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def add_module(self, module_name, module_ui): m_button = tk.Label(self.module_selection, text=module_name, bg="white", anchor="w") m_button.grid(column=0, row=len(self.module_selection.winfo_children()), padx=0, pady=0, sticky="W E N S") self.module_buttons[module_name] = m_button ...
Adds a module to the list Args: module_name (str): The name of the module module_ui: The function to call to create the module's UI
juraj-google-style
def _PrintExtractionStatusUpdateLinear(self, processing_status): for worker_status in processing_status.workers_status: status_line = '{0:s} (PID: {1:d}) - events produced: {2:d} - file: {3:s} - running: {4!s}\n'.format(worker_status.identifier, worker_status.pid, worker_status.number_of_produced_events, wo...
Prints an extraction status update in linear mode. Args: processing_status (ProcessingStatus): processing status.
codesearchnet
def status(self, job_ids): statuses = [] for job_id in job_ids: instance = self.client.instances().get(instance=job_id, project=self.project_id, zone=self.zone).execute() self.resources[job_id]['status'] = translate_table[instance['status']] statuses.append(t...
Get the status of a list of jobs identified by the job identifiers returned from the submit request. Args: - job_ids (list) : A list of job identifiers Returns: - A list of status from ['PENDING', 'RUNNING', 'CANCELLED', 'COMPLETED', 'FAILED', 'TIMEOUT'] corresponding to each job_id in the job_ids list. Raises: - Ex...
juraj-google-style
def _compute_inside_group(df): inside_group = df.copy() inside_group['type'] = 'child' inside_group['variation'] = inside_group['value'] / inside_group[ 'value_start'] inside_group.drop(['upperGroup_label', 'insideGroup', 'value_start'], axis=1, inplace=True) insid...
Compute inside Group Args: df(dataframe): Returns: Dataframe
juraj-google-style
def encode(self, builder: expressions.Builder, select_scalars_as_array: bool=True, use_resource_alias: bool=False) -> str: self._use_resource_alias = use_resource_alias result = self.visit(builder.node) if select_scalars_as_array or _fhir_path_data_types.returns_collection(builder.node.return_type): ...
Returns a Standard SQL encoding of a FHIRPath expression. If select_scalars_as_array is True, the resulting Standard SQL encoding always returns a top-level `ARRAY`, whose elements are non-`NULL`. Otherwise the resulting SQL will attempt to return a scalar when possible and only return an `ARRAY` for actual collection...
github-repos
def _is_node_return_ended(self, node): if isinstance(node, astroid.Return): return True if isinstance(node, astroid.Call): try: funcdef_node = node.func.inferred()[0] if self._is_function_def_never_returning(funcdef_node): ...
Check if the node ends with an explicit return statement. Args: node (astroid.NodeNG): node to be checked. Returns: bool: True if the node ends with an explicit statement, False otherwise.
juraj-google-style
def xw_plus_b_v1(x, weights, biases, name=None): with ops.name_scope(name, 'xw_plus_b_v1', [x, weights, biases]) as name: x = ops.convert_to_tensor(x, name='x') weights = ops.convert_to_tensor(weights, name='weights') biases = ops.convert_to_tensor(biases, name='biases') mm = math_op...
Computes matmul(x, weights) + biases. This is a deprecated version of that will soon be removed. Args: x: a 2D tensor. Dimensions typically: batch, in_units weights: a 2D tensor. Dimensions typically: in_units, out_units biases: a 1D tensor. Dimensions: out_units name: A name for the operation (optional). If not ...
github-repos
def serializable_value(self, obj): value = self.__get__(obj, obj.__class__) return self.property.serialize_value(value)
Produce the value as it should be serialized. Sometimes it is desirable for the serialized value to differ from the ``__get__`` in order for the ``__get__`` value to appear simpler for user or developer convenience. Args: obj (HasProps) : the object to get the serialized attribute for Returns: JSON-like
codesearchnet
def is_control(input, model_file=None, model_proto=None, name=None): return _gen_sentencepiece_processor_op.sentencepiece_get_piece_type( input, model_file=model_file, model_proto=model_proto, name=name, piece_type=1)
Returns true if input id is control piece. Args: input: An arbitrary tensor of int32. model_file: The sentencepiece model file path. model_proto: The sentencepiece model serialized proto. Either `model_file` or `model_proto` must be set. name: The name argument that is passed to the op function. Returns: A tensor of b...
juraj-google-style
def set_hash_value(self, key, field, value, pipeline=False): if pipeline: self._pipeline.hset(key, field, str(value)) else: self._db.hset(key, field, str(value))
Set the value of field in a hash stored at key. Args: key (str): key (name) of the hash field (str): Field within the hash to set value: Value to set pipeline (bool): True, start a transaction block. Default false.
codesearchnet
def get_command_from_result(script, result, debug=False): if (not debug): command = (((('python waf --run "' + script) + ' ') + ' '.join([('--%s=%s' % (param, value)) for (param, value) in result['params'].items()])) + '"') else: command = ((((('python waf --run ' + script) + ' --command-templat...
Return the command that is needed to obtain a certain result. Args: params (dict): Dictionary containing parameter: value pairs. debug (bool): Whether the command should include the debugging template.
codesearchnet
async def debug(self, conn_id, name, cmd_args): device = self._get_property(conn_id, 'device') retval = None try: if name == 'dump_state': retval = device.dump_state() elif name == 'restore_state': state = cmd_args['snapshot'] ...
Asynchronously complete a named debug command. The command name and arguments are passed to the underlying device adapter and interpreted there. Args: conn_id (int): A unique identifer that will refer to this connection name (string): the name of the debug command we want to invoke cmd_args (dict): any arguments that...
juraj-google-style
async def update_flags(self, messages: Sequence[MessageT], flag_set: FrozenSet[Flag], mode: FlagOp) -> None: ...
