File size: 8,856 Bytes
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# Copyright (c) Facebook, Inc. and its affiliates. All Rights Reserved.
import errno
import os
import os.path as op
import re
import logging
import numpy as np
import torch
import random
import shutil
from .dist import is_main_process
import yaml
from .logger import LOGGER as logger
from pprint import pformat
from .common import limited_retry_agent, exclusive_open_to_read
def humanbytes(B):
'Return the given bytes as a human friendly KB, MB, GB, or TB string'
B = float(B)
KB = float(1024)
MB = float(KB ** 2) # 1,048,576
GB = float(KB ** 3) # 1,073,741,824
TB = float(KB ** 4) # 1,099,511,627,776
if B < KB:
return '{0} {1}'.format(B, 'Bytes' if 0 == B > 1 else 'Byte')
elif KB <= B < MB:
return '{0:.2f} KB'.format(B/KB)
elif MB <= B < GB:
return '{0:.2f} MB'.format(B/MB)
elif GB <= B < TB:
return '{0:.2f} GB'.format(B/GB)
elif TB <= B:
return '{0:.2f} TB'.format(B/TB)
def ensure_directory(path):
if path == '' or path == '.':
return
if path != None and len(path) > 0:
assert not op.isfile(path), '{} is a file'.format(path)
if not os.path.exists(path) and not op.islink(path):
try:
os.makedirs(path)
except:
if os.path.isdir(path):
# another process has done makedir
pass
else:
raise
def get_user_name():
import getpass
return getpass.getuser()
def acquireLock(lock_f='/tmp/lockfile.LOCK'):
''' acquire exclusive lock file access '''
import fcntl
locked_file_descriptor = open(lock_f, 'w+')
fcntl.lockf(locked_file_descriptor, fcntl.LOCK_EX)
return locked_file_descriptor
def releaseLock(locked_file_descriptor):
''' release exclusive lock file access '''
locked_file_descriptor.close()
def hash_sha1(s):
import hashlib
if type(s) is not str:
s = pformat(s)
return hashlib.sha1(s.encode('utf-8')).hexdigest()
def print_trace():
import traceback
traceback.print_exc()
class NoOp(object):
""" useful for distributed training No-Ops """
def __getattr__(self, name):
return self.noop
def noop(self, *args, **kwargs):
return
def str_to_bool(value):
if value.lower() in {'false', 'f', '0', 'no', 'n'}:
return False
elif value.lower() in {'true', 't', '1', 'yes', 'y'}:
return True
raise ValueError(f'{value} is not a valid boolean value')
def mkdir(path):
# if it is the current folder, skip.
# otherwise the original code will raise FileNotFoundError
if path == '':
return
try:
os.makedirs(path)
except OSError as e:
if e.errno != errno.EEXIST:
raise
def save_config(cfg, path):
if is_main_process():
with open(path, 'w') as f:
f.write(cfg.dump())
def config_iteration(output_dir, max_iter):
save_file = os.path.join(output_dir, 'last_checkpoint')
iteration = -1
if os.path.exists(save_file):
with open(save_file, 'r') as f:
fname = f.read().strip()
model_name = os.path.basename(fname)
model_path = os.path.dirname(fname)
if model_name.startswith('model_') and len(model_name) == 17:
iteration = int(model_name[-11:-4])
elif model_name == "model_final":
iteration = max_iter
elif model_path.startswith('checkpoint-') and len(model_path) == 18:
iteration = int(model_path.split('-')[-1])
return iteration
def get_matching_parameters(model, regexp, none_on_empty=True):
"""Returns parameters matching regular expression"""
if not regexp:
if none_on_empty:
return {}
else:
return dict(model.named_parameters())
compiled_pattern = re.compile(regexp)
params = {}
for weight_name, weight in model.named_parameters():
if compiled_pattern.match(weight_name):
params[weight_name] = weight
return params
def freeze_weights(model, regexp):
"""Freeze weights based on regular expression."""
for weight_name, weight in get_matching_parameters(model, regexp).items():
weight.requires_grad = False
logger.info("Disabled training of {}".format(weight_name))
def unfreeze_weights(model, regexp, backbone_freeze_at=-1,
is_distributed=False):
"""
WARNING: This is not fully tested and may have issues. Now it is not used
during training but keep it here for future reference.
