Add 31 PRBench task specifications (instructions, task.yaml, paper markdown; ground truth withheld)
a48f2b1 verified | # Reproduction Instructions for AI Agent | |
| This document provides complete instructions for an AI agent to reproduce all figures from the referenced physics paper. | |
| **Note**: The paper contains figures as images. These image files are available at `/workspace/_paper_images/` (JPEG files like `_page_*.jpeg`). You can read them using the Read tool if you need to inspect figures from the paper for reference. | |
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| ## 1. Article Information | |
| | Field | quamtum computing | | |
| | ------------------- | ------------------------------------------------------------ | | |
| | **Title** | High-fidelity entangling gates in a three-dimensional ion crystal under micromotion | | |
| | **Author** | Y.-K. Wu , * Z.-D. Liu,* W.-D. Zhao, and L.-M. Duan | | |
| | **DOI** | 10.1103/PhysRevA.103.022419 | | |
| | **arXiv** | Not available (predates arXiv) | | |
| | **Source Markdown** | `GateOf2D.md` | | |
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| ## 2. Main Formulas Used in Reproduction | |
| All the formulas should be extracted from the article | |
| ## 3. Main Methodology | |
| All the methods used should be mentioned in the article | |
| --- | |
| ## 4. Input Parameters | |
| | Parameter | Symbol | Typical Values | Description | | |
| | -------------------------------------- | ------------- | ----------------- | ---------------------- | | |
| | number of ions | $N$ | 127 | | | |
| | mass of ion | $m$ | 2.874e-15 | mass of ion,usually Yb | | |
| | ratio of transverse to longitude field | $\alpha$ | 1 | | | |
| | Mathieu parameters | q | 0.3 | | | |
| | Mathieu parameters | a | 0.015 | | | |
| | rf frequency | $\omega_{rf}$ | $2\pi\times50$MHz | | | |
| | number of the first selected ion | $i_1$ | 4 | | | |
| | number of the second selected ion | $i_2$ | 6 | | | |
| Besides,you can use any constant in scipy.const. | |
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| ## 5. Banned Libraries | |
| The following libraries/approaches are **NOT allowed** for the core physics simulation: | |
| | Banned | Reason | | |
| | ----------------------------------------- | ---------------- | | |
| | use the result of the article before code | prevent cheating | | |
| | | | | |
| | | | | |
| | | | | |
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| ## 6. Data Files to Reproduce | |
| ### 6.1 Balance_place_of_ions.csv | |
| **File**: `data/Balance_place_of_ions.csv` | |
| **Columns**: `number of ions,x,y,z,x1,y1,z1` | |
| xyz are the zeroth-order terms of the ion's equilibrium position, and x1y1z1 are the first-order terms of the ion's equilibrium position.. Parameters are the same as in the article.In particular, the number of ions is set to 50 to reduce unnecessary computation time. | |
| The ion numbers are arranged based on the increasing order of x. | |
| --- | |
| ### 6.2 normal frequency | |
| **File**: `data/normal_frequancy.csv` | |
| **Columns**: `frequency,C1x,C1y,C1z,...,CNx,CNy,CNz,C1x1,C1y1,C1z1,...,CNx1,CNy1,CNz1,C1x-1,C1y-1,C1z-1,...,CNx-1,CNy-1,CNz-1` | |
| Cix, Ciy, Ciz are zeroth-order terms of the normal modes of the i-th ion corresponding to this frequency. | |
| Cix1, Ciy1, Ciz1 are first-order terms of the normal modes of the i-th ion corresponding to this frequency. | |
| Cix-1, Ciy-1, Ciz-1 are negative first-order terms of the normal modes of the i-th ion corresponding to this frequency. | |
| frequency are sorted in descending order. | |
| In particular, the number of ions is set to 50 to reduce unnecessary computation time. | |
| In this part, you do not need to plot a figure. | |
| --- | |
| ### 6.3 Raman Frequency of Typical couples of ions | |
| **File**: `data/Segments.csv` | |
| **Columns**: `Segment1` | |
| list your results of Segment shown in the article between the nearest ion pair. | |
| In particular, the number of ions is set to 50 to reduce unnecessary computation time. | |
| nseg =100 is not need | |
| In this part you need to plot 1 figure to show the results above like the article. | |
| --- | |
| If you can give me the right segments,you can draw other pictures easily.So you don’t need to draw them. | |
| All the figures is also placed in the \data | |
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| ## 7. Code Structure | |
| ### 7.1 Main Code | |
| **Path**: `reproduction/GateOfLinearTrap.py` | |
| Contains: | |
| * Basic information and parameters | |
| - `balance_place` function: input with N,A,Q,output the balance place of ions | |
| - `normal_mode` function: input with balance place of ions and A,Q, output the normal frequency and normal modes. | |
| - `Segment`function: input normal frequency, normal modes,couple of ions and other parameters shown in the article. Output the Segment of the parameter. | |
| - And other functions if you need. | |
| ### 7.2 execution code | |
| | Part | Script Path | | |
| | ---- | --------------------------------------- | | |
| | 1 | `reproduction/Balance_place_of_ions.py` | | |
| | 2 | `reproduction/normal_frequancy.py` | | |
| | 3 | `reproduction/infidelity_of_mu.py` | | |
| | 4 | `reproduction/Raman_Segments.py` | | |
| ### 7.3 Output Directories | |
| - Data files: `data/` | |
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| ## 8. Reproduction Requirements | |
| ### 8.1 Computational Resources | |
| D:\python310\python.exe | |