msc-kd-data / lib /msc_data.py
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"""
msc_data.py -- CIFAR-100, canonical ordering, and the Parquet schema.
Owns the single most dangerous invariant in the project: **row alignment**.
A per-sample table whose rows do not correspond to the same images across runs
destroys real correlations or manufactures fake ones, and nothing downstream
looks broken. Everything here exists to make that impossible rather than
unlikely.
Three independent defences:
1. The ordering is defined by the ORIGINAL pickle, not by a directory walk.
2. A dataset fingerprint is asserted equal across every run.
3. `sample_idx` is written explicitly and asserted canonical at write time.
Contents
1. sources Kaggle mirrors, layout resolution, download fallbacks
2. loading raw pickle -> arrays, in canonical order
3. fingerprint
4. schema the Parquet contract
5. datasets CPU reference pipeline and GPU fast pipeline
"""
from __future__ import annotations
import pickle
from pathlib import Path
from typing import Dict, List, Optional, Sequence, Tuple
import numpy as np
import msc_util as U
__version__ = "2.0.0"
CIFAR100_MEAN = (0.5071, 0.4865, 0.4409)
CIFAR100_STD = (0.2673, 0.2564, 0.2762)
N_CLASSES = 100
N_TRAIN = 50000
N_TEST = 10000
# ---------------------------------------------------------------------------
# 1. sources
# ---------------------------------------------------------------------------
KAGGLE_DATASETS = {
"cifar100": "shanmuk4622/dataset-cifar100-python",
"cifar10": "shanmuk4622/dataset-cifar10-python",
}
_PICKLE_DIR = {"cifar100": "cifar-100-python", "cifar10": "cifar-10-batches-py"}
_SPLIT_FILES = {"cifar100": ("train", "test"),
"cifar10": ("data_batch_1", "test_batch")}
def _is_pickle_root(p: Path, which: str) -> bool:
return p.is_dir() and all((p / f).exists() for f in _SPLIT_FILES[which])
def find_pickle_root(base: Path, which: str = "cifar100",
max_depth: int = 3) -> Optional[Path]:
"""Locate the directory holding the split files, whatever the nesting.
Kaggle preserves whatever the uploader zipped, so all of these occur and
all must work (failure D2):
<base>/cifar-100-python/train
<base>/train
<base>/anything/cifar-100-python/train
"""
if not base.exists():
return None
if _is_pickle_root(base, which):
return base
direct = base / _PICKLE_DIR[which]
if _is_pickle_root(direct, which):
return direct
try:
for p in sorted(base.rglob("*")):
if (p.is_dir()
and len(p.relative_to(base).parts) <= max_depth
and _is_pickle_root(p, which)):
return p
except Exception:
pass
return None
def _extract_tarball(base: Path, which: str, scratch: Path) -> Optional[Path]:
"""Some uploads keep the .tar.gz. Extract to scratch, never to
/kaggle/working -- that is 20 GB and it is the artifact space."""
import tarfile
if not base.exists():
return None
for tb in sorted(list(base.glob("*.tar.gz")) + list(base.glob("*.tgz"))):
dest = U.ensure_dir(scratch / "data")
print(f"[DATA] extracting {tb.name} -> {dest}")
try:
with tarfile.open(tb) as t:
t.extractall(dest)
except Exception as e:
print(f"[DATA] extract failed: {e}")
continue
r = find_pickle_root(dest, which)
if r is not None:
return r
return None
def locate_cifar(which: str = "cifar100",
scratch_dir: str = "/kaggle/temp") -> str:
"""Return the directory that DIRECTLY contains the CIFAR pickle splits.
Resolution order, fastest first (failure D1):
1. attached Kaggle dataset -- no download at all
2. kagglehub download -- mirrors are public, no credentials
3. tarball in an attached input -- extracted to scratch
4. torchvision from origin -- last resort
We use the ORIGINAL pickle, never a train/<class>/*.png mirror. With a PNG
layout the enumeration order depends on filenames and class-directory sort
order, so two runs on different mirrors get different sample_idx -> image
maps: row alignment broken at the source, with nothing downstream looking
wrong. The fingerprint (failure D3) is the backstop for the case where the
source changes underneath us.
