs, | |
| NIST SRM certified mass fractions, EPA 3051A measured recoveries, reagent properties, IAPWS water saturation curve). | |
| Adds three agent capabilities to ``basic40_runtime_thermal.Multiwave7101Session`` (hooked in the runtime file): | |
| * ``template.read`` public reference lookup by template id; reveals nothing about any loaded vessel. | |
| * ``digestion.load_template`` declare the contents of one rack vessel (reference material id, sample mass, acid | |
| volume, EPA method id); door open and heating off, vessel present in the slot. | |
| * ``digestion.evaluate`` compare the host-tracked thermal history (indicated temperature, shared lumped node) | |
| with the method program (window, ramp, hold) and list the analytes expected in the | |
| digest from the certificate / EPA recovery tables. | |
| The lumped thermal model itself is unchanged: loading template contents does not alter heat capacity or power. | |
| The host step hook ``track_step`` integrates time-in-window exactly by bisection on the runtime's own closed-form | |
| ``_advance`` (the single-node trajectory is monotone within one host step). | |
| """ | |
| from __future__ import annotations | |
| import copy | |
| import json | |
| import math | |
| from functools import lru_cache | |
| from typing import Any | |
| try: # scripts/ on sys.path (tests, Matterix runtime bridge) | |
| from template_library import index_by_id, library_sha256, load_library, provenance | |
| except ImportError: # imported as scripts.basic40_templates.* | |
| from scripts.template_library import index_by_id, library_sha256, load_library, provenance | |
| TEMPLATE_REL = "assets/reactions/multiwave_7101_digestion_library/templates.json" | |
| RACK24_FILL_LIMIT_M3 = 5e-6 # manufacturer brochure 2026 PDF p.5, Rack 24 column (contract source manufacturer_brochure_2026) | |
| RACK24_SAMPLE_LIMIT_KG = 2e-4 # same table: 0.2 g sample for Rack 24 | |
| RACK24_VIAL_VOLUME_M3 = 8e-6 | |
| CAPABILITIES = ("template.read", "digestion.load_template", "digestion.evaluate") | |
| STATE_KEY = "template_digestion" | |
| SOLID_MATRIX_TO_METHOD = { # library CRM matrix -> matrix words used in the EPA scope sections | |
| "soil": ("soils",), "marine_sediment": ("sediments",), "estuarine_sediment": ("sediments",), "river_sediment": ("sediments",), | |
| "plant_leaves": ("biological tissues",), "animal_tissue": ("biological tissues",), "oil": ("oils",), | |
| } | |
| RECOVERY_MATERIAL_MATRIX = {"nist_srm_2704": "river_sediment", "nist_srm_4355": "soil", "nist_srm_1084a": "oil"} | |
| SYNTHETIC_PARTS = ["thermal history: shared lumped single-node surrogate of the Multiwave 7101 runtime (assumed absorbed power/UA)", | |
| "digest volume assumed equal to the declared acid volume (sample water, evaporation and dilution not modelled)"] | |
| LIMITATIONS = [ | |
| "No digestion kinetics: an analyte is listed as expected only after the method hold time has been met in the method window; partial programs return null amounts.", | |
| "Certified values are total mass fractions; EPA 3051A/3015A are leaching methods. Expected 3051A amounts use the EPA 3051A Table 1-3 measured means where they exist, else the certificate CLP study median (USEPA 200.7/3050B hot-plate leach, a proxy), else null.", | |
