GraphResidual-data / data_benchmark /audit /source_column_inventory.tsv
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source_file row_count delimiter columns mutation_fields ptm_site_fields effect_fields reference_fields read_error
clinvar/variant_summary.txt.gz 8992046 tab #AlleleID|Type|Name|GeneID|GeneSymbol|HGNC_ID|ClinicalSignificance|ClinSigSimple|LastEvaluated|RS# (dbSNP)|nsv/esv (dbVar)|RCVaccession|PhenotypeIDS|PhenotypeList|Origin|OriginSimple|Assembly|ChromosomeAccession|Chromosome|Start|Stop|ReferenceAllele|AlternateAllele|Cytogenetic|ReviewStatus|NumberSubmitters|Guidelines|TestedInGTR|OtherIDs|SubmitterCategories|VariationID|PositionVCF|ReferenceAlleleVCF|AlternateAlleleVCF|SomaticClinicalImpact|SomaticClinicalImpactLastEvaluated|ReviewStatusClinicalImpact|Oncogenicity|OncogenicityLastEvaluated|ReviewStatusOncogenicity|SCVsForAggregateGermlineClassification|SCVsForAggregateSomaticClinicalImpact|SCVsForAggregateOncogenicityClassification RS# (dbSNP)|VariationID PositionVCF ReferenceAllele|ReferenceAlleleVCF
ptmd/unzipped/PTMD2_Acetylation.csv 16157 comma UniProt|Position|Type|State|Disease|MutationSite|Source|Residue|Is_experimental_verification|Enzyme|Gene name|PMID|Sentence|CellType|PDAs_id|Class MutationSite Position|Residue State Source|PMID|PDAs_id
ptmd/unzipped/PTMD2_Phosphorylation.csv 196146 comma UniProt|Position|Type|State|Disease|PDAs_id|MutationSite|Source|Residue|Is_experimental_verification|Enzyme|Gene name|PMID|Sentence|CellType|Class MutationSite Position|Residue State PDAs_id|Source|PMID
ptmd/unzipped/PTMD2_Ubiquitination.csv 93392 comma UniProt|Position|Type|State|Disease|MutationSite|Source|Residue|Is_experimental_verification|Enzyme|Gene name|PMID|Sentence|CellType|PDAs_id|Class MutationSite Position|Residue State Source|PMID|PDAs_id
reactome/ReactomePathways.txt 23602 tab R-BTA-73843|5-Phosphoribose 1-diphosphate biosynthesis|Bos taurus
reactome/ReactomePathwaysRelation.txt 23716 tab R-BTA-109581|R-BTA-109606
reactome/UniProt2Reactome_All_Levels.txt 942791 tab A0A023GPK8|R-DME-1500931|https://reactome.org/PathwayBrowser/#/R-DME-1500931|Cell-Cell communication|IEA|Drosophila melanogaster