grey-matter-spheres / README.md
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metadata
license:
  - cc-by-nc-sa-4.0
  - other
pretty_name: grey-matter-spheres

SubstrateCommons/grey-matter-spheres

Replay packs (.rpk) built with dmipy_sim: one converged Monte-Carlo walk each, stored so any acquisition can be replayed on it. Load one with ReplayPack.load("hf://SubstrateCommons/grey-matter-spheres/<path>"); the manifest (manifest.json) holds the sha256 every load is checked against. This file is rendered from the manifest by dmipy_sim.replay.publish.

Substrate

analytic/packedspheres

  • box: 62.4591 × 62.4591 × 62.4591 µm
  • boundary: periodic, periodic, periodic
pool D (m²/s) water fraction
extra 2e-09 1
intra 2e-09 0

Packs

id duration walkers bands channels floor size commit path
gm/packed-spheres-leaky 100 ms 20000 48 positions, boundary_local_time, compartment 0.0193 12.8 MB — packs/gm_spheres_100ms.rpk
gm/packed-spheres-leaky-250ms-c2-seg125ms 250 ms (2 × 125 ms, 15.6 MB/window) 20000 60 positions, boundary_local_time, compartment 0.0163 31.3 MB — packs/packed_spheres_leaky_250ms_c2_seg125ms.rpk

Citation

  • dmipy-sim grey-matter stand-in: RSA-packed spheres 2-9 um, vf 0.35, kappa 2e-5 m/s, D 2e-9, 100 ms
  • dmipy-sim grey-matter stand-in: RSA-packed spheres 2-9 um, vf 0.35, kappa 2e-5 m/s, D 2e-9, 250 ms

Licence

The packs are distributed under CC-BY-NC-SA-4.0 OR LicenseRef-Commercial (the full terms: https://huggingface.co/datasets/SubstrateCommons/grey-matter-spheres/blob/main/LICENSING.md). The source geometry of each pack keeps its own licence, recorded in the pack's license field: cc-by-4.0; the format never relicenses a source.