Update the permanent flags of each messages. Args: messages: The message objects. flag_set: The set of flags for the update operation. flag_op: The mode to change the flags.
juraj-google-style
def parse(self, filepath, content): try: parsed = json.loads(content) except ValueError: msg = "No JSON object could be decoded from file: {}" raise SettingsBackendError(msg.format(filepath)) return parsed
Parse opened settings content using JSON parser. Args: filepath (str): Settings object, depends from backend content (str): Settings content from opened file, depends from backend. Raises: boussole.exceptions.SettingsBackendError: If parser can not decode a valid JSON object. Returns: dict: Dictionnary containing pa...
juraj-google-style
def ParseFileObject(self, parser_mediator, file_object): scca_file = pyscca.file() try: scca_file.open_file_object(file_object) except IOError as exception: parser_mediator.ProduceExtractionWarning( 'unable to open file with error: {0!s}'.format(exception)) return form...
Parses a Windows Prefetch file-like object. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. file_object (dfvfs.FileIO): file-like object.
juraj-google-style
def export_model(self, export_formats, export_dir=None): export_dir = (export_dir or self.logdir) return self._export_model(export_formats, export_dir)
Exports model based on export_formats. Subclasses should override _export_model() to actually export model to local directory. Args: export_formats (list): List of formats that should be exported. export_dir (str): Optional dir to place the exported model. Defaults to self.logdir. Return: A dict that maps ExportForm...
codesearchnet
def map_texture_to_surface(texture, surface): texture_x, texture_y = texture surface_h, surface_w = surface.shape surface_x = np.clip( np.int32(surface_w * texture_x - 1e-9), 0, surface_w - 1) surface_y = np.clip( np.int32(surface_h * texture_y - 1e-9), 0, surface_h - 1) surfa...
Returns values on a surface for points on a texture. Args: texture (texture): the texture to trace over the surface surface (surface): the surface to trace along Returns: an array of surface heights for each point in the texture. Line separators (i.e. values that are ``nan`` in the texture) will be ``nan`` in the out...
juraj-google-style
def _is_definition_section(source): try: definitions = textwrap.dedent(source).split('\n', 1)[1].splitlines() return all( re.match(r'\s\s+((?!\s\s).+)\s\s+.+', s) for s in definitions) except IndexError: return False
Determine if the source is a definition section. Args: source: The usage string source that may be a section. Returns: True if the source describes a definition section; otherwise, False.
juraj-google-style
def broadcast_row_partition(self, rp): if not rp.is_uniform(): return RowPartition.from_row_lengths(self.broadcast_tensor(rp.row_lengths())) else: return RowPartition.from_uniform_row_length(rp.uniform_row_length(), nvals=rp.uniform_row_length() * self.dest_nrows(), nrows=self.dest_nrows())
Return a new shape where the rows are broadcasted. *--self--->* | | rp result | | V V *--------->* This is equivalent to: return RowPartition.from_row_lengths(self.broadcast(rp.row_lengths())) However, if the shape has uniform row length, then that property is maintained. Args: rp: ...
github-repos
def add_pending(self, panel_obj, hgnc_gene, action, info=None): valid_actions = ['add', 'delete', 'edit'] if (action not in valid_actions): raise ValueError('Invalid action {0}'.format(action)) info = (info or {}) pending_action = {'hgnc_id': hgnc_gene['hgnc_id'], 'action': action, 'info': info,...
Add a pending action to a gene panel Store the pending actions in panel.pending Args: panel_obj(dict): The panel that is about to be updated hgnc_gene(dict) action(str): choices=['add','delete','edit'] info(dict): additional gene info (disease_associated_transcripts, reduced_penetrance, mosaicism, database_entry_vers...
codesearchnet
def embed(self, x): shape_x = common_layers.shape_list(x) x_flat = tf.reshape(x, [-1, 1]) c = self.int_to_bit(x_flat, num_bits=self.hparams.z_size, base=2) shape = common_layers.shape_list(c) new_shape = shape new_shape.append(self.hparams.num_blocks) new_shape.append(int(self.hparams.z...
Embedding function that takes discrete latent and returns embedding. Args: x: Input to the discretization bottleneck. Returns: Continuous embedding to be passed on to the decoder. Raises: ValueError: For unknown or missing arguments.
juraj-google-style
def download_aspera(self, user, host, silent=False): aspera_home = os.environ.get('ASPERA_HOME', None) if (not aspera_home): raise ValueError('environment variable $ASPERA_HOME not set') if (not os.path.exists(aspera_home)): raise ValueError('$ASPERA_HOME directory {} does not exist'.format(...
Download file with Aspera Connect. For details see the documentation ov Aspera Connect Args: user (:obj:`str`): FTP user. host (:obj:`str`): FTP host. Defaults to "ftp-trace.ncbi.nlm.nih.gov".
codesearchnet
def build_as_function_and_v1_graph(func: Callable[..., Any]) -> Callable[..., None]: if tf_inspect.isclass(func): raise ValueError('`run_in_graph_mode_and_function` only supports test methods.') @parameterized.named_parameters(('_v1_graph', 'v1_graph'), ('_function', 'function')) @functools.wraps(f...
Run a test case in v1 graph mode and inside tf.function in eager mode. WARNING: This decorator can only be used in test cases that statically checks generated graph. Attempting to evaluate graph or function results via. session.run() or self.evaluate() will fail. WARNING: This decorator can only be used for test case...
github-repos
def _ScheduleTasks(self, storage_writer): logger.debug('Task scheduler started') self._status = definitions.STATUS_INDICATOR_RUNNING event_source_heap = _EventSourceHeap() self._FillEventSourceHeap(storage_writer, event_source_heap, start_with_first=True) event_source = event_source_heap.PopEventSou...
Schedules tasks. Args: storage_writer (StorageWriter): storage writer for a session storage.
codesearchnet
def _open_ring_2d(x_size: int, y_size: int, z_coord: int) -> List[Tuple[int, int, int]]: ret = [] for i in range(y_size for j in range(1, x_size): ret.append((j, 2 * i, z_coord)) for j in range(x_size - 1, 0, -1): ret.append((j, 2 * i + 1, z_coord)) for i in range(y_...
