Datasets:

RyanIRL
/

ca1-cross-day-decoding

license: cc-by-4.0
pretty_name: ca1-crossday-decoding task data
tags:
  - neuroscience
  - calcium-imaging
  - two-photon
  - hippocampus
  - place-cells
  - representational-drift
  - terminal-bench-science

ca1-crossday-decoding

Data for the terminal-bench-science task ca1-crossday-decoding: decode a mouse's position online on a new recording day from raw two-photon calcium imaging of hippocampal CA1, given a full labeled session from days earlier and the first minutes of the new day.

Source

Zong, W., Obenhaus, H. A., Skytoen, E. R., et al. (2022). Large-scale two-photon calcium imaging in freely moving mice. Cell 185(6), 1240-1256. Deposited in the NIRD Research Data Archive, DOI 10.11582/2022.00008, licence CC BY 4.0. Mouse 97289, imaged in CA1 with the MINI2P miniature two-photon microscope while foraging in a square open field, from the deposit's ca1-97289 tarball: sessions 2021-03-16 (day A) and 2021-03-22 (day B), each 26,100 raw ScanImage pages (int16, 256 x 256, the focus alternating between two planes on every page, 14.5 frames per second) with their DeepLabCut tracking.

What was done

20210316_to_20210322/ holds one day pair.

Frames are written as acquired, interleaved and unregistered, to plain TIFFs without the ScanImage headers.
Positions are the midpoint of the two ears in arena centimetres: origin at the bottom-left corner of the box, computed per session from the four tracked box corners, so both days share one frame although the camera moved. Frames with low tracker confidence or impossible geometry are marked reliable = 0 and interpolated, positions are lightly smoothed, and scored marks reliable frames moving faster than 2 cm/s.
agent/ is what the agent trains on: all of day A, and day B's first 5 minutes (day_b_calibration/). judge/ is the rest of day B (day_b_stream/), which the verifier streams to the submitted decoder and grades on, and split.json, where its stretch before minute 15 of day B ends.