| "Rack 24 (8 mL vials, 5 mL fill, 0.2 g sample) is a scale-down of EPA methods written for >=45 mL vessels and 0.5 g; vessel volume and sample mass deviations are reported, not hidden.", | |
| "Shared cavity temperature: all 24 vessels see the same simulated node; no per-vessel heating, pressure, venting or acid-vapour model; the water saturation curve is only a lower bound for vessel pressure.", | |
| "Elemental volatility (Hg, As, Se, B with HF), insoluble fluorides and incomplete matrix destruction are not modelled.", | |
| ] | |
| # ---------------------------------------------------------------- library access ------------------------------------ | |
| def records() -> dict[str, dict]: | |
| return index_by_id(TEMPLATE_REL) | |
| def materials() -> dict[str, dict]: | |
| """material_id -> {name, matrix, analytes: {symbol: crm record}, recoveries: {symbol: method_recovery record}}.""" | |
| out: dict[str, dict] = {} | |
| for rec in load_library(TEMPLATE_REL)["templates"]: | |
| if rec["record_type"] == "crm_certified_value": | |
| m = out.setdefault(rec["material_id"], {"name": rec["material_name"], "matrix": rec["matrix"], "analytes": {}, "recoveries": {}}) | |
| m["analytes"][rec["analyte"]] = rec | |
| elif rec["record_type"] == "method_recovery": | |
| m = out.setdefault(rec["material_id"], {"name": rec["material_name"], "matrix": RECOVERY_MATERIAL_MATRIX.get(rec["material_id"]), | |
| "analytes": {}, "recoveries": {}}) | |
| m["recoveries"][rec["analyte"]] = rec | |
| return out | |
| def methods() -> dict[str, dict]: | |
| return {k: v for k, v in records().items() if v["record_type"] == "digestion_method"} | |
| def _water_curve() -> dict | None: | |
| return records().get("water_saturation_pressure_373_573K") | |
| def water_saturation_pressure_pa(temperature_k: float) -> float | None: | |
| """Linear interpolation in the cached IAPWS-95 (NIST WebBook) table, 373.15-573.15 K; None outside.""" | |
| c = _water_curve() | |
| if not c: | |
| return None | |
| ts, ps = c["temperature_K"], c["saturation_pressure_Pa"] | |
| if not ts[0] <= temperature_k <= ts[-1]: | |
| return None | |
| for i in range(1, len(ts)): | |
| if temperature_k <= ts[i]: | |
| f = (temperature_k - ts[i - 1]) / (ts[i] - ts[i - 1]) | |
| return ps[i - 1] + f * (ps[i] - ps[i - 1]) | |
| return ps[-1] | |
| # ---------------------------------------------------------------- schemas ------------------------------------------ | |
| def _obj(props: dict, required: list | None = None) -> dict: | |
| return {"type": "object", "properties": props, "required": list(props) if required is None else required, "additionalProperties": False} | |
| def _num(unit: str, minimum=None, maximum=None, nullable=False) -> dict: | |
| s: dict[str, Any] = {"type": ["number", "null"] if nullable else "number", "x-unit": unit} | |
| if minimum is not None: | |
| s["minimum"] = minimum | |
| if maximum is not None: | |
| s["maximum"] = maximum | |
| return s | |
| TEXT = {"type": "string"} | |
| NTEXT = {"type": ["string", "null"]} | |
| BOOL = {"type": "boolean"} | |
| NBOOL = {"type": ["boolean", "null"]} | |
| SLOT = {"type": "integer", "minimum": 0, "maximum": 23, "x-unit": "1"} | |
| ANALYTE = _obj({ | |
| "analyte": TEXT, "value_category": TEXT, | |
| "certified_mass_fraction": _num("kg/kg", 0, 1, nullable=True), "expanded_uncertainty": _num("kg/kg", 0, 1, nullable=True), | |