Unfreeze weights based on regular expression.
This is helpful during training to unfreeze freezed weights after
other unfreezed weights have been trained for some iterations.
"""
for weight_name, weight in get_matching_parameters(model, regexp).items():
weight.requires_grad = True
logger.info("Enabled training of {}".format(weight_name))
if backbone_freeze_at >= 0:
logger.info("Freeze backbone at stage: {}".format(backbone_freeze_at))
if is_distributed:
model.module.backbone.body._freeze_backbone(backbone_freeze_at)
else:
model.backbone.body._freeze_backbone(backbone_freeze_at)
def delete_tsv_files(tsvs):
for t in tsvs:
if op.isfile(t):
try_delete(t)
line = op.splitext(t)[0] + '.lineidx'
if op.isfile(line):
try_delete(line)
def concat_files(ins, out):
mkdir(op.dirname(out))
out_tmp = out + '.tmp'
with open(out_tmp, 'wb') as fp_out:
for i, f in enumerate(ins):
logging.info('concating {}/{} - {}'.format(i, len(ins), f))
with open(f, 'rb') as fp_in:
shutil.copyfileobj(fp_in, fp_out, 1024*1024*10)
os.rename(out_tmp, out)
def concat_tsv_files(tsvs, out_tsv):
concat_files(tsvs, out_tsv)
sizes = [os.stat(t).st_size for t in tsvs]
sizes = np.cumsum(sizes)
all_idx = []
for i, t in enumerate(tsvs):
for idx in load_list_file(op.splitext(t)[0] + '.lineidx'):
if i == 0:
all_idx.append(idx)
else:
all_idx.append(str(int(idx) + sizes[i - 1]))
with open(op.splitext(out_tsv)[0] + '.lineidx', 'w') as f:
f.write('\n'.join(all_idx))
def load_list_file(fname):
with open(fname, 'r') as fp:
lines = fp.readlines()
result = [line.strip() for line in lines]
if len(result) > 0 and result[-1] == '':
result = result[:-1]
return result
def try_once(func):
def func_wrapper(*args, **kwargs):
try:
return func(*args, **kwargs)
except Exception as e:
logging.info('ignore error \n{}'.format(str(e)))
return func_wrapper
@try_once
def try_delete(f):
os.remove(f)
def set_seed(seed, n_gpu):
random.seed(seed)
np.random.seed(seed)
torch.manual_seed(seed)
if n_gpu > 0:
torch.cuda.manual_seed_all(seed)
def print_and_run_cmd(cmd):
print(cmd)
os.system(cmd)
def write_to_yaml_file(context, file_name):
with open(file_name, 'w') as fp:
yaml.dump(context, fp, encoding='utf-8')
def load_from_yaml_file(yaml_file):
with open(yaml_file, 'r') as fp:
return yaml.load(fp, Loader=yaml.CLoader)
def parse_yaml_file(yaml_file):
r = re.compile('.*fea.*lab.*.yaml')
temp = op.basename(yaml_file).split('.')
split_name = temp[0]
if r.match(yaml_file) is not None:
fea_folder = '.'.join(temp[temp.index('fea') + 1 : temp.index('lab')])
lab_folder = '.'.join(temp[temp.index('lab') + 1 : -1])
else:
fea_folder, lab_folder = None, None
return split_name, fea_folder, lab_folder
def check_yaml_file(yaml_file):
# check yaml file, generate if possible
if not op.isfile(yaml_file):
try:
split_name, fea_folder, lab_folder = parse_yaml_file(yaml_file)
if fea_folder and lab_folder:
base_yaml_file = op.join(op.dirname(yaml_file), split_name + '.yaml')
if op.isfile(base_yaml_file):
data = load_from_yaml_file(base_yaml_file)
data['feature'] = op.join(fea_folder, split_name + '.feature.tsv')
data['label'] = op.join(lab_folder, split_name + '.label.tsv')
assert op.isfile(op.join(op.dirname(base_yaml_file), data['feature']))
assert op.isfile(op.join(op.dirname(base_yaml_file), data['label']))
if is_main_process():
write_to_yaml_file(data, yaml_file)
print("generate yaml file: {}".format(yaml_file))
except:
raise ValueError("yaml file: {} does not exist and cannot create it".format(yaml_file))
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