Ring-order of a X by Y mesh, with a fixed Z coordinate. For example, in a 4x4 mesh, this returns the following order. 0 -- 1 -- 2 -- 3 | | | | 15-- 6 -- 5 -- 4 | | | | 14-- 7 -- 8 -- 9 | | | | 13-- 12-- 11-- 10 Note that chip 0 is not included in the output. Args: x_size: An integer repres...
github-repos
def parse_sv_frequencies(variant): frequency_keys = [ 'clingen_cgh_benignAF', 'clingen_cgh_benign', 'clingen_cgh_pathogenicAF', 'clingen_cgh_pathogenic', 'clingen_ngi', 'clingen_ngiAF', 'swegen', 'swegenAF', 'decipherAF', 'decipher...
Parsing of some custom sv frequencies These are very specific at the moment, this will hopefully get better over time when the field of structural variants is more developed. Args: variant(cyvcf2.Variant) Returns: sv_frequencies(dict)
juraj-google-style
def has_no_title(self, title, **kwargs): try: self.assert_no_title(title, **kwargs) return True except ExpectationNotMet: return False
Checks if the page doesn't have the given title. Args: title (str | RegexObject): The string that the title should include. **kwargs: Arbitrary keyword arguments for :class:`TitleQuery`. Returns: bool: Whether it doesn't match.
juraj-google-style
def namespace_for_prefix(self, prefix): try: ni = self.__lookup_prefix(prefix) except PrefixNotFoundError: return None else: return ni.uri
Get the namespace the given prefix maps to. Args: prefix (str): The prefix Returns: str: The namespace, or None if the prefix isn't mapped to anything in this set.
juraj-google-style
def schema_from_json(self, file_or_path): if isinstance(file_or_path, io.IOBase): return self._schema_from_json_file_object(file_or_path) with open(file_or_path) as file_obj: return self._schema_from_json_file_object(file_obj)
Takes a file object or file path that contains json that describes a table schema. Returns: List of schema field objects.
codesearchnet
def video_augmentation(features, hue=False, saturate=False, contrast=False): (inputs, targets) = (features['inputs'], features['targets']) in_steps = common_layers.shape_list(inputs)[0] video = tf.concat((inputs, targets), axis=0) if hue: video = tf.image.random_hue(video, max_delta=0.2) if ...
Augments video with optional hue, saturation and constrast. Args: features: dict, with keys "inputs", "targets". features["inputs"], 4-D Tensor, shape=(THWC) features["targets"], 4-D Tensor, shape=(THWC) hue: bool, apply hue_transform. saturate: bool, apply saturation transform. contrast: bool, apply constrast transfo...
codesearchnet
def minimize(self, minimize): self._minimize = minimize self._logger.log('debug', 'Minimize set to {}'.format(minimize))
Configures the ABC to minimize fitness function return value or derived score Args: minimize (bool): if True, minimizes fitness function return value; if False, minimizes derived score
juraj-google-style
def dump(o, f): if (not f.write): raise TypeError('You can only dump an object to a file descriptor') d = dumps(o) f.write(d) return d
Writes out dict as toml to a file Args: o: Object to dump into toml f: File descriptor where the toml should be stored Returns: String containing the toml corresponding to dictionary Raises: TypeError: When anything other than file descriptor is passed
codesearchnet
def get_axis_value(self, axis): if (self.type != EventType.POINTER_AXIS): raise AttributeError(_wrong_meth.format(self.type)) return self._libinput.libinput_event_pointer_get_axis_value(self._handle, axis)
Return the axis value of the given axis. The interpretation of the value depends on the axis. For the two scrolling axes :attr:`~libinput.constant.PointerAxis.SCROLL_VERTICAL` and :attr:`~libinput.constant.PointerAxis.SCROLL_HORIZONTAL`, the value of the event is in relative scroll units, with the positive direction b...
codesearchnet
def list_pull_requests(self, username, page, status=None): request_url = '{}/api/0/user/{}/requests/filed'.format(self.instance, username) payload = {} if (username is not None): payload['username'] = username if (page is not None): payload['page'] = page if (status is not None): ...
List pull-requests filed by user. Params: username (string): filters the username of the user whose activity you are interested in. page (integer): the page requested. Defaults to 1. status (string): filter the status of pull requests. Default: Open, can be Closed, Merged, All. Returns: list: A list of Pull-Requests ...
codesearchnet
def find_primitive(self): (lattice, scaled_positions, numbers) = spglib.find_primitive(self._cell, symprec=self._symprec) species = [self._unique_species[(i - 1)] for i in numbers] return Structure(lattice, species, scaled_positions, to_unit_cell=True).get_reduced_structure()
Find a primitive version of the unit cell. Returns: A primitive cell in the input cell is searched and returned as an Structure object. If no primitive cell is found, None is returned.
codesearchnet
def _hard_upsample(self, hidden_states, durations): if hidden_states.size(0) == 1: hidden_states = torch.repeat_interleave(hidden_states, durations.view(-1), dim=1) else: if hidden_states.shape[0] > 1 and self.training: logger.warning_once('`self.training=True` and you use batching. ...
Repeats the time dimension of each sample in the batch based on the corresponding duration. Args: hidden_states (`torch.Tensor` of shape `(batch_size, sequence_length, *)`, *optional*): The sequence to repeat, where `*` is any number of sequence-specific dimensions including none. durations (`torch.Tensor` of shape `(...
github-repos
def _update_inplace(self, new_query_compiler): old_query_compiler = self._query_compiler self._query_compiler = new_query_compiler old_query_compiler.free()
Updates the current DataFrame inplace. Args: new_query_compiler: The new QueryCompiler to use to manage the data
juraj-google-style
def write_config_file(config_instance, appdirs=DEFAULT_APPDIRS, file_name=DEFAULT_CONFIG_FILENAME): path = get_config_path(appdirs, file_name) with open(path, 'w') as fobj: config_instance.write(fobj) return config_instance
Write a ConfigParser instance to file at the correct location. Args: config_instance: Config instance to safe to file. appdirs (HamsterAppDirs, optional): ``HamsterAppDirs`` instance storing app/user specific path information. file_name (text_type, optional): Name of the config file. Defaults to ``DEFAULT_CONFIG_FILEN...
juraj-google-style
def _get_corrupted_example(self, x): corruption_type = self.builder_config.corruption_type severity = self.builder_config.severity return {'gaussian_noise': corruptions.gaussian_noise, 'shot_noise': corruptions.shot_noise, 'impulse_noise': corruptions.impulse_noise, 'defocus_blur': corruptions.defocus_blur,...