| "basis": TEXT, "expected_mass_fraction": _num("kg/kg", 0, 1, nullable=True), "expected_mass_kg": _num("kg", 0, nullable=True), | |
| "expected_concentration_kg_m3": _num("kg/m^3", 0, nullable=True), "evidence": TEXT, "source": TEXT, "locator": TEXT, "note": NTEXT}) | |
| PROGRAM = _obj({ | |
| "target_temperature_K": _num("K"), "temperature_tolerance_K": _num("K"), "window_low_K": _num("K"), "window_high_K": _num("K"), | |
| "setpoint_K": _num("K"), "setpoint_in_window": BOOL, | |
| "required_ramp_s": _num("s"), "ramp_tolerance_s": _num("s", nullable=True), "ramp_time_max_s": _num("s", nullable=True), | |
| "heating_started_s": _num("s", nullable=True), "entered_window_s": _num("s", nullable=True), "measured_ramp_s": _num("s", nullable=True), | |
| "ramp_within_spec": NBOOL, "required_hold_s": _num("s"), "hold_in_window_s": _num("s", 0), "left_window_after_entry": BOOL, | |
| "max_indicated_temperature_K": _num("K"), "exceeded_window": BOOL, "program_complete": BOOL, | |
| "water_saturation_pressure_at_target_Pa": _num("Pa", 0, nullable=True), "reagents_boiling_below_target": {"type": "array", "items": TEXT}, | |
| "synthetic": BOOL}) | |
| EVALUATE_OUT = _obj({ | |
| "slot_index": SLOT, "material_id": TEXT, "material_name": TEXT, "matrix": TEXT, "method_id": TEXT, "method_scope": TEXT, | |
| "matrix_in_method_scope": BOOL, "sample_mass_kg": _num("kg", 0), "acid_volume_m3": _num("m^3", 0), | |
| "acid_to_sample_ratio_m3_kg": _num("m^3/kg", 0), "method_acid_to_sample_ratio_m3_kg": _num("m^3/kg", 0, nullable=True), | |
| "method_deviations": {"type": "array", "items": TEXT}, "method_conformant": BOOL, "program": PROGRAM, | |
| "expected_analytes": {"type": "array", "items": ANALYTE}, "status": {"type": "string", "enum": ["complete", "incomplete_program"]}, | |
| "template_source": TEXT, "library_sha256": TEXT, "evidence": TEXT, "synthetic": BOOL, "synthetic_parts": {"type": "array", "items": TEXT}, | |
| "limitations": {"type": "array", "items": TEXT}}) | |
| READ_OUT = _obj({"template_id": TEXT, "record_type": TEXT, "name": TEXT, "cas": NTEXT, "evidence": TEXT, "source": TEXT, | |
| "locator": NTEXT, "accessed": TEXT, "record_json": TEXT, "template_source": TEXT, "library_sha256": TEXT}) | |
| LOAD_IN = _obj({"slot_index": SLOT, "material_id": TEXT, "method_id": TEXT, | |
| "sample_mass_kg": _num("kg", 1e-6, RACK24_SAMPLE_LIMIT_KG), "acid_volume_m3": _num("m^3", 1e-7, RACK24_FILL_LIMIT_M3)}) | |
| LOAD_OUT = _obj({"slot_index": SLOT, "material_id": TEXT, "method_id": TEXT, "method_scope": TEXT, "sample_mass_kg": _num("kg"), | |
| "acid_volume_m3": _num("m^3"), "method_deviations": {"type": "array", "items": TEXT}}) | |
| ERRORS = { | |
| "UNKNOWN_REFERENCE": "template_id, material_id or method_id is not in the digestion library.", | |
| "METHOD_MATRIX_MISMATCH": "Method is written for aqueous samples (EPA 3015A) but the reference material is a solid.", | |
| "TEMPLATE_SAMPLE_REQUIRED": "No template contents declared for this rack slot.", | |
| } | |
| def capability_specs() -> dict[str, dict]: | |
| """Runtime-metadata entries in the same shape as export_multiwave_7101_metadata() capabilities.""" | |
| load_pre = [{"description_zh": "门打开且微波加热关闭(装样时)。", "state_ids": ["door.closed", "microwave.enabled"], "enforced_by": "adapter", | |
| "check": "not door.closed and not microwave.enabled"}, | |