"""
assert which in KAGGLE_DATASETS, f"unknown dataset {which!r}"
scratch = Path(scratch_dir)
slug = KAGGLE_DATASETS[which]
short = slug.split("/")[-1]
inp = Path("/kaggle/input")
for base in (inp / short, inp / short.replace("dataset-", ""),
inp / _PICKLE_DIR[which]):
r = find_pickle_root(base, which)
if r is not None:
print(f"[DATA] attached Kaggle dataset: {r}")
return str(r)
if inp.exists():
for base in sorted(inp.iterdir()):
r = find_pickle_root(base, which)
if r is not None:
print(f"[DATA] attached Kaggle dataset: {r}")
return str(r)
try:
import kagglehub
print(f"[DATA] kagglehub download: {slug}")
p = Path(kagglehub.dataset_download(slug))
r = find_pickle_root(p, which) or _extract_tarball(p, which, scratch)
if r is not None:
print(f"[DATA] kagglehub -> {r}")
return str(r)
print(f"[DATA] kagglehub gave {p} but no pickle splits inside")
except Exception as e:
print(f"[DATA] kagglehub unavailable ({type(e).__name__}: {e})")
if inp.exists():
for base in sorted(inp.iterdir()):
r = _extract_tarball(base, which, scratch)
if r is not None:
return str(r)
r = find_pickle_root(scratch / "data", which)
if r is not None:
print(f"[DATA] cached in scratch: {r}")
return str(r)
root = U.ensure_dir(scratch / "data")
print(f"[DATA] falling back to torchvision download of {which} "
f"(slow; prefer attaching {slug})")
from torchvision import datasets
ds = datasets.CIFAR100 if which == "cifar100" else datasets.CIFAR10
ds(root=str(root), train=True, download=True)
ds(root=str(root), train=False, download=True)
r = find_pickle_root(root, which)
assert r is not None, f"{which} download did not produce the pickle splits"
return str(r)
# ---------------------------------------------------------------------------
# 2. loading -- canonical order
# ---------------------------------------------------------------------------
def load_raw(root: str, train: bool) -> Tuple[np.ndarray, np.ndarray]:
"""Load straight from the pickle, so the ordering is canonically defined.
`root` directly contains `train` and `test`; `locate_cifar` has already
resolved whatever nesting the upload used. One stray extra level is
tolerated because it costs nothing and removes a whole class of support
questions.
"""
name = "train" if train else "test"
f = Path(root) / name
if not f.exists():
alt = Path(root) / _PICKLE_DIR["cifar100"] / name
if alt.exists():
f = alt
with open(f, "rb") as fh:
d = pickle.load(fh, encoding="bytes")
data = d[b"data"].reshape(-1, 3, 32, 32).transpose(0, 2, 3, 1) # NHWC uint8
labels = np.array(d[b"fine_labels"], dtype=np.int64)
return np.ascontiguousarray(data), labels
# ---------------------------------------------------------------------------
# 3. fingerprint
# ---------------------------------------------------------------------------
def dataset_fingerprint(root: str) -> Dict[str, str]:
"""sha256 over labels and leading pixels, both splits.
Asserted equal across all four runs. Catches a swapped mirror, a
re-uploaded dataset, and a torchvision version change -- any of which
would silently repermute sample_idx. Failures D3, D4.
"""
fp: Dict[str, str] = {}
for split, train in (("train", True), ("test", False)):
data, labels = load_raw(root, train)
fp[f"{split}_n"] = str(len(labels))
fp[f"{split}_labels_sha256"] = U.sha256_bytes(
labels.astype(np.int16).tobytes())
fp[f"{split}_pixels_sha256"] = U.sha256_bytes(data[:100].tobytes())
return fp
def assert_fingerprint(actual: Dict[str, str], expected: Dict[str, str],
context: str = "") -> None:
if actual == expected:
return
diff = {k: (expected.get(k), actual.get(k))
for k in set(expected) | set(actual)
if expected.get(k) != actual.get(k)}
raise AssertionError(
f"DATASET FINGERPRINT MISMATCH {context}\n"
f" differing fields (expected, actual): {diff}\n"
f"This run saw different data than the bootstrap. Row alignment across "
f"runs would be void and every correlation silently wrong. Halting.")
def frozen_train_slice(n_total: int = N_TRAIN, n_slice: int = 5000,
master_seed: int = 0) -> List[int]:
"""A fixed slice of the TRAINING set that IS trained on.