Return corrupted images. Args: x: numpy array, uncorrupted image. Returns: numpy array, corrupted images.
codesearchnet
def cos(times: np.ndarray, amp: complex, freq: float, phase: float=0) -> np.ndarray: return (amp * np.cos(((((2 * np.pi) * freq) * times) + phase)).astype(np.complex_))
Continuous cosine wave. Args: times: Times to output wave for. amp: Pulse amplitude. freq: Pulse frequency, units of 1/dt. phase: Pulse phase.
codesearchnet
def CreateUnit(self, parent=None, value=None, bid_amount=None): unit = {'xsi_type': 'ProductPartition', 'partitionType': 'UNIT'} if (parent is not None): unit['parentCriterionId'] = parent['id'] unit['caseValue'] = value if ((bid_amount is not None) and (bid_amount > 0)): bidding_str...
Creates a unit node. Args: parent: The node that should be this node's parent. value: The value being partitioned on. bid_amount: The amount to bid for matching products, in micros. Returns: A new unit node.
codesearchnet
def normalize(code): if (len(code) == 3): return code normalized = translate(code) if normalized: return normalized country = countries.get(code, None) if country: return country.alpha3.lower() return code
Normalize language codes to ISO 639-2. If all conversions fails, return the `code` as it was given. Args: code (str): Language / country code. Returns: str: ISO 639-2 country code.
codesearchnet
def unpack_small_tensors(tower_grads, packing): if not packing: return tower_grads new_tower_grads = [] num_devices = len(tower_grads) num_packed = len(packing.keys()) for dev_idx, gv_list in enumerate(tower_grads): new_gv_list = gv_list[num_packed:] for i in xrange(0, ...
Undo the structure alterations to tower_grads done by pack_small_tensors. Args: tower_grads: List of List of (grad, var) tuples. packing: A dict generated by pack_small_tensors describing the changes it made to tower_grads. Returns: new_tower_grads: identical to tower_grads except that concatentations of small tensor...
juraj-google-style
def vcf_records(self, qualified=False): if qualified: sample_names = self.qualified_sample_names else: sample_names = self.sample_names for line in self._file_reader.read_lines(): if line.startswith(" continue yield VcfRec...
Generates parsed VcfRecord objects. Typically called in a for loop to process each vcf record in a VcfReader. VcfReader must be opened in advanced and closed when complete. Skips all headers. Args: qualified: When True, sample names are prefixed with file name Returns: Parsed VcfRecord Raises: StopIteration: when r...
juraj-google-style
def convert(self, vroot, entry_variables): self.graph_info = GraphInfo(vroot) self.entry_variables = entry_variables cnt = 0 with nn.parameter_scope(self.name): for t, func in enumerate(self.graph_info.funcs): if func.name == "BatchNorma...
All functions are replaced with the same `new` function. Args: vroot (:obj:`Variable`): NNabla Variable entry_variables (:obj:`Variable`): Entry variable from which the conversion starts.
juraj-google-style
def _compute_upper_group(df): upper_group = df.groupby(['groups']).agg({ 'value': sum, 'value_start': sum, 'upperGroup_label': 'first', 'upperGroup_order': 'first' }).reset_index() upper_group['type'] = 'parent' upper_group['variation'] = upper_group['value'] / upper...
Compute upperGroup Args: df (Dataframe): Returns: Dataframe
juraj-google-style
def CreateBiddingStrategy(client): bidding_strategy_service = client.GetService( 'BiddingStrategyService', version='v201809') shared_bidding_strategy = { 'name': 'Maximize Clicks %s' % uuid.uuid4(), 'biddingScheme': { 'xsi_type': 'TargetSpendBiddingScheme', ...
Creates a bidding strategy object. Args: client: AdWordsClient the client to run the example with. Returns: dict An object representing a bidding strategy.
juraj-google-style
def apply2(self, func, *args, **kwargs): ret = func(args[0], self._t, *args[1:], **kwargs) return LinearWrap(ret)
Apply a function on the wrapped tensor. The tensor will be the second argument of func. This is because many symbolic functions (such as tensorpack's layers) takes 'scope' as the first argument. Returns: LinearWrap: ``LinearWrap(func(args[0], self.tensor(), *args[1:], **kwargs))``.
codesearchnet
def _avro_rows(block, avro_schema): blockio = six.BytesIO(block.avro_rows.serialized_binary_rows) while True: try: yield fastavro.schemaless_reader(blockio, avro_schema) except StopIteration: break
Parse all rows in a stream block. Args: block ( \ ~google.cloud.bigquery_storage_v1beta1.types.ReadRowsResponse \ ): A block containing Avro bytes to parse into rows. avro_schema (fastavro.schema): A parsed Avro schema, used to deserialized the bytes in the block. Returns: Iterable[Mapping]: A sequence of rows, repre...
juraj-google-style
def execute_show(args, root_dir): key = None if args.get('key'): key = args['key'] status = command_factory('status')({}, root_dir=root_dir) if ((key not in status['data']) or (status['data'][key]['status'] != 'running')): print('No running process with this key, use `log` to...
Print stderr and stdout of the current running process. Args: args['watch'] (bool): If True, we open a curses session and tail the output live in the console. root_dir (string): The path to the root directory the daemon is running in.
codesearchnet
def compute_loss(self, model: nn.Module, inputs: dict[str, Union[torch.Tensor, Any]], return_outputs: bool=False, num_items_in_batch: Optional[torch.Tensor]=None): if (self.label_smoother is not None or self.compute_loss_func is not None) and 'labels' in inputs: labels = inputs.pop('labels') else: ...