| {"description_zh": "该槽位已放入消解管(rack.set_slot occupied=True)。", "state_ids": ["rack.occupied_slots"], "enforced_by": "adapter", | |
| "check": "rack.occupied_slots[slot_index]"}] | |
| eval_pre = [{"description_zh": "该槽位已声明模板内容。", "state_ids": [], "enforced_by": "adapter", "check": "slot has digestion.load_template contents"}] | |
| common = {"availability": "implemented", "visibility": "agent", "scene_backend_required": False, | |
| "completion_criterion_zh": "同步返回;不推进宿主时钟,不改变热状态。"} | |
| return { | |
| "template.read": {**common, "kind": "query", "description_zh": "按模板ID读取公开参考记录(EPA方法程序、NIST SRM认证值、试剂性质);不透露任何消解管内容。", | |
| "component_ids": ["controller"], "input_schema": _obj({"template_id": TEXT}), "output_schema": READ_OUT, | |
| "example_arguments": [{"template_id": "epa_3051a_hno3"}], "observes": [], "state_effects": [], "preconditions": [], | |
| "binding": "basic40_runtime_thermal.Multiwave7101Session.invoke(instance_id=..., capability_id='template.read', arguments={'template_id': ...}, request_id=...)"}, | |
| "digestion.load_template": {**common, "kind": "configuration", "description_zh": "声明某槽消解管的内容:标准物质ID、称样量、酸体积与EPA方法ID;只记录过程模板,不改热容或功率。", | |
| "component_ids": ["rack"], "input_schema": LOAD_IN, "output_schema": LOAD_OUT, | |
| "example_arguments": [{"slot_index": 0, "material_id": "nist_srm_2711a", "method_id": "epa_3051a_hno3", "sample_mass_kg": 0.0002, "acid_volume_m3": 4e-06}], | |
| "observes": [], "state_effects": [], "preconditions": load_pre, | |
| "binding": "basic40_runtime_thermal.Multiwave7101Session.invoke(instance_id=..., capability_id='digestion.load_template', arguments=..., request_id=...)"}, | |
| "digestion.evaluate": {**common, "kind": "analysis", "description_zh": "对照方法温窗、升温与保持时间检查已运行的显示温度历史,并按证书/EPA回收率表列出消解液中预期的分析元素。", | |
| "component_ids": ["controller", "rack"], "input_schema": _obj({"slot_index": SLOT}), "output_schema": EVALUATE_OUT, | |
| "example_arguments": [{"slot_index": 0}], "observes": ["thermal.indicated_temperature_k", "thermal.target_k"], "state_effects": [], | |
| "preconditions": eval_pre, | |
| "binding": "basic40_runtime_thermal.Multiwave7101Session.invoke(instance_id=..., capability_id='digestion.evaluate', arguments={'slot_index': 0}, request_id=...)"}, | |
| } | |
| # ---------------------------------------------------------------- capability handlers ------------------------------- | |
| class Rejected(Exception): | |
| def __init__(self, code: str): | |
| super().__init__(code) | |
| self.code = code | |
| def _finite(x) -> bool: | |
| return type(x) in (int, float) and math.isfinite(x) | |
| def template_read(args: dict) -> dict: | |
| tid = args.get("template_id") | |
| if not isinstance(tid, str): | |
| raise Rejected("INVALID_ARGUMENT") | |
| rec = records().get(tid) | |
| if rec is None: | |
| raise Rejected("UNKNOWN_REFERENCE") | |
| prov = provenance(TEMPLATE_REL, rec) | |
| return {"template_id": tid, "record_type": rec["record_type"], "name": rec.get("name") or tid, "cas": rec.get("cas"), | |
| "evidence": rec.get("evidence") or "", "source": rec.get("source") or "", "locator": rec.get("locator"), | |
| "accessed": rec.get("accessed") or "", "record_json": json.dumps(rec, ensure_ascii=False, sort_keys=True), | |
| "template_source": prov["template_source"], "library_sha256": prov["library_sha256"]} | |