Identical across all four runs (failure D6). Trained on, not held out:
EL2N, forgetting events and prediction depth are only defined on training
examples, and holding 5,000 out would cost ~0.5-1 point of test accuracy
and risk tripping the accuracy gate for a reason unrelated to the recipe.
"""
rng = np.random.default_rng(U.derive_seed(master_seed, "train_seen_slice"))
return sorted(rng.choice(n_total, size=min(n_slice, n_total),
replace=False).tolist())
# ---------------------------------------------------------------------------
# 4. schema -- the Parquet contract
# ---------------------------------------------------------------------------
RESOLUTIONS = (16, 20, 24, 28, 32)
K_DEPTH = 5
BATTERY = ("msp", "margin", "entropy", "ce_loss", "el2n", "forget_events",
"pred_depth")
def schema_columns(resolutions: Sequence[int] = RESOLUTIONS,
k_depth: int = K_DEPTH,
include_upsample: bool = True,
include_probe_k: bool = True) -> List[str]:
"""The exact column list, in order. Owned here so the analysis driver and
the emitter cannot disagree about it."""
cols = ["sample_idx", "label"]
for i in range(1, k_depth + 1):
cols += [f"pred_d{i}", f"top1p_d{i}", f"top2p_d{i}"]
for r in resolutions:
cols += [f"pred_r{r}", f"top1p_r{r}", f"top2p_r{r}"]
if include_upsample:
for r in resolutions:
cols += [f"pred_ru{r}", f"top1p_ru{r}", f"top2p_ru{r}"]
cols += list(BATTERY)
if include_probe_k:
cols += ["pred_probeK", "top1p_probeK", "top2p_probeK"]
return cols
def axis_columns(axis: str, resolutions: Sequence[int] = RESOLUTIONS,
k_depth: int = K_DEPTH) -> List[str]:
"""Column suffixes for one axis, ascending in cost."""
if axis == "depth":
return [f"d{i}" for i in range(1, k_depth + 1)]
if axis == "resolution":
return [f"r{r}" for r in resolutions]
if axis == "resolution_upsample":
return [f"ru{r}" for r in resolutions]
raise ValueError(f"unknown axis {axis!r}")
def assert_canonical_index(sample_idx: np.ndarray, n_expected: Optional[int] = None) -> None:
"""Row alignment, enforced at write time. Failures D7, D8, I1."""
sample_idx = np.asarray(sample_idx)
n = len(sample_idx)
if n_expected is not None and n != n_expected:
raise AssertionError(
f"expected {n_expected} rows, got {n}. A loader with "
f"drop_last=True or a Subset would do this.")
if not np.array_equal(sample_idx, np.arange(n)):
bad = int(np.argmax(sample_idx != np.arange(n)))
raise AssertionError(
f"sample_idx is not the canonical 0..{n-1} ordering "
f"(first mismatch at position {bad}: got {sample_idx[bad]}). "
f"Evaluation loaders must be shuffle=False, drop_last=False, "
f"sampler=None, with no Subset.")
# ---------------------------------------------------------------------------
# 5. datasets
# ---------------------------------------------------------------------------
class CifarCPU:
"""Reference pipeline: per-sample augmentation, torchvision semantics.
Kept as the definition of correct. The GPU pipeline below is verified
pixel-identical against these exact operations (AT-17).
"""
def __init__(self, root: str, train: bool, augment: bool,
indices: Optional[Sequence[int]] = None):
import torch
data, labels = load_raw(root, train)
idx = np.arange(len(labels)) if indices is None else np.asarray(indices)
self.idx = idx
self.data = torch.from_numpy(data[idx]).permute(0, 3, 1, 2).contiguous()
self.labels = torch.from_numpy(labels[idx])
self.augment = augment
self.mean = torch.tensor(CIFAR100_MEAN).view(3, 1, 1)
self.std = torch.tensor(CIFAR100_STD).view(3, 1, 1)
def __len__(self) -> int:
return len(self.labels)
def __getitem__(self, i: int):
import torch
import torch.nn.functional as F
img = self.data[i]
if self.augment:
# torchvision RandomCrop(32, padding=4): zero-pad the uint8 image,
# THEN crop. Zero in pixel space is not zero after Normalize, so
# padding a normalised tensor would train on different data.
img = F.pad(img.unsqueeze(0), (4, 4, 4, 4), value=0).squeeze(0)
top = int(torch.randint(0, 9, (1,)).item())
left = int(torch.randint(0, 9, (1,)).item())
img = img[:, top:top + 32, left:left + 32]
if torch.rand(1).item() < 0.5:
img = torch.flip(img, dims=[2])
x = img.float().div(255.0).sub(self.mean).div(self.std)
return x, self.labels[i], int(self.idx[i])
class CifarGPU:
"""The whole dataset resident on the GPU as uint8, augmented in batch.