How the loss is computed by Trainer. By default, all models return the loss in the first element. Args: model (`nn.Module`): The model to compute the loss for. inputs (`Dict[str, Union[torch.Tensor, Any]]`): The input data for the model. return_outputs (`bool`, *optional*, defaults to `False`): Whether to return the m...
github-repos
def proxy_num(self, protocol=None): http_num = len(self.proxies['http']) https_num = len(self.proxies['https']) if (protocol == 'http'): return http_num elif (protocol == 'https'): return https_num else: return (http_num + https_num)
Get the number of proxies in the pool Args: protocol (str, optional): 'http' or 'https' or None. (default None) Returns: If protocol is None, return the total number of proxies, otherwise, return the number of proxies of corresponding protocol.
codesearchnet
def get_njobs_in_queue(self, username=None): if (username is None): username = getpass.getuser() (njobs, process) = self._get_njobs_in_queue(username=username) if ((process is not None) and (process.returncode != 0)): err_msg = ('Error trying to get the number of jobs in the queue' + 'The er...
returns the number of jobs in the queue, probably using subprocess or shutil to call a command like 'qstat'. returns None when the number of jobs cannot be determined. Args: username: (str) the username of the jobs to count (default is to autodetect)
codesearchnet
def forward(self, hidden_states: torch.Tensor, attention_mask: torch.Tensor, position_embeddings: Optional[torch.Tensor]=None, output_attentions: bool=False): residual = hidden_states query = key = self.with_pos_embed(hidden_states, position_embeddings) hidden_states = self.self_attn(queries=query, keys=key...
Args: hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)` attention_mask (`torch.FloatTensor`): attention mask of size `(batch, 1, target_len, source_len)` where padding elements are indicated by very large negative values. position_embeddings (`torch.FloatTensor`, *optional*)...
github-repos
def CacheFileSystem(self, path_spec, file_system): identifier = self._GetFileSystemCacheIdentifier(path_spec) self._file_system_cache.CacheObject(identifier, file_system)
Caches a file system object based on a path specification. Args: path_spec (PathSpec): path specification. file_system (FileSystem): file system object.
codesearchnet
def insert_tokenizer_in_auto_module(old_model_patterns: ModelPatterns, new_model_patterns: ModelPatterns): if old_model_patterns.tokenizer_class is None or new_model_patterns.tokenizer_class is None: return with open(TRANSFORMERS_PATH / 'models' / 'auto' / 'tokenization_auto.py', 'r', encoding='utf-8') ...
Add a tokenizer to the relevant mappings in the auto module. Args: old_model_patterns (`ModelPatterns`): The patterns for the old model. new_model_patterns (`ModelPatterns`): The patterns for the new model.
github-repos
def load_generation_config(gen_config_arg: Union[str, GenerationConfig]) -> GenerationConfig: if isinstance(gen_config_arg, GenerationConfig): gen_config = deepcopy(gen_config_arg) else: pretrained_model_name = Path(gen_config_arg) if isinstance(gen_config_arg, str) else gen_config_arg c...
Loads a `~generation.GenerationConfig` from the `Seq2SeqTrainingArguments.generation_config` arguments. Args: gen_config_arg (`str` or [`~generation.GenerationConfig]`): `Seq2SeqTrainingArguments.generation_config` argument. Returns: A `~generation.GenerationConfig`.
github-repos
def from_linearized(first, second, intersections): (s, t, success) = segment_intersection(first.start_node, first.end_node, second.start_node, second.end_node) bad_parameters = False if success: if (not (_helpers.in_interval(s, 0.0, 1.0) and _helpers.in_interval(t, 0.0, 1.0))): bad_param...
Determine curve-curve intersection from pair of linearizations. .. note:: This assumes that at least one of ``first`` and ``second`` is not a line. The line-line case should be handled "early" by :func:`check_lines`. .. note:: This assumes the caller has verified that the bounding boxes for ``first`` and ``second``...
codesearchnet
def transform(self, path): if ((path is None) or (not path)): return None obj_parent_modules = path.split('.') objects = [obj_parent_modules.pop((- 1))] while True: try: parent_module_path = '.'.join(obj_parent_modules) parent_module = importlib.import_module(pare...
Transform a path into an actual Python object. The path can be arbitrary long. You can pass the path to a package, a module, a class, a function or a global variable, as deep as you want, as long as the deepest module is importable through ``importlib.import_module`` and each object is obtainable through the ``getattr...
codesearchnet
def list_leases(self, uuid=None): try: lease_files = os.listdir(self.path) except OSError as e: raise_from(LagoSubnetLeaseBadPermissionsException(self.path, e.strerror), e) leases = [self.create_lease_object_from_idx(lease_file.split('.')[0]) for lease_file in lease_files if (lease_file != L...
List current subnet leases Args: uuid(str): Filter the leases by uuid Returns: list of :class:~Lease: current leases
codesearchnet
async def download_cot_artifact(chain, task_id, path): link = chain.get_link(task_id) log.debug('Verifying {} is in {} cot artifacts...'.format(path, task_id)) if (not link.cot): log.warning('Chain of Trust for "{}" in {} does not exist. See above log for more details. Skipping download of this arti...
Download an artifact and verify its SHA against the chain of trust. Args: chain (ChainOfTrust): the chain of trust object task_id (str): the task ID to download from path (str): the relative path to the artifact to download Returns: str: the full path of the downloaded artifact Raises: CoTError: on failure.
codesearchnet
def _format_line(headers, fields): assert len(fields) == len(headers), (fields, headers) fields = ["%2.4f" % field if isinstance(field, float) else str(field) for field in fields] return ' '.join(' ' * max(0, len(header) - len(field)) + field for (header, field) in zip(headers, ...
Format a line of a table. Arguments: headers: A list of strings that are used as the table headers. fields: A list of the same length as `headers` where `fields[i]` is the entry for `headers[i]` in this row. Elements can be of arbitrary types. Pass `headers` to print the header row. Returns: A pretty string.
juraj-google-style
def eig_one_step(current_vector, learning_rate, vector_prod_fn): grad = 2*vector_prod_fn(current_vector) current_objective = tf.reshape(tf.matmul(tf.transpose(current_vector), grad) / 2., shape=()) grad = grad - current_vector*tf.matmul(tf.transpose(cu...