| def _method_volume(method: dict) -> float: | |
| return sum(r.get("volume_m3") or 0.0 for r in method["reagents"]) | |
| def _method_ratio(method: dict) -> float | None: | |
| mass = (method.get("max_sample_mass_kg") or {}) | |
| solid = mass.get("soils_sediments_sludges") or mass.get("soils_ash_sediments_sludges_siliceous_wastes") | |
| return _method_volume(method) / solid if solid else None | |
| def plan(args: dict) -> dict: | |
| """Validate digestion.load_template arguments; returns the slot record (no state is touched here).""" | |
| slot, mid, meth, mass, vol = (args.get(k) for k in ("slot_index", "material_id", "method_id", "sample_mass_kg", "acid_volume_m3")) | |
| if type(slot) is not int or not 0 <= slot <= 23 or not isinstance(mid, str) or not isinstance(meth, str): | |
| raise Rejected("INVALID_ARGUMENT") | |
| if not _finite(mass) or not 1e-6 <= mass <= RACK24_SAMPLE_LIMIT_KG or not _finite(vol) or not 1e-7 <= vol <= RACK24_FILL_LIMIT_M3: | |
| raise Rejected("INVALID_ARGUMENT") | |
| if mid not in materials() or meth not in methods(): | |
| raise Rejected("UNKNOWN_REFERENCE") | |
| method, material = methods()[meth], materials()[mid] | |
| if method.get("sample_volume_m3") is not None: # EPA 3015A: aqueous samples only | |
| raise Rejected("METHOD_MATRIX_MISMATCH") | |
| deviations = [] | |
| min_vol = (method.get("vessel_requirements") or {}).get("min_internal_volume_m3") | |
| if min_vol and RACK24_VIAL_VOLUME_M3 < min_vol: | |
| deviations.append(f"vessel 8 mL below method minimum internal volume {min_vol * 1e6:g} mL (Rack 24 scale-down)") | |
| ratio, method_ratio = vol / mass, _method_ratio(method) | |
| if method_ratio and ratio < method_ratio * (1 - 1e-9): | |
| deviations.append(f"acid/sample ratio {ratio:.4g} m^3/kg below method {method_ratio:.4g} m^3/kg") | |
| scope_words = SOLID_MATRIX_TO_METHOD.get(material["matrix"], ()) | |
| if not any(w in method.get("matrices", []) for w in scope_words): | |
| deviations.append(f"matrix '{material['matrix']}' not listed in {method.get('method', meth)} scope") | |
| return {"slot_index": slot, "material_id": mid, "method_id": meth, "sample_mass_kg": float(mass), "acid_volume_m3": float(vol), | |
| "method_deviations": deviations, "heating_started_s": None, "entered_window_s": None, "hold_in_window_s": 0.0, | |
| "left_window_after_entry": False, "max_indicated_temperature_K": None, "exceeded_window": False} | |
| def load_result(rec: dict) -> dict: | |
| return {"slot_index": rec["slot_index"], "material_id": rec["material_id"], "method_id": rec["method_id"], | |
| "method_scope": methods()[rec["method_id"]]["scope"], "sample_mass_kg": rec["sample_mass_kg"], | |
| "acid_volume_m3": rec["acid_volume_m3"], "method_deviations": list(rec["method_deviations"])} | |
| def _window(method: dict) -> tuple[float, float]: | |
| p = method["program"] | |
| return p["target_temperature_K"] - p["temperature_tolerance_K"], p["target_temperature_K"] + p["temperature_tolerance_K"] | |
| def _expected(material: dict, method: dict, rec: dict, complete: bool) -> list[dict]: | |
| out = [] | |
| mass, vol, scope, mid = rec["sample_mass_kg"], rec["acid_volume_m3"], method["scope"], rec["method_id"] | |
| symbols = sorted(set(material["analytes"]) | set(material["recoveries"])) | |
| for sym in symbols: | |
