disco-replay / substrate /SOURCE.md
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DiSCo strands

The two files are redistributed unchanged from version 3 of The Diffusion-Simulated Connectivity Dataset (Rafael-Patino, Girard, Truffet, Pizzolato, Caruyer, Thiran), Mendeley Data, doi:10.17632/fgf86jdfg6.3, licensed CC BY 4.0. Paper: Data in Brief 38 (2021) 107429, doi:10.1016/j.dib.2021.107429.

file sha256 (prefix) content
DiSCo_Strands_Trajectories.tck 92176064b9170a2e 12,196 strand centrelines, MRtrix track file, coordinates in units of the 25 um ground-truth voxel
DiSCo_Strands_Diameters.txt ba266beb01a80660 one strand diameter per line, millimetres (1.4 to 4.2 um)

dmipy_sim.spec.disco_spec(tracks, diameters) reads them into the substrate spec the walk uses; every unit conversion is recorded in the spec's provenance.