Function that performs one step of gd (variant) for min eigen value. Args: current_vector: current estimate of the eigen vector with minimum eigen value. learning_rate: learning rate. vector_prod_fn: function which returns product H*x, where H is a matrix for which we computing eigenvector. Returns: updated vector af...
juraj-google-style
def sg_regularizer_loss(scale=1.0): return (scale * tf.reduce_mean(tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES)))
r""" Get regularizer losss Args: scale: A scalar. A weight applied to regularizer loss
codesearchnet
def RegisterDefinition(self, artifact_definition): artifact_definition_name = artifact_definition.name.lower() if artifact_definition_name in self._artifact_definitions: raise KeyError( 'Artifact definition already set for name: {0:s}.'.format( artifact_definition.name)) ...
Registers an artifact definition. Artifact definitions are identified based on their lower case name. Args: artifact_definition (ArtifactDefinition): an artifact definition. Raises: KeyError: if artifact definition is already set for the corresponding name.
juraj-google-style
def __init__(self, unicodeHexValue, block): if unicodeHexValue < 0 or unicodeHexValue > 0x10FFFF: raise (ValueError, "numeric value outside Unicode range") self.unicodeHexValue = unicodeHexValue self.chr = chr(self.unicodeHexValue) self.name = unicodedata.na...
Set up a unicode character. Arguments: unicodeHexValue -- an integer that should correspond to a Unicode code point. block -- the CharacterBlock this character belongs to. Raises: ValueError -- if unicodeHexValue is not a valid code point.
juraj-google-style
def list_json_files(directory, recursive=False): json_files = [] for (top, dirs, files) in os.walk(directory): dirs.sort() paths = (os.path.join(top, f) for f in sorted(files)) json_files.extend((x for x in paths if is_json(x))) if (not recursive): break return js...
Return a list of file paths for JSON files within `directory`. Args: directory: A path to a directory. recursive: If ``True``, this function will descend into all subdirectories. Returns: A list of JSON file paths directly under `directory`.
codesearchnet
def run(self): accounts = list(AWSAccount.get_all(include_disabled=False).values()) for account in accounts: self.log.debug('Updating VPC Flow Logs for {}'.format(account)) self.session = get_aws_session(account) role_arn = self.confirm_iam_role(account) for aws_region in AWS_REG...
Main entry point for the auditor worker. Returns: `None`
codesearchnet
def multiply(x1, x2, output_shape=None, name=None): if (not isinstance(x2, Tensor)): return ScalarMultiplyOperation(x1, x2).outputs[0] with tf.name_scope(name, default_name='mul'): (x1, x2) = binary_arguments_to_tensors(x1, x2) return einsum([x1, x2], output_shape=_infer_binary_broadcast...
Binary multiplication with broadcasting. Args: x1: a Tensor x2: a Tensor output_shape: an optional Shape name: an optional string Returns: a Tensor
codesearchnet
def relu(x): if any_symbolic_tensors((x,)): return Relu().symbolic_call(x) return backend.nn.relu(x)
Rectified linear unit activation function. It is defined as `f(x) = max(0, x)`. Args: x: Input tensor. Returns: A tensor with the same shape as `x`. Example: >>> x1 = keras.ops.convert_to_tensor([-1.0, 0.0, 1.0, 0.2]) >>> keras.ops.relu(x1) array([0.0, 0.0, 1.0, 0.2], dtype=float32)
github-repos
def replace_characters(self, text, characters, replacement=''): if (not characters): return text characters = ''.join(sorted(characters)) if (characters in self._characters_regexes): characters_regex = self._characters_regexes[characters] else: characters_regex = re.compile(('[%s...
Remove characters from text. Removes custom characters from input text or replaces them with a string if specified. Args: text: The text to be processed. characters: Characters that will be replaced. replacement: New text that will replace the custom characters. Returns: The text without the given characters.
codesearchnet
def regroup(values, wrap_class=values_lib.PerReplica, always_wrap=False): v0 = values[0] if isinstance(v0, list): for v in values[1:]: assert isinstance(v, list) assert len(v) == len(v0), 'len(v) == %d, len(v0) == %d, v: %s, v0: %s' % (len(v), len(v0), v, v0) return [regr...
Makes a nest per-replica into a nest of PerReplica/Mirrored values. Args: values: Values to regroup wrap_class: Class that `values` be wrapped in. always_wrap: Always wrap the `values` in `wrap_class` even if the values are the same except for DistributeVariable. Returns: Wrapped `values`.
github-repos
def authenticate(self, username, password): if self.config.get('LDAP_BIND_DIRECT_CREDENTIALS'): result = self.authenticate_direct_credentials(username, password) elif not self.config.get('LDAP_ALWAYS_SEARCH_BIND') and \ self.config.get('LDAP_USER_RDN_ATTR') == \ ...
An abstracted authentication method. Decides whether to perform a direct bind or a search bind based upon the login attribute configured in the config. Args: username (str): Username of the user to bind password (str): User's password to bind with. Returns: AuthenticationResponse
juraj-google-style
def get_metrics_for_resource(access_token, subscription_id, resource_group, resource_provider, resource_type, resource_name): endpoint = ''.join([get_rm_endpoint(), '/subscriptions/', subscription_id, '/resourceGroups/', resource_group, '/providers/', resource_provider, '/', resource_type, '/', resource_name, '/pro...
Get the monitoring metrics for a resource. Args: access_token (str): A valid Azure authentication token. subscription_id (str): Azure subscription id. resource_group (str): Azure resource group name. resource_type (str): Type of resource. resource_name (str): Name of resource. Returns: HTTP response. JSON body of res...
codesearchnet
def get_posts(self, num=None, tag=None, private=False): posts = self.posts if not private: posts = [post for post in posts if post.public] if tag: posts = [post for post in posts if tag in post.tags] if num: return posts[:num] return posts
Get all the posts added to the blog. Args: num (int): Optional. If provided, only return N posts (sorted by date, most recent first). tag (Tag): Optional. If provided, only return posts that have a specific tag. private (bool): By default (if False), private posts are not included. If set to True, private posts will a...
juraj-google-style
def load_steps(working_dir=None, steps_dir=None, step_file=None, step_list=None): if steps_dir is not None: step_files = glob.glob(os.path.join(steps_dir, '*.cwl')) elif step_file is not None: step_files = [step_file] elif step_list is not None: step_files = [] ...