| crm, recov = material["analytes"].get(sym), material["recoveries"].get(sym) | |
| if crm is not None: | |
| total, unc, cat, src, loc = crm["value"], crm.get("expanded_uncertainty"), crm["value_category"], crm["source"], crm.get("locator") or "" | |
| else: | |
| t = recov["results"]["total"] | |
| total, unc, cat, src, loc = t["mean"], t.get("uncertainty"), t.get("value_category") or "certified", recov["source"], recov.get("locator") or "" | |
| frac, basis, evidence, note = None, "", "measured", None | |
| if scope == "total": | |
| frac, basis = total, "certified_total (method claims total decomposition)" | |
| elif recov is not None and mid in recov["results"]: | |
| frac, basis, evidence = recov["results"][mid]["mean"], f"EPA 3051A measured mean ({mid})", "measured_literature" | |
| src, loc = recov["source"], recov.get("locator") or "" | |
| elif crm is not None and crm.get("leachable"): | |
| key, leach = next(iter(crm["leachable"].items())) | |
| frac, basis, evidence = leach["median"], f"leachable proxy: {key} median", "measured_literature" | |
| note = "hot-plate CLP leach (USEPA 200.7/3050B), used as a proxy for microwave 3051A (3051A Sec. 1.1 mimics 3050)" | |
| loc = f"{loc}; {leach.get('source_locator', '')}" | |
| else: | |
| basis, note = "not_documented", "acid-leachable fraction not documented for this material/method; certified total is an upper bound" | |
| if not complete: | |
| note = "program incomplete: hold time in method window not reached" + (f"; {note}" if note else "") | |
| exp_frac = frac if complete else None | |
| out.append({"analyte": sym, "value_category": cat, "certified_mass_fraction": total, "expanded_uncertainty": unc, "basis": basis, | |
| "expected_mass_fraction": exp_frac, "expected_mass_kg": None if exp_frac is None else exp_frac * mass, | |
| "expected_concentration_kg_m3": None if exp_frac is None else exp_frac * mass / vol, | |
| "evidence": evidence, "source": src, "locator": loc, "note": note}) | |
| return out | |
| def evaluate(rec: dict, state: dict) -> dict: | |
| method, material = methods()[rec["method_id"]], materials()[rec["material_id"]] | |
| p = method["program"] | |
| lo, hi = _window(method) | |
| complete = rec["hold_in_window_s"] >= p["hold_time_s"] - 1e-9 | |
| ramp = None if rec["entered_window_s"] is None or rec["heating_started_s"] is None else rec["entered_window_s"] - rec["heating_started_s"] | |
| if ramp is None: | |
| ramp_ok = None | |
| elif p.get("ramp_tolerance_s") is not None: | |
| ramp_ok = abs(ramp - p["ramp_time_s"]) <= p["ramp_tolerance_s"] + 1e-9 | |
| else: | |
| ramp_ok = ramp <= (p.get("ramp_time_max_s") or p["ramp_time_s"]) + 1e-9 | |
| setpoint = float(state["thermal.target_k"]) | |
| boiling = [] | |
| for reag in method["reagents"]: | |
| r = records().get(reag["reagent_id"]) or {} | |
| bp = (r.get("values") or {}).get("azeotrope_boiling_point_K") or (r.get("values") or {}).get("boiling_point_K") | |
| if bp is not None and bp < p["target_temperature_K"]: | |
| boiling.append(f"{reag['reagent_id']} ({bp:.2f} K)") | |
| deviations = list(rec["method_deviations"]) | |
| if not lo <= setpoint <= hi: | |
| deviations.append(f"setpoint {setpoint:.2f} K outside method window {lo:.2f}-{hi:.2f} K") | |
| if ramp_ok is False: | |
| deviations.append(f"ramp {ramp:.1f} s outside method {p['ramp_time_s']:.0f} s spec") | |
