| # Processing Snapshot |
|
|
| This directory contains a source snapshot of the scripts used for the released |
| BubbleID-Flow data products. It accompanies, but does not replace, the |
| canonical software repository: |
|
|
| https://github.com/UARK-NED3/BubbleID-Flow |
|
|
| The repository baseline at the time of this release snapshot was commit |
| `051c07dd8016cc27861509ac203b59b45b29e170`. The files under `scripts/` are the |
| archived processing snapshot for this dataset release. Run them from this |
| directory with `python -m scripts.<module_name>` so intra-script imports resolve |
| from the snapshot. |
|
|
| ## Environment |
|
|
| `environment.yml` records the environment versions observed during release |
| preparation: Python 3.10.19, PyTorch 2.9.1 CPU, Detectron2 0.6, OpenCV 4.11.0, |
| NumPy 1.23.0, and pandas 2.3.3. The environment file is a dependency |
| specification, not a platform-independent binary lockfile. |
|
|
| ## Main entry points |
|
|
| - `labelme_to_coco.py`: convert LabelMe annotations to ROI-aware COCO format. |
| - `train_detectron2.py`: fine-tune the one-class Mask R-CNN model. |
| - `evaluate_detectron2.py`: calculate COCO and union-mask metrics. |
| - `analyze_segmentation_robustness.py`: reproduce score-threshold and |
| segmentation-robustness analyses. |
| - `audit_thermal_reduction.py`: calculate traceable thermal state summaries. |
| - `analyze_optical_thermal_association.py`: perform state-level |
| optical-thermal screening. |
| - `analyze_multimodal_case.py`: prepare per-case optical, thermal, and AE |
| summaries subject to the timing limits in `../timing_reconciliation.csv`. |
| - `create_bubbleid_flow_showcase_video.py`: regenerate the derived presentation |
| videos under `../Videos`. |
|
|
| ## Reproduction boundary |
|
|
| The release contains the 130 LabelMe files and checkpoint but does not include |
| a frozen file-level 104/26 train/holdout split manifest, original training |
| seed, augmentation record, or checkpoint-selection history. It therefore |
| supports reanalysis and new split construction, but does not independently |
| reconstruct the reported same-sequence evaluation exactly. |
|
|