Return a dictionary containing Steps read from file. Args: steps_dir (str, optional): path to directory containing CWL files. step_file (str, optional): path or http(s) url to a single CWL file. step_list (list, optional): a list of directories, urls or local file paths to CWL files or directories containing CWL files...
juraj-google-style
def moveRel(xOffset=None, yOffset=None, duration=0.0, tween=linear, pause=None, _pause=True): _failSafeCheck() (xOffset, yOffset) = _unpackXY(xOffset, yOffset) _mouseMoveDrag('move', None, None, xOffset, yOffset, duration, tween) _autoPause(pause, _pause)
Moves the mouse cursor to a point on the screen, relative to its current position. The x and y parameters detail where the mouse event happens. If None, the current mouse position is used. If a float value, it is rounded down. If outside the boundaries of the screen, the event happens at edge of the screen. Args: x (...
codesearchnet
def Kdp(scatterer): if (scatterer.thet0 != scatterer.thet) or \ (scatterer.phi0 != scatterer.phi): raise ValueError("A forward scattering geometry is needed to " + \ "compute the specific differential phase.") S = scatterer.get_S() return 1e-3 * (180.0/np.pi) * sca...
Specific differential phase (K_dp) for the current setup. Args: scatterer: a Scatterer instance. Returns: K_dp [deg/km]. NOTE: This only returns the correct value if the particle diameter and wavelength are given in [mm]. The scatterer object should be set to forward scattering geometry before calling this function.
juraj-google-style
def _ircounts2radiance(counts, scale, offset): rad = ((counts - offset) / scale) return rad.clip(min=0)
Convert IR counts to radiance Reference: [IR]. Args: counts: Raw detector counts scale: Scale [mW-1 m2 cm sr] offset: Offset [1] Returns: Radiance [mW m-2 cm-1 sr-1]
codesearchnet
def random_hermitian_matrix(num_qubits): dim = 2 ** num_qubits val_range = 2 random_real = tf.cast(tf.random.uniform([dim, dim], -val_range, val_range), tf.complex128) random_imag = 1j * tf.cast(tf.random.uniform([dim, dim], -val_range, val_range), tf.complex128) random_matrix = random_real + random...
Returns a random Hermitian matrix. Uses the property that A + A* is Hermitian for any matrix A. Args: num_qubits: Number of qubits on which the matrix acts.
github-repos
def select_char_code_table(self, table): tables = {'standard': 0, 'eastern european': 1, 'western european': 2, 'spare': 3 } if table in tables: self.send(chr(27)+'t'+chr(tables[table])) else: ...
Select character code table, from tree built in ones. Args: table: The desired character code table. Choose from 'standard', 'eastern european', 'western european', and 'spare' Returns: None Raises: RuntimeError: Invalid chartable.
juraj-google-style
def mols_to_file(mols, path): with open(path, 'w') as f: f.write(mols_to_text(mols))
Save molecules to the SDFile format file Args: mols: list of molecule objects path: file path to save
codesearchnet
def create(labels=None, **kw): if labels is not None: kw[u'labels'] = encoding.PyValueToMessage(MetricValue.LabelsValue, labels) return MetricValue(**kw)
Constructs a new metric value. This acts as an alternate to MetricValue constructor which simplifies specification of labels. Rather than having to create a MetricValue.Labels instance, all that's necessary to specify the required string. Args: labels (dict([string, [string]]): **kw: any other valid keyword args val...
juraj-google-style
def __init__(self, batch_env, step, is_training, should_log, config): self._batch_env = batch_env self._step = step self._is_training = is_training self._should_log = should_log self._config = config self._observ_filter = parts.StreamingNormalize( self._batch_env.observ[0], center=T...
Create an instance of the PPO algorithm. Args: batch_env: In-graph batch environment. step: Integer tensor holding the current training step. is_training: Boolean tensor for whether the algorithm should train. should_log: Boolean tensor for whether summaries should be returned. config: Object containing the agent conf...
juraj-google-style
def __init__(self, filename, content_generator=None, content_length=None): precondition.AssertType(filename, Text) self.filename = filename self.content_length = content_length if content_generator is None: raise ValueError("content_generator can't be None") self.content_generator = cont...
ApiBinaryStream constructor. Args: filename: A file name to be used by the browser when user downloads the file. content_generator: A generator that yields byte chunks (of any size) to be streamed to the user. content_length: The length of the stream, if known upfront. Raises: ValueError: if content_generator is None...
juraj-google-style
def _create_w_objective(m, X, R): genes, clusters = m.shape cells = X.shape[1] R1 = R.reshape((genes, 1)).dot(np.ones((1, cells))) def objective(w): w = w.reshape((m.shape[1], X.shape[1])) d = m.dot(w)+eps return np.sum((X + R1)*np.log(d + R1) - X*np.log(d)...
Creates an objective function and its derivative for W, given M and X (data) Args: m (array): genes x clusters X (array): genes x cells R (array): 1 x genes
juraj-google-style
def all_distances(coords1, coords2): c1 = np.array(coords1) c2 = np.array(coords2) z = (c1[:, None, :] - c2[None, :, :]) ** 2 return np.sum(z, axis=-1) ** 0.5
Returns the distances between two lists of coordinates Args: coords1: First set of cartesian coordinates. coords2: Second set of cartesian coordinates. Returns: 2d array of cartesian distances. E.g the distance between coords1[i] and coords2[j] is distances[i,j]
juraj-google-style
def write_index(self, overwrite: bool=False, mock: bool=False) -> None: write_if_allowed(self.index_filename, self.index_content(), overwrite=overwrite, mock=mock)
Writes the index file, if permitted. Args: overwrite: allow existing files to be overwritten? mock: pretend to write, but don't
codesearchnet
def tournament_number2name(self, number): tournaments = self.get_tournaments() d = {t['tournament']: t['name'] for t in tournaments} return d.get(number, None)
Translate tournament number to tournament name. Args: number (int): tournament number to translate Returns: name (str): name of the tournament or `None` if unknown. Examples: >>> NumerAPI().tournament_number2name(4) 'delta' >>> NumerAPI().tournament_number2name(99) None
juraj-google-style
def build_ellipse(X, Y): x_mean = np.mean(X) y_mean = np.mean(Y) cov_matrix = np.cov(np.vstack((X, Y))) (U, s, V) = linalg.svd(cov_matrix, full_matrices=False) chi_95 = np.sqrt(4.61) width = ((np.sqrt(cov_matrix[0][0]) * chi_95) * 2) height = ((np.sqrt(cov_matrix[1][1]) * chi_95) * 2) ei...