| if rec["exceeded_window"]: | |
| deviations.append("indicated temperature exceeded the method window") | |
| if rec["left_window_after_entry"]: | |
| deviations.append("temperature left the window after first entry (hold interrupted)") | |
| max_t = rec["max_indicated_temperature_K"] if rec["max_indicated_temperature_K"] is not None else float(state["thermal.indicated_temperature_k"]) | |
| prov = provenance(TEMPLATE_REL, method) | |
| return { | |
| "slot_index": rec["slot_index"], "material_id": rec["material_id"], "material_name": material["name"], "matrix": material["matrix"] or "", | |
| "method_id": rec["method_id"], "method_scope": method["scope"], | |
| "matrix_in_method_scope": any(w in method.get("matrices", []) for w in SOLID_MATRIX_TO_METHOD.get(material["matrix"], ())), | |
| "sample_mass_kg": rec["sample_mass_kg"], "acid_volume_m3": rec["acid_volume_m3"], | |
| "acid_to_sample_ratio_m3_kg": rec["acid_volume_m3"] / rec["sample_mass_kg"], "method_acid_to_sample_ratio_m3_kg": _method_ratio(method), | |
| "method_deviations": deviations, "method_conformant": complete and not deviations, | |
| "program": {"target_temperature_K": p["target_temperature_K"], "temperature_tolerance_K": p["temperature_tolerance_K"], "window_low_K": lo, | |
| "window_high_K": hi, "setpoint_K": setpoint, "setpoint_in_window": lo <= setpoint <= hi, | |
| "required_ramp_s": p["ramp_time_s"], "ramp_tolerance_s": p.get("ramp_tolerance_s"), "ramp_time_max_s": p.get("ramp_time_max_s"), | |
| "heating_started_s": rec["heating_started_s"], "entered_window_s": rec["entered_window_s"], "measured_ramp_s": ramp, | |
| "ramp_within_spec": ramp_ok, "required_hold_s": p["hold_time_s"], "hold_in_window_s": rec["hold_in_window_s"], | |
| "left_window_after_entry": rec["left_window_after_entry"], "max_indicated_temperature_K": max_t, | |
| "exceeded_window": rec["exceeded_window"], "program_complete": complete, | |
| "water_saturation_pressure_at_target_Pa": water_saturation_pressure_pa(p["target_temperature_K"]), | |
| "reagents_boiling_below_target": boiling, "synthetic": True}, | |
| "expected_analytes": _expected(material, method, rec, complete), | |
| "status": "complete" if complete else "incomplete_program", | |
| "template_source": TEMPLATE_REL, "library_sha256": prov["library_sha256"], | |
| "evidence": "measured (NIST SRM certificates) / measured_literature (EPA 3051A tables, CLP study, method programs); thermal history simulated", | |
| "synthetic": False, "synthetic_parts": list(SYNTHETIC_PARTS), "limitations": list(LIMITATIONS)} | |
| def handle(cap: str, args: dict, state: dict, contents: dict | None) -> tuple[dict, dict | None]: | |
| """Return (result, new_contents_or_None). Raises Rejected with a stable code; never mutates its inputs.""" | |
| if cap == "template.read": | |
| return template_read(args), None | |
| if cap == "digestion.load_template": | |
| if state["door.closed"] or state["microwave.enabled"]: | |
| raise Rejected("PRECONDITION_FAILED") | |
| rec = plan(args) | |
| if not state["rack.occupied_slots"][rec["slot_index"]]: | |
| raise Rejected("PRECONDITION_FAILED") | |
| new = copy.deepcopy(contents or {}) | |
| new[str(rec["slot_index"])] = rec | |
| return load_result(rec), new | |
| if cap == "digestion.evaluate": | |
| slot = args.get("slot_index") | |
