| # Upload layout notes | |
| This upload view is built from `dataset/bio_AlphaFold3_dataset` for ModelScope upload. | |
| The full local source contains `public_databases/mmcif_files/` with about 195k files, which exceeds the ModelScope upload pre-check file-count limit. The upload view therefore does not include that expanded directory. It includes the upstream archive instead: | |
| ```text | |
| data/public_databases/pdb_2022_09_28_mmcif_files.tar | |
| ``` | |
| Before running AlphaFold3 template search that requires `public_databases/mmcif_files`, extract the archive inside the dataset package: | |
| ```bash | |
| cd data/public_databases | |
| tar -xf pdb_2022_09_28_mmcif_files.tar | |
| ``` | |
| Other database directories are kept as linked source directories in the upload view. | |