CIFAR ResNets at batch 64 are LATENCY bound, not compute bound: ~1.09 GMACs
is single-digit ms on a T4, but a Python DataLoader doing per-sample
pad/crop/flip/normalise on two Kaggle vCPUs cannot keep up and the GPU
waits. Moving 150 MB of uint8 pixels onto the card removes the dataloader
from the critical path entirely. Failure M7.
This is a SPEED change and not a RECIPE change, and AT-17 proves it: given
the same (top, left, flip) the batched path is pixel-identical to the
torchvision ops in CifarCPU.
Augmentation draws from the torch CUDA RNG, so it is captured by the
checkpoint's RNG state and a resumed run replays the same augmentations.
"""
def __init__(self, root: str, train: bool, device,
indices: Optional[Sequence[int]] = None):
import torch
data, labels = load_raw(root, train)
idx = np.arange(len(labels)) if indices is None else np.asarray(indices)
self.device = device
self.n = len(idx)
self.sample_idx = torch.from_numpy(idx.astype(np.int64)).to(device)
self.x = torch.from_numpy(data[idx]).permute(0, 3, 1, 2).contiguous().to(device)
self.y = torch.from_numpy(labels[idx]).to(device)
self.mean = torch.tensor(CIFAR100_MEAN, device=device).view(1, 3, 1, 1) * 255.0
self.std = torch.tensor(CIFAR100_STD, device=device).view(1, 3, 1, 1) * 255.0
def __len__(self) -> int:
return self.n
def nbytes(self) -> int:
return int(self.x.numel())
def _normalise(self, xb):
return (xb.float() - self.mean) / self.std
def augment(self, xb_u8, gen=None):
"""Batched RandomCrop(32, pad=4) + RandomHorizontalFlip."""
import torch
import torch.nn.functional as F
b = xb_u8.shape[0]
xp = F.pad(xb_u8, (4, 4, 4, 4), mode="constant", value=0) # uint8 space
top = torch.randint(0, 9, (b,), device=self.device, generator=gen)
left = torch.randint(0, 9, (b,), device=self.device, generator=gen)
ar = torch.arange(32, device=self.device)
rows = (top.view(b, 1) + ar.view(1, 32)).view(b, 1, 32, 1).expand(b, 3, 32, 40)
xp = xp.gather(2, rows)
cols = (left.view(b, 1) + ar.view(1, 32)).view(b, 1, 1, 32).expand(b, 3, 32, 32)
xp = xp.gather(3, cols)
flip = torch.rand(b, device=self.device, generator=gen) < 0.5
xp = torch.where(flip.view(b, 1, 1, 1), xp.flip(3), xp)
return self._normalise(xp)
def train_batches(self, batch_size: int, gen=None):
import torch
perm = torch.randperm(self.n, device=self.device, generator=gen)
for i in range(0, self.n, batch_size):
sl = perm[i:i + batch_size]
yield self.augment(self.x[sl], gen), self.y[sl], self.sample_idx[sl]
def eval_batches(self, batch_size: int = 512, resolution: int = 32,
mode: str = "native"):
"""Deterministic order, no augmentation. THIS is the canonical
sample_idx ordering every per-sample table refers to."""
import torch.nn.functional as F
for i in range(0, self.n, batch_size):
xb = self._normalise(self.x[i:i + batch_size])
if resolution != 32:
xb = F.interpolate(xb, size=(resolution, resolution),
mode="bilinear", align_corners=False)
if mode == "upsample":
xb = F.interpolate(xb, size=(32, 32), mode="bilinear",
align_corners=False)
yield xb, self.y[i:i + batch_size], self.sample_idx[i:i + batch_size]
def n_batches(self, batch_size: int) -> int:
return (self.n + batch_size - 1) // batch_size