| --- |
| pretty_name: Noc_s |
| task_categories: |
| - tabular-regression |
| tags: |
| - tabular |
| - biomedical |
| - benchmark |
| - TabBioMed |
| - metabolomics |
| - regression |
| size_categories: |
| - n<1K |
| configs: |
| - config_name: default |
| data_files: |
| - split: fold_0_train |
| path: data/fold_0/train.parquet |
| - split: fold_0_validation |
| path: data/fold_0/val.parquet |
| - split: fold_0_test |
| path: data/fold_0/test.parquet |
| - split: fold_1_train |
| path: data/fold_1/train.parquet |
| - split: fold_1_validation |
| path: data/fold_1/val.parquet |
| - split: fold_1_test |
| path: data/fold_1/test.parquet |
| - split: fold_2_train |
| path: data/fold_2/train.parquet |
| - split: fold_2_validation |
| path: data/fold_2/val.parquet |
| - split: fold_2_test |
| path: data/fold_2/test.parquet |
| - split: fold_3_train |
| path: data/fold_3/train.parquet |
| - split: fold_3_validation |
| path: data/fold_3/val.parquet |
| - split: fold_3_test |
| path: data/fold_3/test.parquet |
| - split: fold_4_train |
| path: data/fold_4/train.parquet |
| - split: fold_4_validation |
| path: data/fold_4/val.parquet |
| - split: fold_4_test |
| path: data/fold_4/test.parquet |
| license: bsd-3-clause |
| --- |
| |
| # Noc_s |
| |
| Part of **TabBioMed** (*TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning*), a benchmark of 94 curated biomedical |
| tabular datasets. Code, preprocessing and documentation: https://github.com/AI-sandbox/TabBioMed. |
| |
| PTR-ToF-MS analysis of hazelnut paste (Corylus avellana L.) from different geographical origins, roasted at varying times and temperatures (72 samples, 380 peaks, 24 batches of technical replicates). Regression: predicted value is the roasting time. S/P=0.19. Experimental details in Mazzucotelli et al. Source PTR-ToF-MS peak values are area-normalized to a row sum of one and are retained without an additional logarithmic transformation. Feature scaling is fitted within each training partition. Five grouped outer folds test every sample exactly once. All samples sharing a source ID stay together in outer and inner CV and in the final-fit validation holdout; source IDs are split metadata, not features. |
| |
| | Domain | Task | Samples | Features | Classes | |
| |---|---|---|---|---| |
| | Metabolomics | regression | 72 | 380 | - | |
| |
| **Splits.** 5 stored outer cross-validation folds (`data/fold_<i>/`), each with train/val/test files (fold 0: 48/9/15 rows). Every row appears in exactly one outer test fold. HPO in the paper uses inner folds drawn from each outer non-test pool. |
|
|
| ## Files |
|
|
| - `data/**.parquet`: one row per sample. `row_idx` is the row index in the original |
| TabBioMed array; `f_<i>[_<name>]` are the features (in order); `target` (or `target_<j>` |
| for multi-target tasks) is the label. Categorical feature indices (0-based, among the |
| features): `[]`. Missing values are stored as nulls. |
| - `metadata.json`: TabBioMed task metadata (task type, categorical indices, source, description). |
| - `split_groups.json`: `groups[row_idx]` gives the sample group (e.g. patient, donor or strain) that must stay together in any re-split. Split metadata only, never a feature. |
|
|
| ```python |
| from datasets import load_dataset |
| ds = load_dataset("TabBioMed/Noc_s") |
| ``` |
|
|
| A Croissant (1.1) description with Responsible-AI fields is distributed with the |
| TabBioMed release. |
|
|
| ## Source and license |
|
|
| Dataset license: [BSD-3-Clause](https://opensource.org/license/bsd-3-clause). |
|
|
| - [CIFASIS TabPFN-VOCS distribution](https://github.com/CIFASIS/TabPFN-VOCS). CIFASIS (2025), On the use of TabPFN on mass spectrometry analysis of volatile organic compounds, DOI 10.1038/s41598-025-29128-6. Source license: [BSD-3-Clause](https://opensource.org/license/bsd-3-clause). Copyright (c) 2025 CIFASIS. The TabPFN-VOCS repository distributes the final data tables under BSD-3-Clause. Retain the copyright, conditions and disclaimer. |
|
|
| See `NOTICE.md` for attribution and modifications and `LICENSES/` for license texts. |
|
|
| ## Citation |
|
|
| ```bibtex |
| @inproceedings{tabbiomed2026, |
| title = {TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning}, |
| author = {Mateo Bernad{\'o}, Pau and Polapragada, Saivenkata Nagavyjayanthi and Bonet, David and Arbiol Rakuljic, Pol and Mogas Pladevall, Laia and Comajoan Cara, Mar{\c{c}}al and Gonzalez Ferrer, Jesus and Abante, Jordi and Mas Montserrat, Daniel and Haussler, David and Ioannidis, Alexander G.}, |
| booktitle = {Advances in Neural Information Processing Systems (NeurIPS), Evaluations and Datasets Track}, |
| year = {2026} |
| } |
| ``` |
|
|