Construct ellipse coordinates from two arrays of numbers. Args: X (1D array_like) Y (1D array_like) Returns: float: The mean of `X`. float: The mean of `Y`. float: The width of the ellipse. float: The height of the ellipse. float: The angle of orientation of the ellipse.
codesearchnet
def record(*fields): @six.add_metaclass(_RecordMetaClass) class RecordType(object): _record_sentinel = True _record_fields = fields return RecordType
Constructs a type that can be extended to create immutable, value types. Examples: A typical declaration looks like:: class MyRecord(record('a', ('b', 1))): pass The above would make a sub-class of ``collections.namedtuple`` that was named ``MyRecord`` with a constructor that had the ``b`` field set to 1 by default....
codesearchnet
def remove_site(name): current_sites = list_sites() if name not in current_sites: log.debug('Site already absent: %s', name) return True ps_cmd = ['Remove-WebSite', '-Name', r"'{0}'".format(name)] cmd_ret = _srvmgr(ps_cmd) if cmd_ret['retcode'] != 0: msg = 'Unable to...
Delete a website from IIS. Args: name (str): The IIS site name. Returns: bool: True if successful, otherwise False .. note:: This will not remove the application pool used by the site. CLI Example: .. code-block:: bash salt '*' win_iis.remove_site name='My Test Site'
juraj-google-style
def get_likelihood(self, uni_matrix): uni_dim = uni_matrix.shape[1] num_edge = len(self.edges) values = np.zeros([1, num_edge]) new_uni_matrix = np.empty([uni_dim, uni_dim]) for i in range(num_edge): edge = self.edges[i] value, left_u, right_u = ...
Compute likelihood of the tree given an U matrix. Args: uni_matrix(numpy.array): univariate matrix to evaluate likelihood on. Returns: tuple[float, numpy.array]: likelihood of the current tree, next level conditional univariate matrix
juraj-google-style
def updateParams(self, newvalues): for (param, value) in newvalues.items(): if param not in self.model.freeparams: raise RuntimeError("Can't handle param: {0}".format( param)) if newvalues: self.model.updateParams(newvalues) ...
Update model parameters and re-compute likelihoods. This method is the **only** acceptable way to update model parameters. The likelihood is re-computed as needed by this method. Args: `newvalues` (dict) A dictionary keyed by param name and with value as new value to set. Each parameter name must either be a valid mo...
juraj-google-style
class ByteRewriter: LEAF = '[LEAF]' def __init__(self, rewriting_rules: Union[str, Dict[str, str]]): if isinstance(rewriting_rules, str): with open(rewriting_rules, 'r') as f: rewriting_rules = json.load(f) elif not isinstance(rewriting_rules, dict): rais...
Byte rewriter class for MyT5 tokenizer. This class is used to rewrite bytes using a hash tree. The hash tree is constructed from a set of rewriting rules. Args: rewriting_rules (`str` or `Dict[str, str]`): A path to a json file containing the rewriting rules or a dictionary containing the rewriting rules.
github-repos
def load_compositors(self, sensor_names): comps = {} mods = {} for sensor_name in sensor_names: if (sensor_name not in self.compositors): self.load_sensor_composites(sensor_name) if (sensor_name in self.compositors): comps[sensor_name] = DatasetDict(self.compositors[s...
Load all compositor configs for the provided sensors. Args: sensor_names (list of strings): Sensor names that have matching ``sensor_name.yaml`` config files. Returns: (comps, mods): Where `comps` is a dictionary: sensor_name -> composite ID -> compositor object And `mods` is a dictionary: sensor_name -> modifier ...
codesearchnet
def DeleteSignedBinary(binary_urn, token = None): if _ShouldUseLegacyDatastore(): try: aff4.FACTORY.Open( binary_urn, aff4_type=aff4.AFF4Stream, mode="r", token=token) except aff4.InstantiationError: raise SignedBinaryNotFoundError(binary_urn) aff4.FACTORY.D...
Deletes the binary with the given urn from the datastore. Args: binary_urn: RDFURN that serves as a unique identifier for the binary. token: ACL token to use with the legacy (non-relational) datastore. Raises: SignedBinaryNotFoundError: If the signed binary does not exist.
juraj-google-style
def appliance_device_snmp_v3_trap_destinations(self): if (not self.__appliance_device_snmp_v3_trap_destinations): self.__appliance_device_snmp_v3_trap_destinations = ApplianceDeviceSNMPv3TrapDestinations(self.__connection) return self.__appliance_device_snmp_v3_trap_destinations
Gets the ApplianceDeviceSNMPv3TrapDestinations API client. Returns: ApplianceDeviceSNMPv3TrapDestinations:
codesearchnet
def mark_flags_as_mutual_exclusive(flag_names, required=False, flag_values=_flagvalues.FLAGS): for flag_name in flag_names: if (flag_values[flag_name].default is not None): warnings.warn('Flag --{} has a non-None default value. That does not make sense with mark_flags_as_mutual_exclusive, which ...
Ensures that only one flag among flag_names is not None. Important note: This validator checks if flag values are None, and it does not distinguish between default and explicit values. Therefore, this validator does not make sense when applied to flags with default values other than None, including other false values ...
codesearchnet
def __init__(self, client=None, workingdir='/workingdir'): self.client = self.connect_to_docker(client) self.default_wdir = workingdir self.hostname = self.client.base_url
Initialization: Args: client (docker.Client): a docker-py client. If not passed, we will try to create the client from the job's environmental varaibles workingdir (str): default working directory to create in the containers
juraj-google-style