| if type(slot) is not int or not 0 <= slot <= 23: | |
| raise Rejected("INVALID_ARGUMENT") | |
| rec = (contents or {}).get(str(slot)) | |
| if rec is None: | |
| raise Rejected("TEMPLATE_SAMPLE_REQUIRED") | |
| return evaluate(rec, state), None | |
| raise Rejected("UNKNOWN_CAPABILITY") | |
| # ---------------------------------------------------------------- host step hook ----------------------------------- | |
| def _heating(state: dict) -> bool: | |
| return bool(state["power.enabled"] and state["microwave.enabled"] and state["door.closed"] and state["microwave.power_limit_w"] > 0) | |
| def _crossing(advance, before: dict, dt: float, level: float, rising: bool) -> float: | |
| """Earliest h in [0, dt] with indicated T(h) >= level (rising) or <= level (falling); trajectory monotone.""" | |
| def reached(h): | |
| if h <= 0: | |
| t = before["thermal.indicated_temperature_k"] | |
| else: | |
| s = copy.deepcopy(before) | |
| advance(s, h) | |
| t = s["thermal.indicated_temperature_k"] | |
| return t >= level if rising else t <= level | |
| lo, hi = 0.0, dt | |
| if reached(0.0): | |
| return 0.0 | |
| for _ in range(64): | |
| mid = 0.5 * (lo + hi) | |
| if reached(mid): | |
| hi = mid | |
| else: | |
| lo = mid | |
| if hi - lo <= 1e-9 * max(1.0, dt): | |
| break | |
| return hi | |
| def track_step(advance, inst: dict, before: dict, t0: float, dt: float) -> None: | |
| """Update every loaded slot after one host step [t0, t0+dt] (state already advanced in inst['state']).""" | |
| contents = inst.get(STATE_KEY) | |
| if not contents or dt <= 0: | |
| return | |
| after = inst["state"] | |
| T0, T1 = before["thermal.indicated_temperature_k"], after["thermal.indicated_temperature_k"] | |
| heating = _heating(before) | |
| for rec in contents.values(): | |
| method = methods()[rec["method_id"]] | |
| lo, hi = _window(method) | |
| hold_done_before = rec["hold_in_window_s"] >= method["program"]["hold_time_s"] - 1e-9 | |
| if heating and rec["heating_started_s"] is None: | |
| rec["heating_started_s"] = t0 | |
| if T1 >= T0: # rising or flat | |
| if T1 < lo or T0 > hi: | |
| enter = exit_ = None | |
| else: | |
| enter = 0.0 if T0 >= lo else _crossing(advance, before, dt, lo, True) | |
| exit_ = dt if T1 <= hi else _crossing(advance, before, dt, hi + 1e-9, True) | |
| else: # falling | |
| if T0 < lo or T1 > hi: | |
| enter = exit_ = None | |
| else: | |
| enter = 0.0 if T0 <= hi else _crossing(advance, before, dt, hi, False) | |
| exit_ = dt if T1 >= lo else _crossing(advance, before, dt, lo - 1e-9, False) | |
| inside = 0.0 if enter is None else max(0.0, exit_ - enter) | |
| if inside > 0: | |
| if rec["entered_window_s"] is None: | |
| rec["entered_window_s"] = t0 + enter | |
| rec["hold_in_window_s"] += inside | |
| hold_done = rec["hold_in_window_s"] >= method["program"]["hold_time_s"] - 1e-9 | |
| if rec["entered_window_s"] is not None and (T1 < lo or T1 > hi) and not (hold_done_before or (hold_done and T1 < lo)): | |
| rec["left_window_after_entry"] = True # left before the hold was complete (normal cool-down afterwards is not flagged) | |
| peak = max(T0, T1) | |
| rec["max_indicated_temperature_K"] = peak if rec["max_indicated_temperature_K"] is None else max(rec["max_indicated_temperature_K"], peak) | |
| if peak > hi: | |
| rec["exceeded_window"] = True | |